Alc36 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc36 (Alcohol consumption QTL 36) Rattus norvegicus

Symbol: Alc36
Name: Alcohol consumption QTL 36
RGD ID: 8693697
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: calculated ethanol drink intake rate   (CMO:0001615)    
LOD Score: 2.0
P Value: 0.592
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82219,814,164 - 239,320,906RGD_MAPPER_PIPELINE
mRatBN7.22217,139,753 - 236,660,713RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02233,013,605 - 253,626,471RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.02252,346,818 - 272,324,965RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.42225,986,081 - 245,974,908RGD_MAPPER_PIPELINERGSC_v3.4
Cross Type: Not Available
Strains Crossed: BXH/Ipcv HXB/Ipcv 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Is the Alcohol Deprivation Effect Genetically Mediated? Studies with HXB/BXH Recombinant Inbred Rat Strains. Vanderlinden LA, etal., Alcohol Clin Exp Res. 2014 Jun 24. doi: 10.1111/acer.12471.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41007455LOC120101128U4 spliceosomal RNA2219906077219906158Rat
41362352LOC120100617uncharacterized LOC1201006172219927728219956145Rat
2320329Oat-ps1ornithine aminotransferase, pseudogene 12219993405219994540Rat
402064202LOC134485963uncharacterized LOC1344859632220321269220332081Rat
11389356LOC108350289uncharacterized LOC1083502892220332086220332878Rat
3331Pitx2paired-like homeodomain 22220391417220411588Rat
621228Enpepglutamyl aminopeptidase2220456258220526218Rat
402002651LOC134485687large ribosomal subunit protein eL8-like2220473052220474188Rat
402373014LOC134485964uncharacterized LOC1344859642220525979220528834Rat
402363751LOC134485764uncharacterized LOC1344857642220629312220631174Rat
41094358Psmb7-ps1proteasome 20S subunit beta 7, pseudogene 12220643533220645040Rat
628880Dcm5Dcm5 protein2220676192220676959Rat
620585Elovl6ELOVL fatty acid elongase 62220738095220845528Rat
2542Egfepidermal growth factor2220893660220976331Rat
1559637Lrit3leucine-rich repeat, Ig-like and transmembrane domains 32221011458221034568Rat
1308948Rrhretinal pigment epithelium derived rhodopsin homolog2221036436221048627Rat
1563995Gar1GAR1 ribonucleoprotein2221049471221056749Rat
402442703LOC134485966uncharacterized LOC1344859662221056814221057911Rat
620429Cficomplement factor I2221062206221104790Rat
40944945LOC120100942uncharacterized LOC1201009422221097093221110548Rat
1304662Pla2g12aphospholipase A2, group XIIA2221110722221126966Rat
402317538LOC134485965uncharacterized LOC1344859652221126702221134549Rat
70967Casp6caspase 62221140287221152727Rat
1305326Mcubmitochondrial calcium uniporter dominant negative subunit beta2221153525221223814Rat
1309358Sec24bSEC24 homolog B, COPII coat complex component2221236897221306986Rat
41155962Trnak-uuutransfer RNA lysine (anticodon UUU)2221324883221324955Rat
1590105Col25a1collagen type XXV alpha 1 chain2221429378221828536Rat
41087078LOC120101132U4 spliceosomal RNA2221567801221567931Rat
9069995LOC103691705uncharacterized LOC1036917052221629572221635966Rat
1590098Etnpplethanolamine-phosphate phospho-lyase2221847210221868827Rat
402228326LOC134485967uncharacterized LOC1344859672221871236221877103Rat
1560708Ostcoligosaccharyltransferase complex non-catalytic subunit2221924727221940253Rat
