Strain Report - Rat Genome Database

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Strain: SS.MNS-(D2Chm25-D2Rat131)/Ayd

Symbol: SS.MNS-(D2Chm25-D2Rat131)/Ayd
Strain: SS.MNS-(D2Chm25-D2Rat131)
Substrain: Ayd
RGD ID: 1358169
Citation ID: RRID:RGD_1358169
Ontology ID: RS:0000899
Also Known As: SS.MNS-(D2Chm25-D2Rat131)/Ayd; C2S.M9; DSS.MNS-(D2Chm25-D2Rat131)/Lt
Type: congenic
Available Source: Not Available
Origination: Centre Hospitalier de L'Universite de Montreal (CHUM), Montreal, Quebec,Canada
Description: Congenic strain was created by backcrossing congenic strain SS.MNS-(D2Chm90-D2Wox37)/Lt strain into the parental Dahl Salt-sensitive (SS) strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22166,144,095 - 172,711,135RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02179,779,225 - 186,612,024RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02199,188,066 - 206,015,340RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42172,459,883 - 179,302,663RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.MNS-(D2Chm25-D2Rat131)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
aorta mass  EXP 1599557 RGD 
arterial blood pressure trait  EXP 1599557 RGD 
body mass  EXP 1599557 RGD 
heart left ventricle mass  EXP 1599557 RGD 
heart mass  EXP 1599557 RGD 
kidney mass  EXP 1599557 RGD 

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
3. Multiple quantitative trait loci for blood pressure interacting epistatically and additively on dahl rat chromosome 2. Dutil J, etal., Hypertension 2005 Apr;45(4):557-64. Epub 2005 Feb 28.
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat131)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,710,921 - 172,711,135 (+)MAPPER
Rnor_6.02186,611,811 - 186,612,024NCBI
Rnor_5.02206,015,127 - 206,015,340UniSTS
RGSC_v3.42179,302,450 - 179,302,663UniSTS
RGSC_v3.42179,302,449 - 179,302,662RGD
RGSC_v3.12179,252,555 - 179,252,768RGD
Celera2166,665,366 - 166,665,579UniSTS
RH 3.4 Map21130.0RGD
RH 3.4 Map21130.0UniSTS
SHRSP x BN Map270.0898UniSTS
SHRSP x BN Map270.0898RGD
FHH x ACI Map276.5599RGD

Flank 2 / 1 (D2Chm25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22166,144,095 - 166,144,339 (+)MAPPER
Rnor_6.02179,779,225 - 179,779,468NCBI
Rnor_5.02199,188,066 - 199,188,309UniSTS
RGSC_v3.42172,459,883 - 172,460,126UniSTS
Celera2160,184,548 - 160,184,782UniSTS
Cytogenetic Map2q33UniSTS
Strain QTL Data
Symbol Name Trait
Am2 Aortic mass QTL 2 aorta mass   (VT:0002845)    
Bp257 Blood pressure QTL 257 arterial blood pressure trait   (VT:2000000)    
Bw179 Body weight QTL 179 body mass   (VT:0001259)    
Cm85 Cardiac mass QTL 85 heart mass   (VT:0007028)    
Cm86 Cardiac mass QTL 86 heart left ventricle mass   (VT:0007031)    
Kidm61 Kidney mass QTL 61 kidney mass   (VT:0002707)    

Additional Information