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Experimental Data Annotations Click to see Annotation Detail View
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Experimental Data Annotations Click to see Annotation Detail View
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# | Reference Title | Reference Citation |
1. | Genome-wide scan for interacting loci affecting human cholesteryl ester transfer protein-induced hypercholesterolemia in transgenic human cholesteryl ester transfer protein F2-intercross rats. | Herrera VL, etal., J Hypertens. 2007 Aug;25(8):1608-12. |
2. | Sex-specific QTLs and interacting loci underlie salt-sensitive hypertension and target organ complications in Dahl S/jrHS hypertensive rats. | Herrera VL, etal., Physiol Genomics. 2006 Aug 16;26(3):172-9. Epub 2006 May 23. |
3. | Differential genetic basis for pre-menopausal and post-menopausal salt-sensitive hypertension. | Herrera VL, etal., PLoS One. 2012;7(8):e43160. doi: 10.1371/journal.pone.0043160. Epub 2012 Aug 17. |
4. | Multiple susceptibility loci for radiation-induced mammary tumorigenesis in F2-intercross rats. | Herrera VL, etal., PLoS One. 2013;8(8):e72143. doi: 10.1371/journal.pone.0072143. eCollection 2013. |
5. | Is survival time after hemorrhage a heritable, quantitative trait?: an initial assessment. | Klemcke HG, etal., Shock. 2008 Jun;29(6):748-53. |
6. | Strains registered by Harlan Laboratories, Inc. | Personal communication with Harlan Laboratories |
7. | RGD Strain RSO annotation pipeline | RGD Automated Pipelines |
8. | X-linked loci influence spatial navigation performance in Dahl rats. | Ruiz-Opazo N and Tonkiss J, Physiol Genomics. 2004 Feb 13;16(3):329-33. |
9. | Genome-wide scan for quantitative trait loci influencing spatial navigation and social recognition memory in Dahl rats. | Ruiz-Opazo N and Tonkiss J, Physiol Genomics. 2006 Jul 12;26(2):145-51. |
10. | SNP and haplotype mapping for genetic analysis in the rat. | Saar K, etal., Nat Genet. 2008 May;40(5):560-6. |
Symbol | Name | Trait |
Bp287 | Blood pressure QTL 287 |
arterial blood pressure trait (VT:2000000)
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Bp288 | Blood pressure QTL 288 |
arterial blood pressure trait (VT:2000000)
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Bp289 | Blood pressure QTL 289 |
arterial blood pressure trait (VT:2000000)
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Bp290 | Blood pressure QTL 290 |
arterial blood pressure trait (VT:2000000)
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Bp291 | Blood pressure QTL 291 |
arterial blood pressure trait (VT:2000000)
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Bp292 | Blood pressure QTL 292 |
arterial blood pressure trait (VT:2000000)
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Bp293 | Blood pressure QTL 293 |
arterial blood pressure trait (VT:2000000)
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Bp294 | Blood pressure QTL 294 |
arterial blood pressure trait (VT:2000000)
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Bp295 | Blood pressure QTL 295 |
arterial blood pressure trait (VT:2000000)
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Bp296 | Blood pressure QTL 296 |
arterial blood pressure trait (VT:2000000)
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Bp297 | Blood pressure QTL 297 |
arterial blood pressure trait (VT:2000000)
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Bp387 | Blood pressure QTL 387 |
arterial blood pressure trait (VT:2000000)
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Bp388 | Blood pressure QTL 388 |
arterial blood pressure trait (VT:2000000)
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Bp389 | Blood pressure QTL 389 |
arterial blood pressure trait (VT:2000000)
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Bp390 | Blood pressure QTL 390 |
arterial blood pressure trait (VT:2000000)
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Bp391 | Blood pressure QTL 391 |
arterial blood pressure trait (VT:2000000)
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Cm61 | Cardiac mass QTL 61 |
heart mass (VT:0007028)
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Cm62 | Cardiac mass QTL 62 |
heart mass (VT:0007028)
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Cm63 | Cardiac mass QTL 63 |
heart mass (VT:0007028)
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Cm64 | Cardiac mass QTL 64 |
heart mass (VT:0007028)
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Cm65 | Cardiac mass QTL 65 |
heart mass (VT:0007028)
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Cm66 | Cardiac mass QTL 66 |
heart mass (VT:0007028)