1309402Rpl34ribosomal protein L342221958551221962309Rat
402074908LOC134485685uncharacterized LOC1344856852221959842221960341Rat
11382083LOC108350107uncharacterized LOC1083501072222023591222032182Rat
11410644Rpl21l1ribosomal protein L21 like 12222059351222059923Rat
11422469LOC108350291uncharacterized LOC1083502912222105302222111661Rat
41394203LOC120100619uncharacterized LOC1201006192222113555222115299Rat
402315616LOC134485765uncharacterized LOC1344857652222281835222285953Rat
402379058LOC134485766uncharacterized LOC1344857662222297145222297988Rat
402427225LOC134485968uncharacterized LOC1344859682222309033222340882Rat
620241Lef1lymphoid enhancer binding factor 12222340541222453931Rat
9101519Lef1llymphoid enhancer binding factor 1 like2222346013222372942Rat
41380471LOC120100943uncharacterized LOC1201009432222386081222387346Rat
69321Hadhhydroxyacyl-CoA dehydrogenase2222462049222504446Rat
1309433Cyp2u1cytochrome P450, family 2, subfamily u, polypeptide 12222523516222541055Rat
7625966Aimp1-ps1aminoacyl tRNA synthetase complex-interacting multifunctional protein 1, pseudogene 12222536021222538239Rat
402103005LOC134485686uncharacterized LOC1344856862222541239222547829Rat
1305778Sgms2sphingomyelin synthase 22222567661222641804Rat
11404996LOC108350108uncharacterized LOC1083501082222590937222625683Rat
1308081Papss13'-phosphoadenosine 5'-phosphosulfate synthase 12222646103222788475Rat
402078187LOC134485969uncharacterized LOC1344859692222649143222650225Rat
41260335LOC120100944uncharacterized LOC1201009442222649584222653074Rat
402224790LOC134485970uncharacterized LOC1344859702222663752222665760Rat
41156518Pbdc1-ps2polysaccharide biosynthesis domain containing 1, pseudogene 22222694155222696605Rat
40994666Rnvu1-6RNA, variant U1 small nuclear 62222880320222880483Rat
1594188Actr10-ps1actin related protein 10, pseudogene 12223227682223228896Rat
1308639Dkk2dickkopf WNT signaling pathway inhibitor 22223242375223334249Rat
402289887LOC134485971uncharacterized LOC1344859712223628086223633168Rat
41214852Rnu6-482RNA, U6 small nuclear 4822223712102223712204Rat
402148053LOC134485767uncharacterized LOC1344857672223733204223737169Rat
7738424LOC102547683uncharacterized LOC1025476832223764884223777924Rat
1563706Gimd1GIMAP family P-loop NTPase domain containing 12223777876223812582Rat
620466Aimp1aminoacyl tRNA synthetase complex-interacting multifunctional protein 12223825930223849477Rat
1307816TbckTBC1 domain containing kinase2223849758224022097Rat
41108173LOC120101311small nucleolar RNA SNORA172223968682223968811Rat
1593709Npntnephronectin2224065191224133567Rat
1590828Meak7-ps1MTOR associated protein, eak-7 homolog, pseudogene 12224133300224139854Rat
7720012LOC102548236uncharacterized LOC1025482362224164957224173162Rat
1311822Gstcdglutathione S-transferase, C-terminal domain containing2224173764224268743Rat
1359136Ints12integrator complex subunit 122224265787224283523Rat
1311728Arhgef38Rho guanine nucleotide exchange factor 382224284238224413974Rat
7572082LOC102546359uncharacterized LOC1025463592224472328224472738Rat
1307965Ppa2inorganic pyrophosphatase 22224472738224552101Rat
1591740Gpbp1l2GC-rich promoter binding protein 1-like 22224638050224641476Rat
1311625Tet2tet methylcytosine dioxygenase 22224662654224746819Rat
41280602LOC120101230small nucleolar RNA SNORA702224784983224785104Rat
