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Strain Registration

General

Strain: LEW.BN-(D10Mgh7-D10Rat27)/Rj

Symbol:

LEW.BN-(D10Mgh7-D10Rat27)/Rj

Strain:

LEW.BN-(D10Mgh7-D10Rat27)

Substrain:

RGD ID:

1331826

Citation ID:

RRID:RGD_1331826

Ontology ID:

RS:0000502

Also Known As:

LEW.BN-(D10Mgh7-D10Rat27)/Rj; LEW.BNc10F; LEW.BN-(D10Mgh7-D10Rat27)/Rj

Type:

congenic

Available Source:

Not Available

Origination:

Institut National de la Sante et de la Recherche Medicale, Toulouse, France

Description:

This congenic strain was derived from female LEW rats and male BN rats obtained from the Janvier breeding center, Le Genest-Saint-Isle, France. F1 offsprings were crossed with LEW females to transfer the desired locus to LEW background.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	54,597,481 - 73,950,353	RGD_MAPPER_PIPELINE
mRatBN7.2	10	54,098,674 - 73,453,136	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	55,978,483 - 75,983,805	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	10	55,720,558 - 74,127,968	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	10	56,170,962 - 77,092,169	RGD_MAPPER_PIPELINE	RGSC_v3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Studies of congenic lines in the Brown Norway rat model of Th2-mediated immunopathological disorders show that the aurothiopropanol sulfonate-induced immunological disorder (Aiid3) locus on chromosome 9 plays a major role compared to Aiid2 on chromosome 10.	Mas M, etal., J Immunol 2004 May 15;172(10):6354-61.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mgh7)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	54,597,481 - 54,597,696 (+)	Marker Load Pipeline
mRatBN7.2	10	54,098,674 - 54,098,889 (+)	MAPPER
Rnor_6.0	10	55,978,483 - 55,978,697	NCBI
Rnor_5.0	10	55,720,558 - 55,720,772	UniSTS
RGSC_v3.4	10	56,170,963 - 56,171,177	UniSTS
RGSC_v3.4	10	56,170,962 - 56,171,177	RGD
Celera	10	53,255,124 - 53,255,338	UniSTS
RGSC_v3.1	10	56,184,585 - 56,184,800	RGD
Cytogenetic Map	10		RGD

Flank 2 / 1 (D10Rat27)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,950,209 - 73,950,353 (+)	Marker Load Pipeline
mRatBN7.2	10	73,452,992 - 73,453,136 (+)	MAPPER
Rnor_6.0	10	75,983,662 - 75,983,805	NCBI
Rnor_5.0	10	74,127,825 - 74,127,968	UniSTS
RGSC_v3.4	10	77,091,834 - 77,092,169	RGD
RGSC_v3.4	10	77,091,892 - 77,092,035	UniSTS
Celera	10	72,360,629 - 72,360,772	UniSTS
RGSC_v3.1	10	77,106,262 - 77,106,405	RGD
RH 3.4 Map	10	681.99	RGD
RH 3.4 Map	10	681.99	UniSTS
RH 2.0 Map	10	766.2	RGD
SHRSP x BN Map	10	50.9999	RGD
FHH x ACI Map	10	59.2399	RGD
Cytogenetic Map	10	q26	UniSTS

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.BN-(D10Mgh7-D10Rat27)/Rj