Strain Report - Rat Genome Database

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Strain: SD-Mmp12em2Soar

Symbol: SD-Mmp12em2Soar
Strain: SD-Mmp12em2
Substrain: Soar
RGD ID: 12910505
Citation ID: RRID:RGD_12910505
Ontology ID: RS:0004465
Alleles: Mmp12em2Soar
Also Known As: SD-Mmp12em2Soar; SD-Mmp12^[em2Soar]
Type: mutant
Available Source: Not Available
Description: TALEN mediated 607 bp deletion that includes exon 2 of the Mmp12 gene, resulting in a frameshift and premature stop codon
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.284,582,897 - 4,583,503RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.085,607,704 - 5,608,310RGD_MAPPER_PIPELINERnor6.0
Rnor_5.085,610,392 - 5,620,294RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.484,249,938 - 4,259,675RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. HIF-KDM3A-MMP12 regulatory circuit ensures trophoblast plasticity and placental adaptations to hypoxia. Chakraborty D, etal., Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7212-E7221. Epub 2016 Nov 2.

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Mmp12em2Soar-var1 chr8 4582897 4583503 TGCAATGCTTGTGTTTTGTCTAGTGGTACTTGTCAAGATTTTTTGACTATCAAGGGGACAGAATTCCAATGACAAAAACAAAAACCAATAGAAACCTCCTAGAAGAAAAACTCCAGGAAATGCAGCAGTTCTTTGGGCTAGAAGTAACTGGGCAACTGGACACCTCAACTCTGAAAATAATGCACACGTCTCGATGTGGAGTGCCTGATGTACAGCATCTTAGAGCAGTGCCCCAGAGGTCAAGATGGATGAAGCGGTATCTCACTTACAGGTAATGTCATTGGAGAACTCTTCTACTTGCCTATGAGTGTAGCCTCTAGAACCCTAGAACATTTAGCTACAACGAAATTCTAAATCCAAGAGTAGCCTCTGCAAATTGTTAATACAAATGTGTTCATTTTCTCCAGACTGGGTTGATGGCTCAGTGGAAAAAGCACTTGTCATACACTATAAGGGCCAGAGTTCAGACCACAAGAAGCCAGGCATGGCGGCTGCCTATAATCCCAGCACATGGGAGGAAGAGATGGGGATGCCTAGGGCAAGTTGGCTAGCCAGATTAGTAGAATTAGGGGTCTTTGGCTTTGGTTGAGAGAACTTTCCTCAATAA - deletion mRatBN7.2
Mmp12em2Soar-var1 chr8 5607704 5608310 TGCAATGCTTGTGTTTTGTCTAGTGGTACTTGTCAAGATTTTTTGACTATCAAGGGGACAGAATTCCAATGACAAAAACAAAAACCAATAGAAACCTCCTAGAAGAAAAACTCCAGGAAATGCAGCAGTTCTTTGGGCTAGAAGTAACTGGGCAACTGGACACCTCAACTCTGAAAATAATGCACACGTCTCGATGTGGAGTGCCTGATGTACAGCATCTTAGAGCAGTGCCCCAGAGGTCAAGATGGATGAAGCGGTATCTCACTTACAGGTAATGTCATTGGAGAACTCTTCTACTTGCCTATGAGTGTAGCCTCTAGAACCCTAGAACATTTAGCTACAACGAAATTCTAAATCCAAGAGTAGCCTCTGCAAATTGTTAATACAAATGTGTTCATTTTCTCCAGACTGGGTTGATGGCTCAGTGGAAAAAGCACTTGTCATACACTATAAGGGCCAGAGTTCAGACCACAAGAAGCCAGGCATGGCGGCTGCCTATAATCCCAGCACATGGGAGGAAGAGATGGGGATGCCTAGGGCAAGTTGGCTAGCCAGATTAGTAGAATTAGGGGTCTTTGGCTTTGGTTGAGAGAACTTTCCTCAATAA - deletion Rnor_6.0

Additional Information