Strain Report - Rat Genome Database

Name: SS.SR-( D7Uia1-D7Mco7 )/Jr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.SR-(D7Uia1-D7Mco7)/Jr

Symbol:

SS.SR-(D7Uia1-D7Mco7)/Jr

Strain:

SS.SR-(D7Uia1-D7Mco7)

Substrain:

RGD ID:

1299868

Citation ID:

RRID:RGD_1299868

Ontology ID:

RS:0000912

Previously known as:

11bx4; S.R(11Bx4); SS.SR-(D7Uia1-D7Mco7)/Jr

Type:

congenic

Source:

Medical College of Ohio, Toledo, Ohio, USA

Origin:

Congenic substrain derived by crossing the congenic strain SS.SR-Cyp11b1/Jr to SS/Jr to isolate which contains a smaller SR/Jr derived chromosome 7 segment

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	103,146,217 - 103,146,515	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	7	112,429,186 - 112,429,483	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	7	112,367,543 - 116,100,169	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	7	108,875,615 - 113,014,423	RGD_MAPPER_PIPELINE	RGSC3.4

Congenic Strains

SS.SR-(D7Mco19-D7Mco7)/Jr

SS.SR-(D7Rat131-D7Mco7)/Jr

SS.SR-(D7Rat67-D7Mco7)/Jr

SS.SR-(D7Uia1-D7Mco19)/Jr

SS.SR-(D7Uia1-D7Rat131)/Jr

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased heart weight (IAGP)

decreased systemic arterial systolic blood pressure (IAGP,IMP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

View expanded data table

Clinical Measurement

systolic blood pressure

body weight

heart wet weight

References

References - curated

#	Reference Title	Reference Citation
1.	High-resolution mapping of the blood pressure QTL on chromosome 7 using Dahl rat congenic strains.	Cicila GT, etal., Genomics 2001 Feb 15;72(1):51-60.
2.	Defining the blood pressure QTL on Chromosome 7 in Dahl rats by a 177-kb congenic segment containing Cyp11b1.	Garrett MR and Rapp JP, Mamm Genome 2003 Apr;14(4):268-73.
3.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Uia1)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	103,146,217 - 103,146,515 (+)	MAPPER
Rnor_6.0	7	112,429,186 - 112,429,483	NCBI
Rnor_5.0	7	112,367,543 - 112,367,840	UniSTS
RGSC_v3.4	7	108,875,615 - 108,875,913	RGD
RGSC_v3.4	7	108,875,616 - 108,875,913	UniSTS
RGSC_v3.1	7	108,909,845 - 108,910,143	RGD
Celera	7	99,574,664 - 99,574,961	UniSTS
Cytogenetic Map	7		RGD

Flank 2 / 1 (D7Mco7)

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	7	116,059,683 - 116,060,096	NCBI
Rnor_5.0	7	116,059,684 - 116,060,096	NCBI
Rnor_5.0	7	116,099,756 - 116,100,169	NCBI
RGSC_v3.4	7	112,979,257 - 112,979,667	UniSTS
RGSC_v3.4	7	112,979,256 - 112,979,667	RGD
RGSC_v3.4	7	113,014,011 - 113,014,423	RGD
RGSC_v3.1	7	113,048,241 - 113,048,653	RGD
Cytogenetic Map	7	q34	UniSTS

Strain QTL Data

Symbol	Name	Trait
Bp169	Blood pressure QTL 169	arterial blood pressure trait (VT:2000000)

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_other	lower end of this strain is defined by crossover which occurred between exon 2 and 7 of the Cyp11b1 gene	629613

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.SR-(D7Uia1-D7Mco7)/Jr

Mammalian Phenotype

Related Phenotype Data for Term "SS.SR-(D7Uia1-D7Mco7)/Jr" (RS:0000912)