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Strain Registration

Strain: SS.LEW-(D17Rat65-D17Chm2)/Ayd

Symbol: SS.LEW-(D17Rat65-D17Chm2)/Ayd
Strain: SS.LEW-(D17Rat65-D17Chm2)
Substrain: Ayd
RGD ID: 1559032
Citation ID: RRID:RGD_1559032
Ontology ID: RS:0001494
Previously known as: C17S.L3; SS.LEW-(D17Rat65-D17Chm2)/Ayd
Type: congenic
Source: Research Centre, Centre Hosp Univ Montreal, Quebec, Canada
Origin: This congenic substrain contains a LEW/Crlc chromosome 17 segment transferred to the SS/Jr recipient strain; derived by crossing congenic strain SS.LEW-(D17Rat65-Prl) with SS/Jr, F2 animals were screened with D17Rat65 and Prl to identify regions with crossovers within this chromosome 17 segment
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21770,973,784 - 82,479,847RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01774,823,053 - 86,731,080RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01776,483,116 - 88,435,496RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41782,247,891 - 93,930,006RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D17Rat65-D17Chm2)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
heart mass  EXP 1599557 RGD 
kidney mass  EXP 1599557 RGD 

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. Complete and overlapping congenics proving the existence of a quantitative trait locus for blood pressure on Dahl rat chromosome 17. Grondin M, etal., Physiol Genomics 2005 Mar 21;21(1):112-6. Epub 2005 Jan 4.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D17Rat65)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21782,479,461 - 82,479,847 (+)MAPPER
Rnor_6.01786,730,695 - 86,731,080NCBI
Rnor_5.01788,435,111 - 88,435,496UniSTS
RGSC_v3.41793,929,621 - 93,930,006UniSTS
RGSC_v3.11793,940,453 - 93,940,839RGD
Celera1781,749,932 - 81,750,317UniSTS
RH 3.4 Map17835.8UniSTS
RH 3.4 Map17835.8RGD
RH 2.0 Map17694.9RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1765.42RGD

Flank 2 / 1 (D17Chm2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21770,973,784 - 70,974,005 (+)MAPPER
Rnor_6.01774,823,053 - 74,823,273NCBI
Rnor_5.01776,483,116 - 76,483,336UniSTS
RGSC_v3.41782,247,891 - 82,248,111UniSTS
Celera1770,435,844 - 70,436,064UniSTS
Cytogenetic Map17 RGD
Strain QTL Data
Symbol Name Trait
Cm121 Cardiac mass QTL 121 heart mass   (VT:0007028)    
Kidm40 Kidney mass QTL 40 kidney mass   (VT:0002707)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem no significant difference in blood pressure compared to parental strain SS/Jr 1547847

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SS.LEW-(D17Rat65-D17Chm2)/Ayd    SS.LEW-(D17Rat65-D17Chm2)/Ayd    Name updated 68913 APPROVED
2013-08-28 SS.LEW-(D17Rat65-D17Chm2)/Ayd    SS.LEW-(D17Rat65-D17Chm2)/Ayd    Name updated 68913 APPROVED