Strain Report - Rat Genome Database

Name: LEW.BN-( D10Mgh7-D10Rat221 )/Ciml
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: LEW.BN-(D10Mgh7-D10Rat221)/Ciml

Symbol:

LEW.BN-(D10Mgh7-D10Rat221)/Ciml

Strain:

LEW.BN-(D10Mgh7-D10Rat221)

Substrain:

Ciml

RGD ID:

1578708

Citation ID:

RRID:RGD_1578708

Ontology ID:

RS:0001359

Previously known as:

LEW.BNc10-F; LEW.BN-(D10Mgh7-D10Rat221)/Ciml

Type:

congenic

Source:

Institut National de la Sante et de la Recherche Medicale, Toulouse, France

Origin:

Congenic strain created from parental LEW/Rj and BN/Rj strains.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	54,098,674 - 54,098,889	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	55,978,483 - 55,978,697	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	55,720,558 - 55,720,772	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	56,170,962 - 56,171,177	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

toxoplasmosis (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased susceptibility to parasitic infection (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

View expanded data table

Clinical Measurement

percentage of study population displaying Toxoplasma gondii brain cysts at a point in time

serum anti-toxoplasma antibody titer

References

References - curated

#	Reference Title	Reference Citation
1.	The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms.	Cavailles P, etal., Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):744-9. Epub 2006 Jan 6.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mgh7)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	54,098,674 - 54,098,889 (+)	MAPPER
Rnor_6.0	10	55,978,483 - 55,978,697	NCBI
Rnor_5.0	10	55,720,558 - 55,720,772	UniSTS
RGSC_v3.4	10	56,170,962 - 56,171,177	RGD
RGSC_v3.4	10	56,170,963 - 56,171,177	UniSTS
RGSC_v3.1	10	56,184,585 - 56,184,800	RGD
Celera	10	53,255,124 - 53,255,338	UniSTS
Cytogenetic Map	10		RGD

Flank 2 / 1 (D10Rat221)

Rat Assembly	Chr	Position (strand)	Source
Celera	10	68,728,460 - 68,728,695	UniSTS
FHH x ACI Map	10	58.1099	UniSTS
FHH x ACI Map	10	58.1099	RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_infection	Conenic strain showed susceptibility to infection from Toxoplasma gondii.	1578521

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.BN-(D10Mgh7-D10Rat221)/Ciml

Mammalian Phenotype

Related Phenotype Data for Term "LEW.BN-(D10Mgh7-D10Rat221)/Ciml" (RS:0001359)