rs6127742 Rat Genome Database

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Variant: rs6127742 -  Homo sapiens

RGD ID: 155846368
RS ID: rs6127742
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: BPI  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 20 38,322,148
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs6127742Humanneutrophil phagocytosis trait  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:34648354

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs6127742Humanbactericidal permeability-increasing protein measurement  IAGP 405850206 GWAS_CATALOGPMID:34648354
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS600272_H GCST90246731 Bactericidal permeability-increasing protein levels 10,708 European ancestry individuals A 0.1 5E-231 230.302 rs6127742 0.686 bactericidal permeability-increasing protein measurement (EFO:0020172)
 PMID:34648354
GWAS939867_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.149404 5E-28 27.302 rs6127742 0.415376 bactericidal permeability-increasing protein measurement (EFO:0020172)
 PMID:36168886

Variant Details
Variant Transcripts
Gene Symbol:BPI
Accession:XM_024451972
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440394
Location:INTRON

Gene Symbol:BPI
Accession:NM_001725
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440393
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440395
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90161970 GWAS Catalog