Strain Report - Rat Genome Database

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Strain: DA.ACI-(D15Rat6-D15Rat13)/Kini

Symbol: DA.ACI-(D15Rat6-D15Rat13)/Kini
Strain: DA.ACI-(D15Rat 6-D15Rat13)
Substrain: Kini
Full Name: DA.ACI-(D15Rat 6-D15Rat13)/Kini
RGD ID: 1581628
Citation ID: RRID:RGD_1581628
Ontology ID: RS:0001221
Previously known as: C15R1; DA.ACI-(D15Rat 6-D15Rat13)/Kini; DA.ACI-(D15Rat6-D15Rat13)/Kini
Type: congenic
Source: Center for Molecular Medicine, Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, SE-17176 Stockholm, Sweden
Origin: This congenic strain contains an ACI chromosome 15 segment transferred to the DA background strain
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,030,665 - 38,692,741RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01533,219,101 - 47,814,460RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01537,103,190 - 51,565,184RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41532,638,412 - 43,772,355RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Eae19, a new locus on rat chromosome 15 regulating experimental autoimmune encephalomyelitis. Sheng JR, etal., Genetics 2005 May;170(1):283-9. Epub 2005 Feb 16.


Position Markers

Flank 1 / 1 (D15Rat6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,030,665 - 28,030,847 (+)MAPPER
Rnor_6.01533,219,101 - 33,219,282NCBI
Rnor_5.01537,103,190 - 37,103,371UniSTS
RGSC_v3.41532,638,412 - 32,638,778RGD
RGSC_v3.41532,638,506 - 32,638,707UniSTS
RGSC_v3.11532,654,112 - 32,654,478RGD
RH 2.0 Map15174.3RGD
SHRSP x BN Map1525.6198RGD
Cytogenetic Map15p13UniSTS

Flank 2 / 1 (D15Rat13)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21538,692,566 - 38,692,741 (+)MAPPER
Rnor_6.01547,814,286 - 47,814,460NCBI
Rnor_5.01551,565,010 - 51,565,184UniSTS
RGSC_v3.41543,772,180 - 43,772,355RGD
RGSC_v3.41543,772,181 - 43,772,355UniSTS
RGSC_v3.11543,787,880 - 43,788,055RGD
Celera1538,368,656 - 38,368,830UniSTS
RH 2.0 Map15263.0RGD
SHRSP x BN Map1533.5499RGD
FHH x ACI Map1544.17RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_immunology No significant difference observed between experimental allergic encephalomyelitis (Eae) scores of the congenic strain and DA parental background strain 1549617