RGD Reference Report - Sequence variation and expression of the Gimap gene family in the BB rat. - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Sequence variation and expression of the Gimap gene family in the BB rat.

Authors: Rutledge, EA  Fuller, JM  Van Yserloo, B  Moralejo, DH  Ettinger, RA  Gaur, P  Hoehna, JL  Peterson, MR  Jensen, R  Kwitek, AE  Lernmark, A 
Citation: Rutledge EA, etal., Exp Diabetes Res. 2009;2009:835650. Epub 2009 May 3.
RGD ID: 6893458
Pubmed: (View Article at PubMed) PMID:19421422
DOI: Full-text: DOI:10.1155/2009/835650

Positional cloning of lymphopenia (lyp) in the BB rat revealed a frameshift mutation in Gimap5, a member of at least seven related GTPase Immune Associated Protein genes located on rat chromosome 4q24. Our aim was to clone and sequence the cDNA of the BB diabetes prone (DP) and diabetes resistant (DR) alleles of all seven Gimap genes in the congenic DR.lyp rat line with 2 Mb of BB DP DNA introgressed onto the DR genetic background. All (100%) DR.(lyp/lyp) rats are lymphopenic and develop type 1 diabetes (T1D) by 84 days of age while DR.(+/+) rats remain T1D and lyp resistant. Among the seven Gimap genes, the Gimap5 frameshift mutation, a mutant allele that produces no protein, had the greatest impact on lymphopenia in the DR.(lyp/lyp) rat. Gimap4 and Gimap1 each had one amino acid substitution of unlikely significance for lymphopenia. Quantitative RT-PCR analysis showed a reduction in expression of all seven Gimap genes in DR.(lyp/lyp) spleen and mesenteric lymph nodes when compared to DR.(+/+). Only four; Gimap1, Gimap4, Gimap5, and Gimap9 were reduced in thymus. Our data substantiates the Gimap5 frameshift mutation as the primary defect with only limited contributions to lymphopenia from the remaining Gimap genes.

Objects referenced in this article
Strain BBDR.BBDP-(D4Mit6-D4Mit24)/Rhw null Rattus norvegicus
Strain BBDR.BBDP-(D4Rhw11-D4Rhw10)/Rhw null Rattus norvegicus

Additional Information