Strain Report - Rat Genome Database

Name: LH.LH-Chr 17 LN -( Fancc rgdv551196202-C -rs106387478 )/Aek
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: LH.LH-Chr 17^LN-(Fancc^{rgdv551196202-C}-rs106387478)/Aek

Symbol:

LH.LH-Chr 17^LN-(Fancc^{rgdv551196202-C}-rs106387478)/Aek

Strain:

LH.LH-Chr 17^LN-(Fancc^{rgdv551196202-C}-rs106387478)/Aek

Substrain:

Aek

RGD ID:

13207339

Citation ID:

RRID:RRRC_00824

Ontology ID:

RS:0004476

Also Known As:

LH.LH-Chr 17LN-(pter- rs106387478)/Aek ; LH.LH-Chr 17LN-(Fanccrgdv551196202-C-rs106387478)/Aek; LH.LH-Chr 17^[LN]-(Fancc^[rgdv551196202-C]-rs106387478)/Aek

Type:

congenic

Available Source:

Rat Resource & Research Center

Origination:

Rat Resource & Research Center

Description:

This congenic strain contains a fragment of chromosome 17 from the LH-Chr 17^LN/Aek from Fancc^{rgdv551196202-C} through rs106387478 transferred to the LH/MRrrcAek background.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	17	946,321 - 946,321	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	17	939,418 - 939,418	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	17	7,228,496 - 7,228,496	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Personal Communication with Dr. Anne Kwitek Laboratory from University of Iowa	Personal Communication with Dr. Anne Kwitek Laboratory from University of Iowa

Region

Position Markers

Flank 1 / 1 (Fancc^{rgdv551196202-C})

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	946,321 - 946,321 (-)	RGD
Rnor_5.0	17	939,418 - 939,418 (-)	RGD
RGSC_v3.4	17	7,228,496 - 7,228,496 (+)	RGD

Flank 2 / 1 (rs106387478)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,716,725 - 45,716,725	RGD
Rnor_6.0	17	47,839,901 - 47,839,901	RGD

Additional Information

External Database Links

Database	Acc Id	Source(s)
RRRC	RRRC:00824	RGD

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LH.LH-Chr 17LN-(Fanccrgdv551196202-C-rs106387478)/Aek

Strain: LH.LH-Chr 17^LN-(Fancc^{rgdv551196202-C}-rs106387478)/Aek