Strain Report - Rat Genome Database

Name: BBDP.ACI-( D2Mit8-D2Arb16 )/Sunn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BBDP.ACI-(D2Mit8-D2Arb16)/Sunn

Symbol:

BBDP.ACI-(D2Mit8-D2Arb16)/Sunn

Strain:

BBDP.ACI-(D2Mit8-D2Arb16)

Substrain:

Sunn

RGD ID:

10043124

Citation ID:

RRID:RGD_10043124

Ontology ID:

RS:0003900

Previously known as:

BBDP.ACI-(D2Mit8-D2Arb16)/Sunn; 2BAb

Type:

congenic

Source:

Sunnybrook Research Institute, Toronto, Ontario, Canada

Origin:

104 Mb region from ACI.BBDP-(RT1^u),(Gimap5)/Sunn is introgressed into the BBDP/WorSunn background which carries the centromeric region of Iddm26 and a small fragment of Iddm32

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	143,657,411 - 190,602,963	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	2	149,614,466 - 205,573,168	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	2	169,047,256 - 225,003,755	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	2	148,790,600 - 198,312,656	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

type 1 diabetes mellitus (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased IgE level (IAGP)

decreased macrophage cell number (IAGP)

decreased susceptibility to autoimmune diabetes (IAGP)

thymus hyperplasia (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Genetic dissection of Iddm26 in the spontaneously diabetic BBDP rat.	Sarmiento J, etal., Genes Immun. 2014 Sep;15(6):378-91. doi: 10.1038/gene.2014.29. Epub 2014 Jun 12.

Region

Position Markers

Flank 1 / 1 (D2Mit8)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	143,657,411 - 143,657,569 (+)	MAPPER
Rnor_6.0	2	149,614,466 - 149,614,623	NCBI
Rnor_5.0	2	169,047,256 - 169,047,413	UniSTS
RGSC_v3.4	2	148,790,600 - 148,790,758	RGD
RGSC_v3.4	2	148,790,601 - 148,790,758	UniSTS
RGSC_v3.1	2	148,740,564 - 148,740,721	RGD
Celera	2	138,082,182 - 138,082,339	UniSTS
RH 3.4 Map	2	880.5	UniSTS
RH 3.4 Map	2	880.5	RGD
RH 2.0 Map	2	720.9	RGD
SHRSP x BN Map	2	58.2598	RGD
Cytogenetic Map	2		RGD

Flank 2 / 1 (D2Arb16)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	190,602,746 - 190,602,963 (+)	MAPPER
Rnor_6.0	2	205,572,952 - 205,573,168	NCBI
Rnor_5.0	2	225,003,539 - 225,003,755	UniSTS
RGSC_v3.4	2	198,312,439 - 198,312,656	RGD
RGSC_v3.4	2	198,312,440 - 198,312,656	UniSTS
RGSC_v3.1	2	198,275,193 - 198,275,410	RGD
Celera	2	183,076,093 - 183,076,309	UniSTS
SHRSP x BN Map	2	72.7698	UniSTS
SHRSP x BN Map	2	72.7698	RGD
Cytogenetic Map	2	q34	UniSTS

Strain QTL Data

Symbol	Name	Trait
Iddm54	Insulin dependent diabetes mellitus QTL 54	blood glucose amount (VT:0000188)

Additional Information

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-05-14	BBDP.ACI-(D2Mit8-D2Arb16)/Sunn		BBDP.ACI-(D2Mit8-D2Arb16)/Sunn		Name updated	68913	APPROVED
2015-05-14	BBDP.ACI-(D2Mit8-D2Arb16)/Sunn		BBDP.ACI-(D2Mit8-D2Arb16)/Sunn		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BBDP.ACI-(D2Mit8-D2Arb16)/Sunn

Mammalian Phenotype