2323726Rpl10l4ribosomal protein L10 like 42224785104224785552Rat
40967376LOC120101282small nucleolar RNA SNORA172224788425224788556Rat
11437904LOC108350114glyceraldehyde-3-phosphate dehydrogenase pseudogene2224801464224815519Rat
402156922LOC134485972uncharacterized LOC1344859722225013883225029263Rat
41224173LOC120100946uncharacterized LOC1201009462225303058225307192Rat
402443883LOC134478856uncharacterized LOC1344788562225322857225342454Rat
69228Cxxc4CXXC finger protein 42225329044225363347Rat
2323572Dtwd2-ps1DTW domain containing 2, pseudogene 12225462033225463259Rat
402131152LOC134485805peptidyl-prolyl cis-trans isomerase A-like2225484247225484870Rat
402348161LOC134485768uncharacterized LOC1344857682225910909225913615Rat
3810Tacr3tachykinin receptor 32225940497226037756Rat
401990546LOC134485806uncharacterized LOC1344858062226130729226211152Rat
41360797LOC12010062140S ribosomal protein S26-like2226272331226272693Rat
1589432Myl12a-ps1myosin light chain 12A, pseudogene 12226284444226284956Rat
1307115Cenpecentromere protein E2226310970226369636Rat
1309898Bdh23-hydroxybutyrate dehydrogenase 22226376346226397010Rat
1598112Slc9b2solute carrier family 9 member B22226400358226435039Rat
1305087Slc9b1solute carrier family 9 member B12226442892226502966Rat
402258771LOC134485973uncharacterized LOC1344859732226485343226491550Rat
41037515LOC120101362small nucleolar RNA SNORA262226498426226498546Rat
1566242Cisd2CDGSH iron sulfur domain 22226502517226527325Rat
619912Ube2d3ubiquitin-conjugating enzyme E2D 32226543194226571001Rat
1305785Manbamannosidase beta2226583968226676520Rat
40993262LOC120101140U6 spliceosomal RNA2226689104226689210Rat
70498Nfkb1nuclear factor kappa B subunit 12226689745226805897Rat
41144425Rnu2-72p1RNA, U2 small nuclear 72, pseudogene 12226819140226819241Rat
402161529LOC134485974uncharacterized LOC1344859742226819753226827894Rat
1308236Slc39a8solute carrier family 39 member 82226845686226992668Rat
402107178LOC134485807probable cyclin-dependent serine/threonine-protein kinase DDB_G02925502226847752226859545Rat
11462118LOC10835011660S ribosomal protein L7 pseudogene2226895017226896027Rat
1564639Bank1B-cell scaffold protein with ankyrin repeats 12227203998227474008Rat
9294131Rpl29l8ribosomal protein L29 like 82227488640227488948Rat
3382Ppp3caprotein phosphatase 3 catalytic subunit alpha2227839058228113560Rat
402058324LOC134485975uncharacterized LOC1344859752228098426228110764Rat
1588169Pacsin3-ps1protein kinase C and casein kinase substrate in neurons 3, pseudogene 12228147507228148666Rat
40939843LOC120100622uncharacterized LOC1201006222228559005228561980Rat
1303218Emcnendomucin2228564445228644370Rat
41011800LOC120100949uncharacterized LOC1201009492228730612228748231Rat
402442199LOC134485976uncharacterized LOC1344859762228737064228741590Rat
2322961Ddit4lDNA-damage-inducible transcript 4-like2228800831228804478Rat
402228603LOC134485977uncharacterized LOC1344859772228841632228855650Rat
11496584LOC108350121uncharacterized LOC1083501212228878929228881618Rat
11399629LOC108350122uncharacterized LOC1083501222228976010228991970Rat
7562111Rpl17-ps6ribosomal protein L17, pseudogene 62229000333229000908Rat
621464H2az1H2A.Z variant histone 12229026464229031411Rat
1591949Dnajb14DnaJ heat shock protein family (Hsp40) member B142229032415229075905Rat
