Scort7 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scort7 (Serum corticosterone level QTL 7) Rattus norvegicus

Symbol: Scort7
Name: Serum corticosterone level QTL 7
RGD ID: 9590147
Previously known as: plasma cort at basal level; plasma corticosterone at basal level
Trait: blood corticosterone amount   (VT:0005345)    
Measurement Type: plasma corticosterone level   (CMO:0001173)    
LOD Score: 13.61
P Value: 0.001
Variance: 10.2
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2121 - 42,110,980RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.012150,810 - 45,150,810RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0122,163,091 - 47,163,091RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4121 - 43,432,667RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D12Mit2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,610,870 - 19,611,091 (+)MAPPER
Rnor_6.01222,650,702 - 22,650,918NCBI
Rnor_5.01224,662,983 - 24,663,199UniSTS
RGSC_v3.41220,932,560 - 20,932,776UniSTS
RGSC_v3.41220,932,559 - 20,932,776RGD
Celera1221,386,630 - 21,386,846UniSTS
RGSC_v3.11220,922,171 - 20,922,388RGD
RH 3.4 Map12280.3RGD
RH 3.4 Map12280.3UniSTS
RH 2.0 Map12205.1RGD
SHRSP x BN Map1222.7RGD
FHH x ACI Map129.01RGD
Cytogenetic Map12q11-q12UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 20.9-28.2 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: blood samples were taken in the morning and collected on EDTA, centrifuged at 4000g for 10 min to extract the plasma, plasma corticosterone was measured with an in-house RIA kit using an anti-Cort antibody 8694157
qtl_general software package used: MultiQTL software 8694157
qtl_general an additional peak at D12Rat53 with confidence interval 42.3-46.8 Mb was observed 8694157