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Glom10 | Glomerulus QTL 10 |
kidney glomerulus morphology trait (VT:0005325)
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Glom11 | Glomerulus QTL 11 |
kidney glomerulus morphology trait (VT:0005325)
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Glom12 | Glomerulus QTL 12 |
kidney glomerulus morphology trait (VT:0005325)
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Glom13 | Glomerulus QTL 13 |
kidney glomerulus morphology trait (VT:0005325)
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Glom14 | Glomerulus QTL 14 |
kidney glomerulus morphology trait (VT:0005325)
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Glom9 | Glomerulus QTL 9 |
kidney glomerulus morphology trait (VT:0005325)
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Mcs31 | Mammary carcinoma susceptibility QTL 31 |
mammary gland integrity trait (VT:0010552)
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Mcs32 | Mammary carcinoma susceptibility QTL 32 |
mammary gland integrity trait (VT:0010552)
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Mcs33 | Mammary carcinoma susceptibility QTL 33 |
mammary gland integrity trait (VT:0010552)
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Mcs34 | Mammary carcinoma susceptibility QTL 34 |
mammary gland integrity trait (VT:0010552)
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Memor1 | Memory QTL 1 |
exploratory behavior trait (VT:0010471)
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Memor10 | Memory QTL 10 |
exploratory behavior trait (VT:0010471)
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Memor11 | Memory QTL 11 |
exploratory behavior trait (VT:0010471)
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Memor12 | Memory QTL 12 |
exploratory behavior trait (VT:0010471)
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Memor13 | Memory QTL 13 |
exploratory behavior trait (VT:0010471)
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Memor14 | Memory QTL 14 |
exploratory behavior trait (VT:0010471)
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Memor15 | Memory QTL 15 |
exploratory behavior trait (VT:0010471)
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Memor16 | Memory QTL 16 |
exploratory behavior trait (VT:0010471)
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Memor17 | Memory QTL 17 |
exploratory behavior trait (VT:0010471)
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Memor2 | Memory QTL 2 |
exploratory behavior trait (VT:0010471)
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Memor3 | Memory QTL 3 |
exploratory behavior trait (VT:0010471)
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Memor4 | Memory QTL 4 |
exploratory behavior trait (VT:0010471)
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Memor5 | Memory QTL 5 |
exploratory behavior trait (VT:0010471)
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Memor6 | Memory QTL 6 |
exploratory behavior trait (VT:0010471)
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Memor7 | Memory QTL 7 |
exploratory behavior trait (VT:0010471)
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Memor8 | Memory QTL 8 |
exploratory behavior trait (VT:0010471)
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Memor9 | Memory QTL 9 |
exploratory behavior trait (VT:0010471)
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Scl54 | Serum cholesterol level QTL 54 |
blood cholesterol amount (VT:0000180)
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Scl55 | Serum cholesterol level QTL 55 |
blood cholesterol amount (VT:0000180)
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Scl56 | Serum cholesterol level QTL 56 |
blood cholesterol amount (VT:0000180)
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Scl57 | Serum cholesterol level QTL 57 |
blood cholesterol amount (VT:0000180)
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Scl58 | Serum cholesterol level QTL 58 |
blood cholesterol amount (VT:0000180)
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Number of Damaging Variants | ||||
---|---|---|---|---|
Sample | mRatBN7.2 | Rnor_6.0 | Rnor_5.0 | RGSC_v3.4 |
SR/JrHsd (MCW) | 1306 | |||
SR/JrHsd (ICL) | 634 | |||
SR/JrHsd (MCW) | 1691 | |||
SR/JrHsd (KNAW) | 742 | |||
SR/JrHsd (MCW) | 3105 | |||
SR/JrHsd (RGD) | 1106 | |||
SR/JrHsd (2020) | 2650 | |||
SR/JrHsd (2020) | 1348 |
Note Type | Note | Reference |
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strain_other | These have significantly better acquisition and spatial accuracy performance than SS/JrHsd | 1581615 |
strain_other | These have shorter survival time after controlled hemorrhage than BN/HsdMcwiCrl but longer than DA/OlaHsd. | 2302114 |