Strain Report - Rat Genome Database

Name: SS.SR-( D13Arb5-D13Arb8 )/Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.SR-(D13Arb5-D13Arb8)/Mcwi

Symbol:

SS.SR-(D13Arb5-D13Arb8)/Mcwi

Strain:

SS.SR-(D13Arb5-D13Arb8)

Substrain:

Mcwi

RGD ID:

10046035

RRID:

RGD_10046035

Ontology ID:

RS:0003942

Also known as:

SS.SR-(D13N1-Syt2)/Mcwi; RGRR ; SS.SR-(D13Arb5-D13Arb8)/Mcwi; S/renRR congenic; SS.SR-(D13Arb5-D13Arb8)/Mcwi

Type:

congenic

Source:

Department of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin

Origin:

A region of chromosome 13 containing the renin gene from the Dahl salt-resistant (Dahl R; SR/JrHsd) strain into the SS genetic background (SS/JrHsdMcwi)

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	37,902,608 - 46,193,066	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	13	42,794,724 - 51,577,031	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	13	47,898,759 - 56,629,737	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	13	38,985,717 - 47,698,301	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated


1.	Drenjancevic-Peric I, etal., Am J Hypertens. 2010 Mar;23(3):243-8. doi: 10.1038/ajh.2009.236. Epub 2009 Dec 3.
2.	Drenjancevic-Peric I, etal., Microcirculation. 2004 Dec;11(8):669-77.
3.	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Arb5)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	37,902,608 - 37,902,821 (-)	MAPPER
mRatBN7.2	13	37,902,608 - 37,902,821 (+)	MAPPER
Rnor_6.0	13	43,785,727 - 43,785,939	NCBI
Rnor_6.0	13	42,794,724 - 42,794,936	NCBI
Rnor_5.0	13	48,881,057 - 48,881,269	UniSTS
Rnor_5.0	13	47,898,759 - 47,898,971	UniSTS
RGSC_v3.4	13	38,985,717 - 38,985,930	RGD
RGSC_v3.4	13	38,985,718 - 38,985,930	UniSTS
RGSC_v3.1	13	38,999,761 - 38,999,973	RGD
Celera	13	37,690,125 - 37,690,337	UniSTS
RH 3.4 Map	13	75.6	UniSTS
RH 3.4 Map	13	75.6	RGD
SHRSP x BN Map	13	7.9399	RGD
SHRSP x BN Map	13	7.9399	UniSTS
FHH x ACI Map	13	8.9999	RGD
Cytogenetic Map	13	q11	UniSTS

Flank 2 / 1 (D13Arb8)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	46,192,872 - 46,193,066 (+)	MAPPER
Rnor_6.0	13	51,576,838 - 51,577,031	NCBI
Rnor_5.0	13	56,629,544 - 56,629,737	UniSTS
RGSC_v3.4	13	47,698,108 - 47,698,301	UniSTS
Celera	13	46,519,637 - 46,519,830	UniSTS
RH 3.4 Map	13	172.5	UniSTS
SHRSP x BN Map	13	14.7798	UniSTS
SHRSP x BN Map	13	14.7798	RGD
Cytogenetic Map	13	q13	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2015-07-02	SS.SR¿(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR¿(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR-(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Symbol updated	68687	APPROVED
2015-07-02	SS.SR-(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR-(D13Arb5-D13Arb8)/Mcwi	SS.SR-(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR-(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR-(D13Arb5-D13Arb8)/Mcwi	SS.SR-(D13N1-Syt2)/Mcwi	Symbol updated	68687	APPROVED
2015-07-02	SS.SR-(D13Arb5-D13Arb8)/Mcwi	SS.SR-(D13N1-Syt2)/Mcwi	Name updated	68913	APPROVED
2015-07-02	SS.SR-(D13Arb5-D13Arb8)/Mcwi	SS.SR-(D13N1-Syt2)/Mcwi	Symbol updated	68687	APPROVED
2015-07-02	SS.SR-(D13N1-Syt2)/Mcwi	SS.SR¿(D13N1-Syt2)/Mcwi	Symbol updated	68687	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.SR-(D13Arb5-D13Arb8)/Mcwi