Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.LEW-(D8Rat56-D8Rat51)/Ayd

Symbol: SS.LEW-(D8Rat56-D8Rat51)/Ayd
Strain: SS.LEW-(D8Rat56-D8Rat51)
Substrain: Ayd
RGD ID: 1357189
Citation ID: RRID:RGD_1357189
Ontology ID: RS:0000840
Also Known As: SS.LEW-(D8Rat56-D8Rat51)/Ayd; C8S.L2; SS.LEW-(D8Rat58-D8Chm12)/Ayd; SS.LEW-(D8Rat58-D8Chm12)/Ayd; S.LEW-(D8Rat56-D8Rat51)/Lt
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: Congenic strain produced from a SS/Jr strain and a LEW/CrlBR strain purchased from Charles Rivers, Quebec, Canada
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.288,462,195 - 28,243,068RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.089,531,047 - 30,918,267RGD_MAPPER_PIPELINERnor6.0
Rnor_5.089,505,886 - 30,947,391RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.488,294,860 - 29,559,867RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Dissecting quantitative trait loci into opposite blood pressure effects on Dahl rat chromosome 8 by congenic strains. Ariyarajah A, etal., J Hypertens 2004 Aug;22(8):1495-502.
2. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
3. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D8Rat56)
Rat AssemblyChrPosition (strand)Source
mRatBN7.288,462,195 - 8,462,368 (+)MAPPER
Rnor_6.089,531,047 - 9,531,219NCBI
Rnor_5.089,505,886 - 9,506,058UniSTS
RGSC_v3.488,294,860 - 8,295,033RGD
RGSC_v3.488,294,861 - 8,295,033UniSTS
RGSC_v3.188,294,861 - 8,295,033RGD
Celera89,971,696 - 9,971,868UniSTS
RH 3.4 Map853.0UniSTS
RH 3.4 Map853.0RGD
RH 2.0 Map886.2RGD
SHRSP x BN Map88.33RGD
FHH x ACI Map82.56RGD

Flank 2 / 1 (D8Rat51)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2828,242,912 - 28,243,068 (+)MAPPER
Rnor_6.0830,918,112 - 30,918,267NCBI
Rnor_5.0830,947,236 - 30,947,391UniSTS
RGSC_v3.4829,559,450 - 29,559,605UniSTS
RGSC_v3.4829,559,446 - 29,559,867RGD
RGSC_v3.1829,565,716 - 29,565,871RGD
Celera829,715,758 - 29,715,919UniSTS
RH 3.4 Map8226.7RGD
RH 3.4 Map8226.7UniSTS
RH 2.0 Map8178.7RGD
SHRSP x BN Map819.9RGD
Strain QTL Data
Symbol Name Trait
Am9 Aortic mass QTL 9 aorta mass   (VT:0002845)    
Bp315 Blood pressure QTL 315 arterial blood pressure trait   (VT:2000000)    
Bw184 Body weight QTL 184 body mass   (VT:0001259)    
Cm102 Cardiac mass QTL 102 heart mass   (VT:0007028)    
Cm103 Cardiac mass QTL 103 heart left ventricle mass   (VT:0007031)    

Additional Information