1307133Lamtor3late endosomal/lysosomal adaptor, MAPK and MTOR activator 32229084795229097028Rat
1310189Dapp1dual adaptor of phosphotyrosine and 3-phosphoinositides 12229099319229148868Rat
41077741LOC120100950uncharacterized LOC1201009502229112267229115725Rat
41162421LOC120100951uncharacterized LOC1201009512229154195229159050Rat
1590827Nlk-ps1nemo like kinase, pseudogene 12229191093229193130Rat
1591948Mindy3-ps1MINDY lysine 48 deubiquitinase 3, pseudogene 12229195234229200559Rat
7750470LOC102555623uncharacterized LOC1025556232229232139229251293Rat
7695964C2h4orf54similar to human chromosome 4 open reading frame 542229253995229272761Rat
402394419LOC134485978uncharacterized LOC1344859782229263521229264486Rat
1308388Mttpmicrosomal triglyceride transfer protein2229286501229327650Rat
1594565Trmt10atRNA methyltransferase 10A2229342853229357573Rat
1309170C2h4orf17similar to human chromosome 4 open reading frame 172229367215229395674Rat
402138348LOC134485979uncharacterized LOC1344859792229367607229368614Rat
1584721Metap2-ps4methionyl aminopeptidase 2, pseudogene 42229412114229413987Rat
621638Adh7alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide2229422125229436584Rat
402301680LOC134485980uncharacterized LOC1344859802229433343229435515Rat
2044Adh1calcohol dehydrogenase 1C (class I), gamma polypeptide2229470703229482291Rat
1310029Adh6aalcohol dehydrogenase 6A (class V)2229497121229519403Rat
1595864Adh1-ps1alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 12229536380229554556Rat
11424141LOC108350123uncharacterized LOC1083501232229552669229556745Rat
1306313Adh6alcohol dehydrogenase 6 (class V)2229576612229608359Rat
402065677LOC134485688uncharacterized LOC1344856882229615193229618759Rat
71028Adh4alcohol dehydrogenase 4 (class II), pi polypeptide2229622092229640120Rat
2292706Adh5alcohol dehydrogenase 5 (class III), chi polypeptide2229648557229660964Rat
1305545Metap1methionyl aminopeptidase 12229664677229697730Rat
7699806LOC102556448uncharacterized LOC1025564482229719801229725607Rat
69647Eif4eeukaryotic translation initiation factor 4E2229736309229772628Rat
9685091Mir1956microRNA 19562229739895229739957Rat
402326973LOC134485689uncharacterized LOC1344856892229856997229865098Rat
7743957LOC102547266uncharacterized LOC1025472662229911960229945023Rat
402361176LOC134485690CRACD-like protein2229946227229967569Rat
1303176Tspan5tetraspanin 52229967521230139012Rat
1560590Hspa8-ps20heat shock protein family A (Hsp70) member 8, pseudogene 202230160816230163937Rat
1308558Rap1gds1Rap1 GTPase-GDP dissociation stimulator 12230173713230318555Rat
41024593LOC120100955uncharacterized LOC1201009552230203425230235335Rat
41206447Nme2-ps3NME/NM23 nucleoside diphosphate kinase 2, pseudogene 32230369846230370829Rat
41129485LOC120101272small nucleolar RNA SNORA482230392313230392457Rat
1591946Stpg2sperm-tail PG-rich repeat containing 22230434014230958932Rat
6496054Cycs-ps2cytochrome c, somatic, pseudogene 22230730844230733472Rat
41210344LOC120101136U6 spliceosomal RNA2230732391230732497Rat
41257633LOC120101162U6 spliceosomal RNA2230843032230843138Rat
1590825Rps10-ps14ribosomal protein S10, pseudogene 142230974351230974831Rat
402082387LOC134485983uncharacterized LOC1344859832231093085231125436Rat
402419547LOC134485981uncharacterized LOC1344859812231106017231109217Rat
