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Strain Registration

Strain: SS.LEW-(D5Wox3-D5Rat108)/Jr

Symbol: SS.LEW-(D5Wox3-D5Rat108)/Jr
Strain: SS.LEW-(D5Wox3-D5Rat108)
Substrain: Jr
RGD ID: 1299881
Citation ID: RRID:RGD_1299881
Ontology ID: RS:0000839
Also Known As: SS.LEW-(D5Wox3-D5Rat108)/Jr; SS.LEW (5)x6x6
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: SS.LEW-(D5Rat130-D5Rat108)/Jr was selectively backcrossed with the SS strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2594,858,972 - 128,034,027RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0597,921,932 - 133,313,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05101,964,092 - 137,108,002RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4599,080,786 - 134,872,385RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Two closely linked interactive blood pressure QTL on rat chromosome 5 defined using congenic Dahl rats. Garrett MR and Rapp JP, Physiol Genomics 2002 Feb 28;8(2):81-6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2594,858,972 - 94,859,095 (+)MAPPER
Rnor_6.0597,921,932 - 97,922,054NCBI
Rnor_5.05101,964,092 - 101,964,214UniSTS
RGSC_v3.4599,080,786 - 99,080,909RGD
RGSC_v3.4599,080,787 - 99,080,909UniSTS
RGSC_v3.1599,086,012 - 99,086,135RGD
Celera593,448,084 - 93,448,206UniSTS
RH 3.4 Map5748.6RGD
RH 3.4 Map5748.6UniSTS
RH 2.0 Map5601.1RGD
Cytogenetic Map5 RGD

Flank 2 / 1 (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Has slightly lower blood pressure than SS strain 619649
strain_other Congenic segment may retain one QTL allele of two closely linked interacting QTLs for low blood pressure as compared to parental SS strain 619649