rs10940988 Rat Genome Database

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Variant: rs10940988 -  Homo sapiens

RGD ID: 406319357
RS ID: rs10940988
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PDZD2  
Reference Nucleotide: G
Variant Nucleotide: ?
Position
Assembly Chr Position
GRCh38 5 31,971,963
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs10940988Humansuberic acid measurement  IAGP 405850206 GWAS_CATALOGPMID:23823483
GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698533_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000001 6 rs10940988 0.8979875 suberic acid measurement (EFO:0010534)
 PMID:23823483

Variant Details
Variant Transcripts
Gene Symbol:PDZD2
Accession:XM_006714460
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_005248269
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_011513994
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_011513992
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_047416965
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_011513996
Location:INTRON

Gene Symbol:PDZD2
Accession:NM_178140
Location:INTRON

Gene Symbol:PDZD2
Accession:XM_011513993
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog