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Strain Registration

Strain: SHR.BN-(D16Rat88-D16Rat9)/Cub

Symbol: SHR.BN-(D16Rat88-D16Rat9)/Cub
Strain: SHR.BN-(D16Rat88-D16Rat9)
Substrain: Cub
RGD ID: 11040455
Citation ID: RRID:RGD_11040455
Ontology ID: RS:0004097
Also Known As: SHR.BN-(D16Rat88-D16Rat9)/Cub
Type: congenic
Available Source: Not Available
Origination: Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University in Prague, Prague, Czech Republic
Description: Segment of chromosome 16 from BN.Lx/Cub was transferred to SHR/Ola after 9 backcrosses an intercross was done to obtain the desired congenic
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr816839,086 - 25,639,168RGD_MAPPER_PIPELINE
mRatBN7.216832,236 - 20,872,425RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0161,550,187 - 22,579,213RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0161,534,408 - 22,473,610RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.416819,225 - 22,577,050RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by Dr. Ondrej Seda's group Personal communication between Dr. Ondrej Seda
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D16Rat88)
Rat AssemblyChrPosition (strand)Source
GRCr816839,086 - 839,230 (+)Marker Load Pipeline
mRatBN7.216832,236 - 832,380 (+)MAPPER
Rnor_6.0161,550,187 - 1,550,330NCBI
Rnor_5.0161,534,408 - 1,534,551UniSTS
RGSC_v3.416819,225 - 819,369RGD
RGSC_v3.416819,226 - 819,369UniSTS
RGSC_v3.116819,226 - 819,369RGD
Celera16812,123 - 812,266UniSTS
RH 3.4 Map18655.3RGD
RH 3.4 Map18655.3UniSTS
RH 2.0 Map18257.7RGD
SHRSP x BN Map161.1999RGD

Flank 2 / 1 (D16Rat9)
Rat AssemblyChrPosition (strand)Source
GRCr81625,638,986 - 25,639,168 (+)Marker Load Pipeline
mRatBN7.21620,872,243 - 20,872,425 (+)MAPPER
Rnor_6.01622,579,032 - 22,579,213NCBI
Rnor_5.01622,473,429 - 22,473,610UniSTS
RGSC_v3.41622,576,868 - 22,577,050RGD
RGSC_v3.41622,576,869 - 22,577,050UniSTS
RGSC_v3.11622,576,866 - 22,577,048RGD
Celera1621,030,671 - 21,030,828UniSTS
RH 2.0 Map16268.7RGD
SHRSP x BN Map167.88RGD
FHH x ACI Map1612.1799RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-23 SHR.BN-(D16Rat88-D16Rat9)/Cub    SHR.BN-(D16Rat88-D16Rat9)/Cub    Name updated 68913 APPROVED
2016-03-23 SHR.BN-(D16Rat88-D16Rat9)/Cub    SHR.BN-(D16Rat88-D16Rat9)/Cub    Name updated 68913 APPROVED