Zbtb16Lx-var1Rat Genome Database

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Variant: Zbtb16Lx-var1 -  Rattus norvegicus

Name: Zbtb16Lx-var1
RGD ID: 14392787
Description: Variant associated with allele Zbtb16Lx
Type: deletion (SO:0000159)
Associated Allele:  Zbtb16Lx
Reference Nucleotide: CCTGGGCCAGTGAGCACCTGCACTGGGCTATGTGTCTGTTGTTTGCTCCATGATCCCACTGACCAGATACCACCATGCCAAGAGGCACGCTCCTAATTTCCTCCTGCTGACCCAGATGCATCTGGCTGGGAACCCTGCCCTGTCCACACAGCTTCTACAAGAGCCCATCTTTGTTTCCAGACACCATGTTCTCTCCACTCACCACTCACTATGCAGCCAACCATTGTAGGAAATCTAGGGGGAAAAGGACGGAACAGGGAGAGACAGAGACAGACAGACAAAGACCCTAAAACACTCCTCTCATTGATAAAAACACTCCTCCCATCCACAGCCCACCGATATGCCATATGTCTTCTTTCCCAACTACACACAGGTGCACACACACAGAAGTGCACACTCACAGCCATGCACTCACACATGCACACAGGTGCACAAACATACACGTGCGCACACACACACAGAACATGCATGCACCCACATACAAGGGCTCACACATGCCTGGGTATGCATCCTGGGTCTTATTATTGCATAGCCCTCCAGGCTCAGAAAGAGTTAAGTTACCCTCAGTGCATAAATCAAAAGTTCAAGGCTGCACCACACCACAATGATCTCCTCTTTACATATGACGAGAACCAGAGAGAGGCTACAGTCCCAAGCATCCTGAGTGGGTCTCCCAGGCCCGCACAGGTTACACCGCCGGGGTCAGGGTGGAGGACCTTTAGCAGCAACATTCATTTCCTGAACAGGACAAGCCCTCCTGACCATAAAGCTAATAAGAACTTCCTCGCACGGCCGAGCTCCGGCTGACAGGGCGACTTGTCACCGGTCACGCAGGAGGAAAACGCTGGTTCCCATTAGAGGCTTATGATGCCAGGTGCTCCTAATAAGGCACCTCAGCGAGAAACAAGAGCCTGCTAAGTCCTGGCTCCAACTCTGGAAGTAATCAGGCCCGGGCTTCGGGGATTAAGGAGGGGCCTTCCTTGAAGAAATGGGGGAGGGGGTGGCCTCCGTAGACCCCTGGCAGCCGCTAACCTGCTGAATGACTTAAATAAATAAATTCCCAACCATCCTTCCATTTCTTTCCCAGTCACCATAAAAGACTCCCCCAAATTAACACTAGTAATGCTTCCCCTCCGTACTCTGGGCTTGATGGATTGCCCAGAGGGCCATTACGTTAGGGCCAGATCTGCTTCCCATGGTGGCAAGGAGGGTCGTGCCAACAGTCCTAATGGCACTGAGATCACAACCCTCAGCTAATCCACTTAGCCCAGAAGAGGATGACAAGGGGCTCAGTGGCTCTCCTATCAGGCTGGGGTCACAAGGGAAGTGGAAGGTACATAGGCTACTCCCGACTCCATGCCTGCTGCTACCAGTTAACTCACTCTTTGCTTCTGCATATTACCGCCCCGTCCTGTGTAAAGACCACAGTTTGATGGAGGGTGGGTCTTATTTTTAGCAGGTCCGATGGATGTGCTGCATATCTTTACCGAGACTGGGGACTCCTATGGGCTGAAAAGAACTTAAGACAGGACTAGAGTTTTTACCTCTTCACCAAAATATCGGAAACCAGGTCTTTTAGAAATCCCCCCAGCAGTGCCCTGCTGTTTCAGGAAGTCCTTCCTCTTACCTAACTTGGATGCTTCCTCTGGTAATGCTCAACTCAATCTGTGCACATTGTAGACACTCGGGCCTCAGGGTCAGAGTGGAACGTGAGTTCAGAACTGAGATTCAAACAGGATTTGGGGGAGTTTTAGCCGAAGTTTCCATGCTGACAAGAAAGGGCCAGAGCCCCTCCCCACAGCTGCAGAGTTAAGCTTCGCATAGGCAAAACCCAAGCATAGCTGTTTTCAGACTGAGCCAGCATCATAAGAACACAGGGGCTTTTAAGGGGAAACAGTAAAAGGGGGGGATTTCTGATTCTACTGGCGTGGAATTAACAATGCGGAATTTTTATTTTCGAAAATGGGTTTCTTTTCCCCTCCCTGTTCTGGTTTTTCTGTTTTTCTAGTCAGCATAAATAAAAAGCTAGAGGCCAGTCGCTCTGTCCATAAGCCGTGACTCGGGGCTTCCTGGATCTGTGTGGTCTGGCCCCCTGAACACCTGTTGACTACTGCATTTGCAGGTGACTGGCCTCTGAAGTGACCAGGAGACATGAGAAGCCGGAGCAGCTCCCTCAGCTTTAGGGAAAATGAGTCCTGGTATCCTTCCCTGCTTACCACAGACAAGTCCACTAACCTCTTGGGCTTTCCTTGGCCCTCAGGAATGTAAAACTAACAACCCCCTAACAGGCCAGCTAGGAGCTAACCAGAGCACTTAGCCCAGAAGCTGACATGTGACATTGAAAGCTGTCCCTGAACCACTATGGGAAGGATGCCTAGGGAGAGAGCTCCCAGCCCTTAGCGTTCAATGTGAGACCAGCCCATGATTGCCCGCAGTAAGGTAGTCCCTGTGCCAACTGCCCCTGCACCACAGAGCCCCACACACAGCCCTGAGCATGCAGAGTAGACACCGCCTCTGTGCTCTGCATGTAGGGCTGACAGCAGCAGCACTGCCCAGCTACGTTTAAAGAACTGGCATGAGTCACGAGGCCCTGGGTCAATGGGACAAAGTGTACCCGGACGCCAGGGTGCATCCATCGACTTCCCAGGAAAGCCAAGAGGTGCATGCAGTCAGTCACCACCCCAACACACACACTCACCACAGCAGTTTTACAATGCTGAAGGCATAGACAGGCCATACCGGAGAGCAATGTCTCTGGGAAGCAGGGGTTGAATGACATAGCACGCCGTGAACCTGTACTGCAGGCTTGTCCTTCTGCACAATAGCAATGGCTACCAAATGGCTGACACCTACGGAGCGCATGCATTGTGCGTTTCCATGCGTGGCAAATATTTACACGTCACCCCTTATAATGACCCCCTGAGTGGGTCCTGTTATTCCCATTTTACAAATGAACAGACAGGC
Variant Nucleotide:
Position
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,163,130 - 49,166,093 (+)RGD
Rnor_6.0853,132,882 - 53,135,845 (+)RGD
Aliases: NC_005107.4:g.53132882_53135845del




Related Rat Strains
The following Strains have been annotated to Zbtb16Lx-var1
SHR.PD-(D8Mgh9-D8Rat149)/Cub     SHR.PD-(D8Rat42-D8Arb23)/Cub    


References - curated
# Reference Title Reference Citation
1. Deletion of a conserved noncoding sequence in Plzf intron leads to Plzf down-regulation in limb bud and polydactyly in the rat. Liska F, etal., Dev Dyn. 2009 Mar;238(3):673-84.

Additional Information