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Strain: SS.SR-(D7Uia1-D7Mco7)/Jr

Symbol: SS.SR-(D7Uia1-D7Mco7)/Jr
Strain: SS.SR-(D7Uia1-D7Mco7)
Substrain: Jr
RGD ID: 1299868
Citation ID: RRID:RGD_1299868
Ontology ID: RS:0000912
Also Known As: 11bx4; S.R(11Bx4); SS.SR-(D7Uia1-D7Mco7)/Jr
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: Congenic substrain derived by crossing the congenic strain SS.SR-Cyp11b1/Jr to SS/Jr to isolate which contains a smaller SR/Jr derived chromosome 7 segment
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27103,146,217 - 103,146,515RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07112,429,186 - 112,429,483RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07112,367,543 - 116,100,169RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.47108,875,615 - 113,014,423RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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References

References - curated
# Reference Title Reference Citation
1. High-resolution mapping of the blood pressure QTL on chromosome 7 using Dahl rat congenic strains. Cicila GT, etal., Genomics 2001 Feb 15;72(1):51-60.
2. Defining the blood pressure QTL on Chromosome 7 in Dahl rats by a 177-kb congenic segment containing Cyp11b1. Garrett MR and Rapp JP, Mamm Genome 2003 Apr;14(4):268-73.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Uia1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27103,146,217 - 103,146,515 (+)MAPPER
Rnor_6.07112,429,186 - 112,429,483NCBI
Rnor_5.07112,367,543 - 112,367,840UniSTS
RGSC_v3.47108,875,615 - 108,875,913RGD
RGSC_v3.47108,875,616 - 108,875,913UniSTS
RGSC_v3.17108,909,845 - 108,910,143RGD
Celera799,574,664 - 99,574,961UniSTS
Cytogenetic Map7 RGD

Flank 2 / 1 (D7Mco7)
Rat AssemblyChrPosition (strand)Source
Rnor_5.07116,059,683 - 116,060,096NCBI
Rnor_5.07116,059,684 - 116,060,096NCBI
Rnor_5.07116,099,756 - 116,100,169NCBI
RGSC_v3.47112,979,257 - 112,979,667UniSTS
RGSC_v3.47112,979,256 - 112,979,667RGD
RGSC_v3.47113,014,011 - 113,014,423RGD
RGSC_v3.17113,048,241 - 113,048,653RGD
Cytogenetic Map7q34UniSTS
Strain QTL Data
Symbol Name Trait
Bp169 Blood pressure QTL 169 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other lower end of this strain is defined by crossover which occurred between exon 2 and 7 of the Cyp11b1 gene 629613