Strain Report - Rat Genome Database

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Strain: SS.LEW-(D16Rat38-D16Chm66)/Ayd

Symbol: SS.LEW-(D16Rat38-D16Chm66)/Ayd
Strain: SS.LEW-(D16Rat38-D16Chm66)
Substrain: Ayd
RGD ID: 1358161
Citation ID: RRID:RGD_1358161
Ontology ID: RS:0000860
Previously known as: SS.LEW-(D16Rat38-D16Chm66)/Ayd; C16S.L3; S.LEW-(D16Rat38-D16Chm66)/Lt
Type: congenic
Source: Research Centre, Centre Hospitalier de l'Universite de Monteal (CHUM), Quebec, Canada
Origin: This congenic strain originated from a SS/Jr parental strain.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,995,225 - 8,336,378RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0163,439,525 - 9,316,554RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0163,405,986 - 11,276,947RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4163,080,748 - 8,612,621RGD_MAPPER_PIPELINERGSC3.4

Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D16Rat38-D16Chm66)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
kidney mass  EXP 1599557 RGD 


References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. Combining congenic coverage with gene profiling in search of candidates for blood pressure quantitative trait loci in Dahl rats. Moujahidine M, etal., Hypertens Res 2004 Mar;27(3):203-12.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D16Rat38)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2168,336,147 - 8,336,378 (+)MAPPER
mRatBN7.2168,336,147 - 8,336,281 (+)MAPPER
Rnor_6.0169,316,324 - 9,316,554NCBI
Rnor_6.0169,316,324 - 9,316,457NCBI
Rnor_5.01611,276,717 - 11,276,850UniSTS
Rnor_5.01611,276,717 - 11,276,947UniSTS
RGSC_v3.4168,612,391 - 8,612,524UniSTS
RGSC_v3.4168,612,390 - 8,612,621RGD
RGSC_v3.4168,612,391 - 8,612,621UniSTS
RGSC_v3.1168,612,389 - 8,612,619RGD
Celera166,869,813 - 6,870,043UniSTS
Celera166,869,910 - 6,870,043UniSTS
RH 3.4 Map1682.4RGD
RH 3.4 Map1682.4UniSTS
RH 2.0 Map1637.4RGD
SHRSP x BN Map163.4699RGD
FHH x ACI Map165.3399RGD
Cytogenetic Map16p16UniSTS

Flank 2 / 1 (D16Chm66)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,995,225 - 2,995,463 (+)MAPPER
Rnor_6.0163,439,525 - 3,439,762NCBI
Rnor_5.0163,405,986 - 3,406,223UniSTS
RGSC_v3.4163,080,748 - 3,080,985UniSTS
Celera162,957,693 - 2,957,930UniSTS
Cytogenetic Map16p16UniSTS
Strain QTL Data
Symbol Name Trait
Kidm39 Kidney mass QTL 39 kidney mass   (VT:0002707)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem Congenic strain has the same blood pressure levels as parental SS/Jr strain 1300037