Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SD-Vcpem1Ionsz

Symbol: SD-Vcpem1Ionsz
Strain: SD-Vcpem1
Substrain: Ionsz
RGD ID: 10054276
Citation ID: RRID:RGD_10054276
Ontology ID: RS:0003958
Alleles: Vcpem1Ionsz
Also Known As: SD-Vcpem1Ionsz; SD-Vcp em1(R155H)Ionsz; SD-Vcp^[em1Ionsz]
Type: mutant
Available Source: Not Available
Origination: Institute of Neuroscience, Chinese Academy of Sciences
Description: CRISPR/Cas9 system was used to generate this mutant; sgRNA+Cas9+Oligo was injected into zygote of SD rat that made the 155th amino acid Arg into His
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8562,005,984 - 62,025,387RGD_MAPPER_PIPELINE
mRatBN7.2557,210,167 - 57,229,571RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0558,426,548 - 58,445,953RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0562,951,999 - 62,971,402RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4559,472,100 - 59,491,508RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Qiang Sun's group Personal communication between Dr. Qiang Sun's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 SD-Vcpem1Ionsz    SD-Vcpem1Ionsz    Symbol updated 68687 APPROVED
2016-03-16 SD-Vcpem1Ionsz    SD-Vcpem1Ionsz    Name updated 68913 APPROVED
2016-03-16 SD-Vcpem1Ionsz    SD-Vcpem1Ionsz    Symbol updated 68687 APPROVED
2016-03-16 SD-Vcpem1Ionsz    SD-Vcpem1Ionsz    Name updated 68913 APPROVED