Strain Report - Rat Genome Database

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Strain: SS.LEW-(D3Rat52-D3Rat17)/Ayd

Symbol: SS.LEW-(D3Rat52-D3Rat17)/Ayd
Strain: SS.LEW-(D3Rat52-D3Rat17)
Substrain: Ayd
RGD ID: 1357988
Citation ID: RRID:RGD_1357988
Ontology ID: RS:0000878
Also Known As: S.L.1; SS.LEW-(D3Rat52-D3Rat17)/Ayd; S.L1; SS.LEW-(D3Rat52-D3Rat17)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: A segment of chromosome 3 was transferred from LEW into the SS background. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2318,311,454 - 121,056,321RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0314,090,411 - 127,023,997RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0319,410,399 - 133,513,825RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4314,051,872 - 121,619,110RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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References - curated
# Reference Title Reference Citation
1. Quantitative trait loci with opposing blood pressure effects demonstrating epistasis on Dahl rat chromosome 3. Palijan A, etal., Physiol Genomics 2003 Sep 29;15(1):1-8.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D3Rat52)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2318,311,454 - 18,311,610 (+)MAPPER
Rnor_6.0314,090,411 - 14,090,566NCBI
Rnor_5.0319,410,399 - 19,410,554UniSTS
RGSC_v3.4314,051,872 - 14,052,028RGD
RGSC_v3.4314,051,873 - 14,052,028UniSTS
RGSC_v3.1313,948,245 - 13,948,400RGD
Celera313,028,531 - 13,028,700UniSTS
RH 3.4 Map3157.8RGD
RH 3.4 Map3157.8UniSTS
RH 2.0 Map347.5RGD
SHRSP x BN Map34.6298RGD
Cytogenetic Map3p11UniSTS

Flank 2 / 1 (D3Rat17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23121,056,165 - 121,056,321 (+)MAPPER
Rnor_6.03126,575,595 - 126,575,750NCBI
Rnor_6.03127,023,842 - 127,023,997NCBI
Rnor_5.03133,062,559 - 133,062,714UniSTS
Rnor_5.03133,513,670 - 133,513,825UniSTS
RGSC_v3.43121,618,954 - 121,619,110RGD
RGSC_v3.43121,618,955 - 121,619,110UniSTS
RGSC_v3.13121,524,528 - 121,524,683RGD
Celera3119,839,022 - 119,839,177UniSTS
RH 3.4 Map31046.3UniSTS
RH 3.4 Map31046.3RGD
RH 2.0 Map3713.5RGD
SHRSP x BN Map358.5198RGD
FHH x ACI Map373.54RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Mean arterial, diastolic and systolic pressures of this strain are much lower than the SS strain 724791