Strain Report - Rat Genome Database

Name: DA.ACI-( D15Rat6-D15Rat71 )/Kini
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: DA.ACI-(D15Rat6-D15Rat71)/Kini

Symbol:

DA.ACI-(D15Rat6-D15Rat71)/Kini

Strain:

DA.ACI-(D15Rat6-D15Rat71)

Substrain:

Kini

Full Name:

DA.ACI-(D15Rat6-D15Rat71)/Kini

RGD ID:

1581633

Citation ID:

RRID:RGD_1581633

Ontology ID:

RS:0001223

Also Known As:

C15; DA.ACI-(D15Rat6-D15Rat71)/Kini

Type:

congenic

Available Source:

Not Available

Origination:

Center for Molecular Medicine, Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, SE-17176 Stockholm, Sweden

Description:

This congenic strain contains an ACI chromosome 15 segment transferred to the DA background strain

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	28,030,665 - 78,330,139	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	15	33,219,101 - 86,002,030	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	15	37,103,190 - 89,768,452	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	15	32,638,412 - 85,456,512	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Eae19, a new locus on rat chromosome 15 regulating experimental autoimmune encephalomyelitis.	Sheng JR, etal., Genetics 2005 May;170(1):283-9. Epub 2005 Feb 16.

Region

Position Markers

Flank 1 / 1 (D15Rat6)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	28,030,665 - 28,030,847 (+)	MAPPER
Rnor_6.0	15	33,219,101 - 33,219,282	NCBI
Rnor_5.0	15	37,103,190 - 37,103,371	UniSTS
RGSC_v3.4	15	32,638,412 - 32,638,778	RGD
RGSC_v3.4	15	32,638,506 - 32,638,707	UniSTS
RGSC_v3.1	15	32,654,112 - 32,654,478	RGD
RH 2.0 Map	15	174.3	RGD
SHRSP x BN Map	15	25.6198	RGD
Cytogenetic Map	15	p13	UniSTS

Flank 2 / 1 (D15Rat71)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	78,329,942 - 78,330,139 (+)	MAPPER
Rnor_6.0	15	86,001,834 - 86,002,030	NCBI
Rnor_5.0	15	89,768,256 - 89,768,452	UniSTS
RGSC_v3.4	15	85,456,316 - 85,456,512	UniSTS
RGSC_v3.4	15	85,456,315 - 85,456,512	RGD
RGSC_v3.1	15	85,472,096 - 85,472,292	RGD
Celera	15	77,523,991 - 77,524,187	UniSTS
RH 3.4 Map	15	541.3	RGD
RH 3.4 Map	15	541.3	UniSTS
RH 2.0 Map	15	419.4	RGD
SHRSP x BN Map	15	50.5798	RGD
FHH x ACI Map	15	63.69	RGD
Cytogenetic Map	15	q21	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_immunology	congenic strain has experimental allergic encephalomyelitis (Eae) scores lower than those observed in DA parental background	1549617

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.ACI-(D15Rat6-D15Rat71)/Kini