402146452LOC134485982uncharacterized LOC1344859822231125261231132070Rat
41331959LOC120101220U7 small nuclear RNA2231165158231165221Rat
402031311LOC134485769uncharacterized LOC1344857692231227171231232440Rat
41253766U2l4U2 spliceosomal RNA like 42231239296231239448Rat
40946169Trnav-aac23transfer RNA valine (anticodon AAC) 232231440675231440745Rat
2321664Aspscr1-ps1ASPSCR1 tether for SLC2A4, UBX domain containing, pseudogene 12231465538231466973Rat
402166808LOC134485984uncharacterized LOC1344859842231532137231564881Rat
402249714LOC134485770uncharacterized LOC1344857702232024900232027503Rat
41096450LOC120100956uncharacterized LOC1201009562232201755232218190Rat
402167733LOC134485985uncharacterized LOC1344859852232512304232513568Rat
9089379LOC103691720uncharacterized LOC1036917202232535920232549379Rat
620095Pdha2pyruvate dehydrogenase E1 subunit alpha 22232545550232547098Rat
402036734LOC134485986uncharacterized LOC1344859862232681403232686031Rat
735109Unc5cunc-5 netrin receptor C2232854352233208482Rat
402317138LOC134485692uncharacterized LOC1344856922233119094233120165Rat
1595863Bmpr1bbone morphogenetic protein receptor type 1B2233211525233544344Rat
402062000LOC134485693nuclear receptor subfamily 4 group A member 3-like2233578190233599549Rat
621076Pdlim5PDZ and LIM domain 52233625478233793582Rat
402195705LOC134485694uncharacterized LOC1344856942233796300233872756Rat
41040699Rpl39-ps9ribosomal protein L39, pseudogene 92233827801233832207Rat
1311040Gbp5guanylate binding protein 52233910999233930320Rat
1583235Gbp7guanylate binding protein 72233948774233970532Rat
1310579Gbp4guanylate binding protein 42233978163233992124Rat
621810Gbp2guanylate binding protein 22234005727234021812Rat
402278812LOC134485987uncharacterized LOC1344859872234039059234049379Rat
1311877Gbp1guanylate binding protein 12234071366234106012Rat
402158866LOC134485808guanylate-binding protein 3-like2234133430234144083Rat
1597766Gbp3guanylate binding protein 32234144042234173527Rat
41121145LOC120101154U6 spliceosomal RNA2234186993234187099Rat
1560801Gbp1-ps1guanylate binding protein 1, pseudogene 12234190708234199103Rat
1584233Gbp6-ps2guanylate binding protein 6, pseudogene 22234302483234333245Rat
1359262Kyat3kynurenine aminotransferase 32234362306234407646Rat
11361756LOC108350125uncharacterized LOC1083501252234418900234427603Rat
619735Gtf2bgeneral transcription factor IIB2234427734234446043Rat
41219769Rnu6-503RNA, U6 small nuclear 5032234436952234437058Rat
620146Pkn2protein kinase N22234454001234559369Rat
7740925LOC102546591uncharacterized LOC1025465912234593295234604688Rat
41182245LOC120100957uncharacterized LOC1201009572234635840234647446Rat
11452044LOC108350126uncharacterized LOC1083501262234745067234748198Rat
41097702LOC120100959uncharacterized LOC1201009592235095437235115148Rat
41187575LOC120100958uncharacterized LOC1201009582235101407235116824Rat
7633711LOC102546938uncharacterized LOC1025469382235212815235265284Rat
41208624LOC120100960uncharacterized LOC1201009602235763012235810733Rat
41287178LOC120100961uncharacterized LOC1201009612235793439235804314Rat
1305670Lmo4LIM domain only 42235924574235941609Rat
402404940LOC134485988uncharacterized LOC1344859882236011458236025501Rat
401988755LOC134485989uncharacterized LOC1344859892236044293236046554Rat
