Strain Report - Rat Genome Database

Name: LEW.BN-( D10Mco17-D10Rat133 )/Ciml
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Strain Registration

General

Strain: LEW.BN-(D10Mco17-D10Rat133)/Ciml

Symbol:

LEW.BN-(D10Mco17-D10Rat133)/Ciml

Strain:

LEW.BN-(D10Mco17-D10Rat133)

Substrain:

Ciml

RGD ID:

1578711

Citation ID:

RRID:RGD_1578711

Ontology ID:

RS:0001357

Previously known as:

LEW.BNc10-I; LEW.BN-(D10Mco17-D10Rat133)/Ciml

Type:

congenic

Source:

Institut National de la Sante et de la Recherche Medicale, Toulouse, France

Origin:

Congenic strain created from parental LEW/Rj and BN/Rj strains.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	43,593,509 - 43,593,911	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	45,157,430 - 45,157,831	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	44,914,976 - 64,823,355	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	45,105,978 - 65,668,639	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

toxoplasmosis (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased susceptibility to parasitic infection (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

percentage of study population displaying Toxoplasma gondii brain cysts at a point in time

serum anti-toxoplasma antibody titer

References

References - curated

#	Reference Title	Reference Citation
1.	The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms.	Cavailles P, etal., Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):744-9. Epub 2006 Jan 6.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mco17)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	43,593,509 - 43,593,911 (+)	MAPPER
Rnor_6.0	10	45,157,430 - 45,157,831	NCBI
Rnor_5.0	10	44,914,976 - 44,915,377	UniSTS
RGSC_v3.4	10	45,105,978 - 45,106,380	RGD
RGSC_v3.4	10	45,105,979 - 45,106,380	UniSTS
RGSC_v3.1	10	45,119,601 - 45,120,003	RGD
Celera	10	42,864,444 - 42,864,845	UniSTS
Cytogenetic Map	10	q22	UniSTS

Flank 2 / 1 (D10Rat133)

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	10	64,823,161 - 64,823,355	NCBI
RGSC_v3.4	10	65,668,446 - 65,668,639	RGD
RGSC_v3.1	10	65,682,069 - 65,682,262	RGD
RH 2.0 Map	10	614.3	RGD
SHRSP x BN Map	10	46.5699	RGD
FHH x ACI Map	10	52.6699	RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_infection	Cogenic strain showed susceptibility to infection from Toxoplasma gondii.	1578521

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message

Strain: LEW.BN-(D10Mco17-D10Rat133)/Ciml

Mammalian Phenotype

Related Phenotype Data for Term "LEW.BN-(D10Mco17-D10Rat133)/Ciml" (RS:0001357)