Strain Report - Rat Genome Database

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Strain: SHR.WKY-(D2Rat40-D2Rat50)

Symbol: SHR.WKY-(D2Rat40-D2Rat50)
Strain: SHR.WKY-(D2Rat40-D2Rat50)
RGD ID: 1358992
Citation ID: RRID:RGD_1358992
Ontology ID: RS:0000736
Also Known As: 2d;SHR/lj-WKY/lj-2d; SHR.WKY-(D2Rat40-D2Rat50)
Type: congenic
Available Source: Not Available
Origination: Dept Pharmacology, Univ. of California San Diego, La Jolla, CA USA
Description: Congenic strains were constructed by repeated backcross of an (SHR/NCrl x WKY/NCrl)F1 to the SHR/NCrl recipient strain with selection for chromosome 2 markers
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22157,142,078 - 192,625,452RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02169,852,670 - 207,612,467RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02189,197,858 - 227,035,367RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42163,154,227 - 200,390,471RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Reciprocal rat chromosome 2 congenic strains reveal contrasting blood pressure and heart rate QTL. Alemayehu A, etal., Physiol Genomics 2002 Sep 3;10(3):199-210.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat40)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22157,142,078 - 157,142,209 (+)MAPPER
Rnor_6.02169,852,670 - 169,852,800NCBI
Rnor_5.02189,197,858 - 189,197,988UniSTS
RGSC_v3.42163,154,227 - 163,154,358RGD
RGSC_v3.42163,154,228 - 163,154,358UniSTS
RGSC_v3.12163,104,191 - 163,104,321RGD
Celera2151,402,589 - 151,402,703UniSTS
RH 3.4 Map21025.6UniSTS
RH 3.4 Map21025.6RGD
RH 2.0 Map2778.0RGD
SHRSP x BN Map266.0998RGD
FHH x ACI Map269.9399RGD

Flank 2 / 1 (D2Rat50)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22192,625,307 - 192,625,452 (+)MAPPER
Rnor_6.02207,612,323 - 207,612,467NCBI
Rnor_5.02227,035,223 - 227,035,367UniSTS
RGSC_v3.42200,390,326 - 200,390,471RGD
RGSC_v3.42200,390,327 - 200,390,471UniSTS
RGSC_v3.12200,352,887 - 200,353,226RGD
Celera2185,090,977 - 185,091,121UniSTS
SHRSP x BN Map274.0098UniSTS
SHRSP x BN Map274.0098RGD
Strain QTL Data
Symbol Name Trait
Bp277 Blood pressure QTL 277 arterial blood pressure trait   (VT:2000000)    
Hrtrt18 Heart rate QTL 18 heart pumping trait   (VT:2000009)    

Additional Information