Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: WKY.F344-(D17Got91-D17Rat47)/Tja

Symbol: WKY.F344-(D17Got91-D17Rat47)/Tja
Strain: WKY.F344-(D17Got91-D17Rat47)
Substrain: Tja
RGD ID: 10401837
Citation ID: RRID:RGD_10401837
Ontology ID: RS:0004046
Also Known As: WKY.F344-(D17Got91-D17Rat47)/Tja; R47A Sub-A
Type: congenic
Available Source: Not Available
Origination: MRC Clinical Centre, London, UK
Description: A congenic substrain derived from the progenitor strain WKY.F344-(D17Got91-D17Rat51)/Tja
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21771,003,329 - 73,951,021RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01774,852,634 - 77,922,655RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01776,512,697 - 79,573,336RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41782,277,434 - 85,072,478RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View


References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. The zinc transporter ZIP12 regulates the pulmonary vascular response to chronic hypoxia. Zhao L, etal., Nature. 2015 Aug 20;524(7565):356-60. doi: 10.1038/nature14620. Epub 2015 Aug 10.

Region

Position Markers

Flank 1 / 1 (D17Got91)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21771,003,329 - 71,003,506 (+)MAPPER
Rnor_6.01774,852,634 - 74,852,810NCBI
Rnor_5.01776,512,697 - 76,512,873UniSTS
RGSC_v3.41782,277,434 - 82,277,611RGD
RGSC_v3.41782,277,435 - 82,277,611UniSTS
RGSC_v3.11782,288,268 - 82,288,444RGD
Celera1770,465,173 - 70,465,349UniSTS
RH 3.4 Map17704.6UniSTS
RH 3.4 Map17704.6RGD
RH 2.0 Map17608.8RGD

Flank 2 / 1 (D17Rat47)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21773,950,895 - 73,951,021 (+)MAPPER
mRatBN7.21773,950,871 - 73,951,021 (+)MAPPER
Rnor_6.01777,922,530 - 77,922,655NCBI
Rnor_6.01777,922,462 - 77,922,655NCBI
Rnor_5.01779,573,143 - 79,573,336UniSTS
Rnor_5.01779,573,211 - 79,573,336UniSTS
RGSC_v3.41785,072,352 - 85,072,475RGD
RGSC_v3.41785,072,353 - 85,072,478UniSTS
RGSC_v3.11785,083,185 - 85,083,308RGD
RH 3.4 Map17743.7RGD
RH 3.4 Map17743.7UniSTS
RH 2.0 Map17638.4RGD
SHRSP x BN Map1743.3399RGD
FHH x ACI Map1758.72RGD
Cytogenetic Map17 RGD

Additional Information