Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.BN-(D13Rat25-rs198199323)/Mcwi

Symbol: SS.BN-(D13Rat25-rs198199323)/Mcwi
Strain: SS.BN-(D13Rat25-rs198199323)
Substrain: Mcwi
RGD ID: 12802364
RRID: RGD_12802364
Ontology ID: RS:0004402
Also known as: Line 9F; SS.BN13 congenic 9F; SS.BN-(D13Rat25-rs198199323)/Mcwi
Type: congenic
Source: Medical College of Wisconsin, Milwaukee, Wisconsin
Origin: SS/JrHsdMcwi were crossed with SS-13BN(D13Rat123-D13Rat101)/Mcwi (RGD:2293145), rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,049,404 - 45,049,579RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01350,260,357 - 50,918,009RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,314,020 - 55,971,123RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,520,126 - 47,031,810RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
1. Hoffman MJ, etal., Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.


Position Markers

Flank 1 / null (D13Rat25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,049,404 - 45,049,579 (-)MAPPER
Rnor_6.01350,260,357 - 50,260,531NCBI
Rnor_5.01355,314,020 - 55,314,194UniSTS
RGSC_v3.41346,520,765 - 46,520,939UniSTS
RGSC_v3.41346,520,127 - 46,520,301UniSTS
RGSC_v3.41346,520,764 - 46,520,939RGD
RGSC_v3.41346,520,126 - 46,520,301RGD
RGSC_v3.11346,534,808 - 46,534,982RGD
Celera1345,381,673 - 45,381,847UniSTS
RH 3.4 Map13174.3RGD
RH 3.4 Map13174.3UniSTS
RH 2.0 Map13375.1RGD
SHRSP x BN Map1314.7498RGD
FHH x ACI Map1318.23RGD
Cytogenetic Map13q13UniSTS

Flank 2 / null (rs106935835)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01350,918,009 - 50,918,009RGD
Rnor_5.01355,971,123 - 55,971,123RGD
RGSC_v3.41347,031,810 - 47,031,810RGD
Strain QTL Data
Symbol Name Trait
Bp397 Blood pressure QTL 397 arterial blood pressure trait   (VT:2000000)    

Additional Information