Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.LEW-(D17Chm14-D17Rat181)/Ayd

Symbol: SS.LEW-(D17Chm14-D17Rat181)/Ayd
Strain: SS.LEW-(D17Chm14-D17Rat181)
Substrain: Ayd
RGD ID: 1559035
Citation ID: RRID:RGD_1559035
Ontology ID: RS:0001491
Previously known as: C17S.L2; SS.LEW-(D17Chm14-D17Rat181)/Ayd
Type: congenic
Source: Research Centre, Centre Hosp Univ Montreal, Quebec, Canada
Origin: This congenic strain contains a LEW/Crlc chromosome 17 segment transferred to the SS/Jr recipient strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21731,896,010 - 68,784,138RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01733,208,959 - 72,580,782RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01735,100,574 - 74,265,481RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41738,257,211 - 80,182,186RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. Complete and overlapping congenics proving the existence of a quantitative trait locus for blood pressure on Dahl rat chromosome 17. Grondin M, etal., Physiol Genomics 2005 Mar 21;21(1):112-6. Epub 2005 Jan 4.
3. Neuronal Responsiveness to Central Na+ in 2 Congenic Strains of Dahl Salt-Sensitive Rats. Huang BS, etal., Hypertension. 2007 Apr 9;.
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D17Chm14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21768,783,937 - 68,784,138 (+)MAPPER
Rnor_6.01772,580,584 - 72,580,782NCBI
Rnor_5.01774,265,283 - 74,265,481UniSTS
RGSC_v3.41780,181,988 - 80,182,186UniSTS
Celera1768,272,231 - 68,272,429UniSTS
Cytogenetic Map17 RGD

Flank 2 / 1 (D17Rat181)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21731,896,010 - 31,896,169 (+)MAPPER
Rnor_6.01733,208,959 - 33,209,117NCBI
Rnor_5.01735,100,574 - 35,100,732UniSTS
RGSC_v3.41738,257,211 - 38,257,371RGD
RGSC_v3.41738,257,213 - 38,257,371UniSTS
RGSC_v3.11738,260,052 - 38,260,212RGD
Celera1731,458,614 - 31,458,772UniSTS
SHRSP x BN Map1726.9699RGD
SHRSP x BN Map1726.9699UniSTS
Cytogenetic Map17p12UniSTS
Strain QTL Data
Symbol Name Trait
Am17 Aortic mass QTL 17 aorta mass   (VT:0002845)    
Bp278 Blood pressure QTL 278 arterial blood pressure trait   (VT:2000000)    
Cm118 Cardiac mass QTL 118 heart mass   (VT:0007028)    
Cm119 Cardiac mass QTL 119 heart left ventricle mass   (VT:0007031)    
Cm120 Cardiac mass QTL 120 heart right ventricle mass   (VT:0007033)    
Kidm70 Kidney mass QTL 70 kidney mass   (VT:0002707)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem blood pressure is lower than that of parental strain SS/Jr 1547847