Strain Report - Rat Genome Database

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Strain: SHR.BN-(D16Rat88-D16Rat9)/Cub

Symbol: SHR.BN-(D16Rat88-D16Rat9)/Cub
Strain: SHR.BN-(D16Rat88-D16Rat9)
Substrain: Cub
RGD ID: 11040455
Citation ID: RRID:RGD_11040455
Ontology ID: RS:0004097
Previously known as: SHR.BN-(D16Rat88-D16Rat9)/Cub
Type: congenic
Source: Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University in Prague, Prague, Czech Republic
Origin: Segment of chromosome 16 from BN.Lx/Cub was transferred to SHR/Ola after 9 backcrosses an intercross was done to obtain the desired congenic
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.216832,236 - 20,872,425RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0161,550,187 - 22,579,213RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0161,534,408 - 22,473,610RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.416819,225 - 22,577,050RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. Strains registered by Dr. Ondrej Seda's group Personal communication between Dr. Ondrej Seda
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D16Rat88)
Rat AssemblyChrPosition (strand)Source
mRatBN7.216832,236 - 832,380 (+)MAPPER
Rnor_6.0161,550,187 - 1,550,330NCBI
Rnor_5.0161,534,408 - 1,534,551UniSTS
RGSC_v3.416819,226 - 819,369UniSTS
RGSC_v3.416819,225 - 819,369RGD
RGSC_v3.116819,226 - 819,369RGD
Celera16812,123 - 812,266UniSTS
RH 3.4 Map18655.3RGD
RH 3.4 Map18655.3UniSTS
RH 2.0 Map18257.7RGD
SHRSP x BN Map161.1999RGD

Flank 2 / 1 (D16Rat9)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21620,872,243 - 20,872,425 (+)MAPPER
Rnor_6.01622,579,032 - 22,579,213NCBI
Rnor_5.01622,473,429 - 22,473,610UniSTS
RGSC_v3.41622,576,868 - 22,577,050RGD
RGSC_v3.41622,576,869 - 22,577,050UniSTS
RGSC_v3.11622,576,866 - 22,577,048RGD
Celera1621,030,671 - 21,030,828UniSTS
RH 2.0 Map16268.7RGD
SHRSP x BN Map167.88RGD
FHH x ACI Map1612.1799RGD

Additional Information

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-23 SHR.BN-(D16Rat88-D16Rat9)/Cub    SHR.BN-(D16Rat88-D16Rat9)/Cub    Name updated 68913 APPROVED
2016-03-23 SHR.BN-(D16Rat88-D16Rat9)/Cub    SHR.BN-(D16Rat88-D16Rat9)/Cub    Name updated 68913 APPROVED