Strain Report - Rat Genome Database

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Strain: WKY.SHR-(D2Rat27-D2Rat243)

Symbol: WKY.SHR-(D2Rat27-D2Rat243)
Strain: WKY.SHR-(D2Rat27-D2Rat243)
RGD ID: 1359006
Citation ID: RRID:RGD_1359006
Ontology ID: RS:0001032
Also Known As: 2a-E; WKY.SHR-(D2Rat27-D2Rat243)
Type: congenic
Available Source: Not Available
Origination: Dept Pharmacology, Univ. of California San Diego, La Jolla, CA USA
Description: This congenic substrain was contructed by repeated backcrossing of congenic strain WKY.SHR-(D2Rat174-D2Rat185)/NCrl to parental strain WKY/NCrl
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2294,359,407 - 212,719,943RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0296,556,622 - 228,759,752RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02116,297,660 - 248,110,514RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4296,481,750 - 221,307,793RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
WKY.SHR-(D2Rat27-D2Rat243)  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
arterial blood pressure trait  EXP 629618 RGD 


References

References - curated
# Reference Title Reference Citation
1. Reciprocal rat chromosome 2 congenic strains reveal contrasting blood pressure and heart rate QTL. Alemayehu A, etal., Physiol Genomics 2002 Sep 3;10(3):199-210.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2294,359,407 - 94,359,546 (+)MAPPER
Rnor_6.0296,556,622 - 96,556,760NCBI
Rnor_5.02116,297,660 - 116,297,798UniSTS
RGSC_v3.4296,481,750 - 96,482,076RGD
RGSC_v3.4296,481,754 - 96,481,892UniSTS
RGSC_v3.1296,426,716 - 96,426,854RGD
Celera289,901,157 - 89,901,295UniSTS
RH 3.4 Map2597.9UniSTS
RH 3.4 Map2597.9RGD
RH 2.0 Map2499.5RGD
SHRSP x BN Map236.5198RGD
FHH x ACI Map244.3099RGD

Flank 2 / 1 (D2Rat243)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22212,719,781 - 212,719,943 (+)MAPPER
Rnor_6.02228,759,591 - 228,759,752NCBI
Rnor_5.02248,110,353 - 248,110,514UniSTS
RGSC_v3.42221,307,632 - 221,307,793UniSTS
RGSC_v3.42221,307,631 - 221,307,793RGD
RGSC_v3.12221,294,199 - 221,294,360RGD
Celera2205,112,600 - 205,112,761UniSTS
RH 3.4 Map21545.6RGD
RH 3.4 Map21545.6UniSTS
RH 2.0 Map21099.7RGD
SHRSP x BN Map284.1098RGD
Strain QTL Data
Symbol Name Trait
Bp276 Blood pressure QTL 276 arterial blood pressure trait   (VT:2000000)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 WKY.SHR-(D2Rat27-D2Rat243   WKY.SHR-(D2Rat27-D2Rat243   Name updated 68913 APPROVED
2013-08-28 WKY.SHR-(D2Rat27-D2Rat243   WKY.SHR-(D2Rat27-D2Rat243   Name updated 68913 APPROVED