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Strain Registration

Strain: SS.LEW-(D5Rat54-D5Rat108)/Jr

Symbol: SS.LEW-(D5Rat54-D5Rat108)/Jr
Strain: SS.LEW-(D5Rat54-D5Rat108)
Substrain: Jr
RGD ID: 1299876
Citation ID: RRID:RGD_1299876
Ontology ID: RS:0000835
Also Known As: SS.LEW (5)x6x11; S.LEW (5)x6x11;S.L(5)x6x11;SS.LEW-(D5Rat54-D5Rat108)/Jr; SS.LEW-(D5Rat54-D5Rat108)/Jr
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: SS.LEW-(D5Rat130-D5Rat108)/Jr was selectively backcrossed with the SS strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,182,440 - 128,034,027RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05124,957,483 - 133,313,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05128,816,449 - 137,108,002RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45126,386,030 - 134,872,385RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Two closely linked interactive blood pressure QTL on rat chromosome 5 defined using congenic Dahl rats. Garrett MR and Rapp JP, Physiol Genomics 2002 Feb 28;8(2):81-6.
2. Cross-Talk of Expression Quantitative Trait Loci Within 2 Interacting Blood Pressure Quantitative Trait Loci. Lee NH, etal., Hypertension. 2007 Oct 15;.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat54)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25120,182,440 - 120,182,703 (+)MAPPER
Rnor_6.05124,957,483 - 124,957,745NCBI
Rnor_5.05128,816,449 - 128,816,711UniSTS
RGSC_v3.45126,386,031 - 126,386,293UniSTS
RGSC_v3.45126,386,030 - 126,386,293RGD
RGSC_v3.15126,391,257 - 126,391,519RGD
Celera5118,948,380 - 118,948,644UniSTS
RH 3.4 Map5717.7RGD
RH 3.4 Map5717.7UniSTS
RH 2.0 Map5764.4RGD
FHH x ACI Map560.77RGD

Flank 2 / 1 (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Has significantly lower blood pressure than SS strain 619649
strain_other Congenic segment retains alleles for two closely linked interacting QTLs for low blood pressure 619649