Strain Report - Rat Genome Database

Name: LEW.BN-( D10Rat43-D10Mco4 )/Rj
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: LEW.BN-(D10Rat43-D10Mco4)/Rj

Symbol:

LEW.BN-(D10Rat43-D10Mco4)/Rj

Strain:

LEW.BN-(D10Rat43-D10Mco4)

Substrain:

RGD ID:

1331818

Citation ID:

RRID:RGD_1331818

Ontology ID:

RS:0000505

Previously known as:

LEW.BNc10D; LEW.BN-(D10Rat43-D10Mco4)/Rj; LEW.BN-(D10Rat43-D10Mco4)/Rj

Type:

congenic

Source:

Institut National de la Sante et de la Recherche Medicale, Toulouse, France

Origin:

This congenic strain was derived from female LEW rats and male BN rats obtained from the Janvier breeding center, Le Genest-Saint-Isle, France. F1 offsprings were crossed with LEW females to transfer the desired locus to LEW background.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	22,918,268 - 40,741,723	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	22,402,817 - 41,976,505	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	22,266,756 - 41,793,199	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	23,428,127 - 42,042,465	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "LEW.BN-(D10Rat43-D10Mco4)/Rj" (RS:0000505)

Rat Strains:

LEW.BN-(D10Rat43-D10Mco4)/Rj

Clinical Measurements:

Experimental Conditions:

Toxoplasma gondii cysts

Measurement Methods:

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

percentage of study population displaying Toxoplasma gondii brain cysts at a point in time

serum anti-toxoplasma antibody titer

References

References - curated

#	Reference Title	Reference Citation
1.	Studies of congenic lines in the Brown Norway rat model of Th2-mediated immunopathological disorders show that the aurothiopropanol sulfonate-induced immunological disorder (Aiid3) locus on chromosome 9 plays a major role compared to Aiid2 on chromosome 10.	Mas M, etal., J Immunol 2004 May 15;172(10):6354-61.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat43)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	22,918,268 - 22,918,421 (-)	MAPPER
Rnor_6.0	10	22,402,817 - 22,402,969	NCBI
Rnor_5.0	10	22,266,756 - 22,266,908	UniSTS
RGSC_v3.4	10	23,428,127 - 23,428,280	RGD
RGSC_v3.4	10	23,428,128 - 23,428,280	UniSTS
RGSC_v3.1	10	23,429,177 - 23,429,329	RGD
Celera	10	22,529,796 - 22,529,945	UniSTS
RH 3.4 Map	10	236.6	UniSTS
RH 3.4 Map	10	236.6	RGD
RH 2.0 Map	10	256.7	RGD
SHRSP x BN Map	10	27.2699	RGD
FHH x ACI Map	10	16.48	RGD
Cytogenetic Map	10		RGD

Flank 2 / 1 (D10Mco4)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	40,741,532 - 40,741,723 (+)	MAPPER
Rnor_6.0	10	41,976,315 - 41,976,505	NCBI
Rnor_5.0	10	41,793,009 - 41,793,199	UniSTS
RGSC_v3.4	10	42,042,274 - 42,042,465	RGD
RGSC_v3.4	10	42,042,275 - 42,042,465	UniSTS
RGSC_v3.1	10	42,055,897 - 42,056,088	RGD
Celera	10	40,047,538 - 40,047,728	UniSTS
Cytogenetic Map	10		RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_immunology	This congenic strain shows a mild increase in serum IgE levels in response to aurothiopropanol-sulfonate (Atps).	1300041

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.BN-(D10Rat43-D10Mco4)/Rj

Related Phenotype Data for Term "LEW.BN-(D10Rat43-D10Mco4)/Rj" (RS:0000505)