Strain Report - Rat Genome Database

Name: BDIX.BDIV- D10Got1-D10Rat45 /Zte
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BDIX.BDIV-D10Got1-D10Rat45/Zte

Symbol:

BDIX.BDIV-D10Got1-D10Rat45/Zte

Strain:

BDIX.BDIV-D10Got1-D10Rat45

Substrain:

Zte

RGD ID:

11554329

Citation ID:

RRID:RGD_11554329

Ontology ID:

RS:0004258

Previously known as:

BDIX.BDIV-Mss7; BDIX.BDIV-D10Got1-D10Rat45/Zte

Type:

congenic

Source:

Institute of Cell Biology (Cancer Research) of Duisburg-Essen University Medical School, Essen, Germany

Origin:

The BDIX.BDIV-D10Got1-D10Rat45/Zte congenic strain was produced by crossing BDIX (tumor-susceptible) and BDIV (tumor resistant) and then selecting for strains carrying homozygous segments of the BDIV chromosome on a BDIX background.

Last Known Status:

Live Animals (as of 2016-10-26)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,765,527 - 19,816,042	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	4,835,638 - 20,170,031	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	3,662,335 - 20,046,466	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	4,697,541 - 20,233,281	RGD_MAPPER_PIPELINE	RGSC3.4

Congenic Strains

BDIX.BDIV-D10Got1-D10Rat45/ZteRrrc

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neurilemmoma (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased incidence of tumors by chemical induction (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

View expanded data table

Clinical Measurement

post-insult time of death

percentage of study population displaying trigeminal nerve neurilemmomas at a point in time

References

References - curated

#	Reference Title	Reference Citation
1.	Chemically Induced Oncogenesis in the Peripheral Nervous System Is Suppressed in Congenic BDIX.BDIV-Mss1 and -Mss7 Rats.	Koelsch B, etal., G3 (Bethesda). 2015 Nov 3;6(1):59-65. doi: 10.1534/g3.115.021170.
2.	Gender-specific polygenic control of ethylnitrosourea-induced oncogenesis in the rat peripheral nervous system.	Koelsch BU, etal., Int J Cancer. 2006 Jan 1;118(1):108-14.

Region

Position Markers

Flank 1 / 1 (D10Got1)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	4,765,527 - 4,765,634 (+)	MAPPER
Rnor_6.0	10	4,835,638 - 4,835,744	NCBI
Rnor_5.0	10	3,662,335 - 3,662,441	UniSTS
RGSC_v3.4	10	4,697,541 - 4,697,648	RGD
RGSC_v3.4	10	4,697,542 - 4,697,648	UniSTS
RGSC_v3.1	10	4,697,541 - 4,697,648	RGD
Celera	10	3,787,157 - 3,787,263	UniSTS
RH 2.0 Map	10	0.0	RGD
Cytogenetic Map	10	q11	UniSTS

Flank 2 / 1 (D10Rat45)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	19,815,919 - 19,816,042 (+)	MAPPER
Rnor_6.0	10	20,169,909 - 20,170,031	NCBI
Rnor_5.0	10	20,046,344 - 20,046,466	UniSTS
RGSC_v3.4	10	20,233,007 - 20,233,129	UniSTS
RGSC_v3.4	10	20,233,004 - 20,233,281	RGD
RGSC_v3.1	10	20,234,056 - 20,234,178	RGD
Celera	10	19,443,769 - 19,443,891	UniSTS
RH 3.4 Map	10	214.43	RGD
RH 3.4 Map	10	214.43	UniSTS
RH 2.0 Map	10	220.8	RGD
SHRSP x BN Map	10	21.6	RGD
FHH x ACI Map	10	14.0	RGD
Cytogenetic Map	10	q12	UniSTS

Strain QTL Data

Symbol	Name	Trait
Schws7	Schwannoma susceptibility QTL 7	nervous system integrity trait (VT:0010566)

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BDIX.BDIV-D10Got1-D10Rat45/Zte

Mammalian Phenotype

Related Phenotype Data for Term "BDIX.BDIV-D10Got1-D10Rat45/Zte" (RS:0004258)