Strain Report - Rat Genome Database

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Strain: SS.BN-(D13Rat77-D13Got22)/Mcwi

Symbol: SS.BN-(D13Rat77-D13Got22)/Mcwi
Strain: SS.BN-(D13Rat77-D13Got22)
Substrain: Mcwi
RGD ID: 12798534
Citation ID: RRID:RGD_12798534
Ontology ID: RS:0004392
Also Known As: Line 5-7; SS.BN-(D13Rat77-D13Got22)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS.BN-(D13Rat111-D13Got22)/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21360,933,298 - 60,933,518RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.2593,541,170 - 93,542,503RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01349,720,575 - 66,075,827RGD_MAPPER_PIPELINERnor6.0
Rnor_6.0596,601,805 - 96,603,137RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01354,791,498 - 71,047,437RGD_MAPPER_PIPELINERnor5.0
Rnor_5.05100,631,702 - 100,633,034RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41345,828,608 - 63,175,600RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.4597,701,780 - 97,703,112RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
proteinuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Narrowing a region on rat chromosome 13 that protects against hypertension in Dahl SS-13BN congenic strains. Moreno C, etal., Am J Physiol Heart Circ Physiol. 2011 Apr;300(4):H1530-5. doi: 10.1152/ajpheart.01026.2010. Epub 2011 Jan 21.

Region

Position Markers

Flank 1 / 1 (D13Rat77)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21360,933,298 - 60,933,518 (+)MAPPER
Rnor_6.01366,075,608 - 66,075,827NCBI
Rnor_5.01371,047,218 - 71,047,437UniSTS
RGSC_v3.41363,175,274 - 63,175,600RGD
RGSC_v3.41363,175,311 - 63,175,530UniSTS
RGSC_v3.11363,189,391 - 63,189,610RGD
Celera1360,931,410 - 60,931,629UniSTS
RH 3.4 Map13282.8UniSTS
RH 3.4 Map13282.8RGD
RH 2.0 Map13421.2RGD
SHRSP x BN Map1322.6498RGD
FHH x ACI Map1322.65RGD

Flank 2 / 1 (D13Got22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2593,541,170 - 93,542,503 (+)MAPPER
Rnor_6.01349,720,575 - 49,720,682NCBI
Rnor_6.0596,601,805 - 96,603,137NCBI
Rnor_5.05100,631,702 - 100,633,034UniSTS
Rnor_5.01354,791,498 - 54,791,605UniSTS
RGSC_v3.4597,701,780 - 97,703,112UniSTS
RGSC_v3.41345,828,608 - 45,828,716RGD
RGSC_v3.41345,828,609 - 45,828,716UniSTS
RGSC_v3.11345,842,652 - 45,842,759RGD
Celera1344,707,006 - 44,707,111UniSTS
Celera592,175,218 - 92,176,550UniSTS
RH 3.4 Map13114.1RGD
RH 3.4 Map13114.1UniSTS
RH 2.0 Map13398.3RGD
Cytogenetic Map13q13UniSTS

Additional Information