Strain Report - Rat Genome Database

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Strain: SS.SHR-(D11Mgh3-D11Rat31)/Mco

Symbol: SS.SHR-(D11Mgh3-D11Rat31)/Mco
Strain: SS.SHR-(D11Mgh3-D11Rat31)
Substrain: Mco
RGD ID: 1579691
Citation ID: RRID:RGD_1579691
Ontology ID: RS:0001558
Also known as: S.SHR(11); SS.SHR-(D11Mgh3-D11Rat31)/Mco
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio
Origin: Congenic strain from the parental SS/Jr and SHR/NHsd inbred strains.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2118,200,022 - 66,422,316RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0116,673,351 - 69,649,875RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01110,373,455 - 72,739,854RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4118,176,272 - 68,234,949RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
1. Garrett MR, etal., Physiol Genomics. 2006 Mar 13;25(1):39-49.
2. RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D11Mgh3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21166,422,148 - 66,422,316 (+)MAPPER
Rnor_6.01169,649,708 - 69,649,875NCBI
Rnor_5.01172,739,687 - 72,739,854UniSTS
RGSC_v3.41168,234,781 - 68,234,949RGD
RGSC_v3.41168,234,782 - 68,234,949UniSTS
RGSC_v3.11168,292,371 - 68,292,538RGD
Celera1165,874,140 - 65,874,287UniSTS
RH 3.4 Map11411.0UniSTS
RH 3.4 Map11411.0RGD
Cytogenetic Map11q22UniSTS

Flank 2 / 1 (D11Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2118,200,022 - 8,200,174 (+)MAPPER
Rnor_6.0116,673,351 - 6,673,500NCBI
Rnor_5.01110,373,455 - 10,373,604UniSTS
RGSC_v3.4118,176,272 - 8,176,422RGD
RGSC_v3.4118,176,273 - 8,176,422UniSTS
RGSC_v3.1118,176,272 - 8,176,422RGD
Celera118,136,420 - 8,136,569UniSTS
RH 2.0 Map11751.5RGD
Cytogenetic Map11 RGD
Strain QTL Data
Symbol Name Trait
Pur10 Proteinuria QTL 10 urine albumin amount   (VT:0002871)    
Uae35 Urinary albumin excretion QTL 35 urine albumin amount   (VT:0002871)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Congenic strain showed more susceptibility to kidney damage than parental SS strain. 1578520
strain_phys_biochem Congenic strain showed a significantly higher urine protein (65%) and albumin (200%) excretion levels compared with the SS parental strain. 1578520