rs10100475 Rat Genome Database

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Variant: rs10100475 -  Homo sapiens

RGD ID: 406334335
RS ID: rs10100475
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PSD3  
Reference Nucleotide: T
Variant Nucleotide: ?
Position
Assembly Chr Position
GRCh38 8 18,785,247
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs10100475Humansuberic acid measurement  IAGP 405850206 GWAS_CATALOGPMID:23823483
GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698536_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000004 5.398 rs10100475 0.45262715 suberic acid measurement (EFO:0010534)
 PMID:23823483

Variant Details
Variant Transcripts
Gene Symbol:PSD3
Accession:NM_001412865
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412882
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412868
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412872
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412885
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412890
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412879
Location:INTRON

Gene Symbol:PSD3
Accession:NM_206909
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412889
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412887
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412869
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001362819
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412895
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412893
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412867
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412892
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412894
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412896
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412880
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412883
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412886
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412876
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412888
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412873
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412874
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412875
Location:INTRON

Gene Symbol:PSD3
Accession:NM_015310
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412877
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412884
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412866
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412881
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412871
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412870
Location:INTRON

Gene Symbol:PSD3
Accession:NM_001412891
Location:INTRON

Gene Symbol:PSD3
Accession:NR_182062
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog