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Strain Registration

Strain: DA.E3-(RT1-DMa-Ggnbp1)

Symbol: DA.E3-(RT1-DMa-Ggnbp1)
Strain: DA.E3-(RT1-DMa-Ggnbp1)
RGD ID: 12743640
Citation ID: RRID:RRRC_00715
Ontology ID: RS:0004329
Previously known as: DA.1IR85; DA.E3-(RT1-DMa-Ggnbp1)
Type: congenic
Source: Rat Resource and Research Center
Origin: The Tcs1 QTL in DA.E3-(RT1-DMa-Ggnbp1)(DA.1IR85) contains a ~0.5 Mb (min- max 0.43 - 0.63 Mb) insert from DA.1I (RGD:10002743, DA.E3-(D20Rat42-D20Rat49)/Rhd). The inserted fragment spans the MHC-I region but excludes most of the MHC-II region, inclduing the RT1-B and RT1-D genes.
Last Known Status: Cryopreserved Sperm (as of 2017-02-13)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,707,028 - 5,116,185RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0203,935,512 - 5,625,320RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0207,302,036 - 7,690,734RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4204,843,458 - 5,271,653RGD_MAPPER_PIPELINERGSC3.4






References

Region

Position Markers

Flank 1 / 1 (Ggnbp1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2205,109,849 - 5,116,185 (+)NCBI
mRatBN7.2 Ensembl205,099,311 - 5,116,183 (+)Ensembl
UTH_Rnor_SHR_Utx205,835,571 - 5,841,871 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0205,197,314 - 5,203,615 (+)NCBI
UTH_Rnor_WKY_Bbb_1.0205,675,460 - 5,681,755 (+)NCBI
Rnor_6.0205,618,973 - 5,625,320 (+)NCBI
Rnor_6.0 Ensembl205,619,012 - 5,625,320 (+)Ensembl
Rnor_5.0207,684,411 - 7,690,734 (+)NCBI
RGSC_v3.4205,265,353 - 5,271,653 (+)NCBI
RGSC_v3.1205,265,579 - 5,271,875 (+)NCBI
Celera206,690,509 - 6,696,809 (+)NCBI
Cytogenetic Map20p12NCBI

Flank 1 / 1 (RT1-DMa)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,707,028 - 4,710,432 (-)NCBI
mRatBN7.2 Ensembl204,707,028 - 4,710,432 (-)Ensembl
UTH_Rnor_SHR_Utx205,459,571 - 5,462,978 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0204,821,312 - 4,824,719 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0205,302,578 - 5,305,996 (-)NCBI
Rnor_6.0203,935,512 - 3,938,915 (+)NCBI
Rnor_6.0 Ensembl205,240,975 - 5,244,386 (-)Ensembl
Rnor_5.0207,302,036 - 7,305,439 (-)NCBI
RGSC_v3.4204,843,458 - 4,846,861 (-)NCBI
RGSC_v3.1204,843,691 - 4,847,054 (-)NCBI
Celera206,307,688 - 6,311,091 (-)NCBI
Cytogenetic Map20p12NCBI
Strain QTL Data
Symbol Name Trait
Tcs1 T cell selection QTL 1

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-16 DA.E3-(RT1-DMa-Ggnbp1)    DA.E3-(Ggnbp1-RT1-DMa-Ggnbp1)    Symbol updated 68687 APPROVED
2018-02-16 DA.E3-(RT1-DMa-Ggnbp1)    DA.E3-(Ggnbp1-RT1-DMa-Ggnbp1)    Symbol updated 68687 APPROVED
2018-02-16 DA.E3-(Ggnbp1-RT1-DMa-Ggnbp1)    DA.E3-(Ggnbp1-RT1-DMa)    Symbol updated 68687 APPROVED
2018-02-16 DA.E3-(Ggnbp1-RT1-DMa-Ggnbp1)    DA.E3-(Ggnbp1-RT1-DMa)    Symbol updated 68687 APPROVED
2017-02-13 DA.E3-(Ggnbp1-RT1-DMa)    DA.E3-(Brd2-Cuta)    Symbol updated 68687 APPROVED
2017-02-13 DA.E3-(Ggnbp1-RT1-DMa)    DA.E3-(Brd2-Cuta)    Symbol updated 68687 APPROVED
2017-02-13 DA.E3-(Brd2-Cuta)    DA.E3-(Ggnbp1- RT1-DMa)    Symbol updated 68687 APPROVED
2017-02-13 DA.E3-(Brd2-Cuta)    DA.E3-(Ggnbp1- RT1-DMa)    Symbol updated 68687 APPROVED

Database Acc Id Source(s)
RRRC RRRC:00715 RGD