402335524LOC134485990uncharacterized LOC1344859902236048868236053607Rat
11484619LOC108350128uncharacterized LOC1083501282236131313236138283Rat
402409306LOC134485991uncharacterized LOC1344859912236146036236151424Rat
7597955LOC102549483uncharacterized LOC1025494832236151051236166214Rat
1305366Hs2st1heparan sulfate 2-O-sulfotransferase 12236168391236302186Rat
621291Selenofselenoprotein F2236302439236335216Rat
41169203LOC120100962uncharacterized LOC1201009622236302796236308319Rat
40954943LOC120100963uncharacterized LOC1201009632236390379236402645Rat
1304859Sh3glb1SH3 domain -containing GRB2-like endophilin B12236411194236445225Rat
621100Clca5chloride channel accessory 52236456923236479220Rat
1591945Clca4lchloride channel calcium activated 4-like2236486485236506483Rat
402146897LOC134478851uncharacterized LOC1344788512236486910236487963Rat
7715322LOC102549543uncharacterized LOC1025495432236496038236505252Rat
1303234Clca4chloride channel accessory 42236543975236565096Rat
1306258Clca1chloride channel accessory 12236599022236624714Rat
1304894Clca2chloride channel accessory 22236655419236682669Rat
402432697LOC134485995uncharacterized LOC1344859952236685967236686627Rat
1593831Odf2louter dense fiber of sperm tails 2-like2236696158236733090Rat
1565539Col24a1collagen type XXIV alpha 1 chain2236872583237129768Rat
402202727LOC134485997uncharacterized LOC1344859972236989886236990407Rat
402091439LOC134485996uncharacterized LOC1344859962237039005237040727Rat
1308723Znhit6zinc finger, HIT-type containing 62237147014237178279Rat
41217598LOC120101145U6 spliceosomal RNA2237160376237160482Rat
620763Ccn1cellular communication network factor 12237222730237225689Rat
7709092LOC102553018uncharacterized LOC1025530182237225721237301386Rat
70968Ddah1dimethylarginine dimethylaminohydrolase 12237327812237460624Rat
40962343LOC120100964uncharacterized LOC1201009642237440783237448867Rat
620544Bcl10BCL10, immune signaling adaptor2237501181237510821Rat
1560065C2h1orf52similar to human chromosome 1 open reading frame 522237510974237520346Rat
41195544Rnu5e5RNA, U5E small nuclear 52237524576237524691Rat
402415510LOC134485992uncharacterized LOC1344859922237532002237534573Rat
1564206Syde2synapse defective Rho GTPase homolog 22237557395237591290Rat
1308420Mcoln3mucolipin TRP cation channel 32237596544237705770Rat
1563105Dnai3dynein axonemal intermediate chain 32237608202237666465Rat
1308884Mcoln2mucolipin TRP cation channel 22237714100237762979Rat
620565Lpar3lysophosphatidic acid receptor 32237785371237854199Rat
41114961Rnu6-777RNA, U6 small nuclear 7772237941316237941414Rat
708490Ssx2ipSSX family member 2 interacting protein2237958286237991026Rat
621338Ctbschitobiase2238000800238015368Rat
1359500Spata1spermatogenesis associated 12238009403238054855Rat
620807Gng5G protein subunit gamma 52238054954238063451Rat
401979236LOC134485993uncharacterized LOC1344859932238055066238055718Rat
1559755Rpf1ribosome production factor 12238063294238077817Rat
402054653LOC134485809small ribosomal subunit protein eS12-like2238112805238113492Rat
70901Dnase2bdeoxyribonuclease 2 beta2238131182238168041Rat
621369Uoxurate oxidase2238147130238183320Rat
708544Samd13sterile alpha motif domain containing 132238194962238200790Rat
41364636LOC120100965uncharacterized LOC1201009652238200893238203202Rat
40988647LOC120100966uncharacterized LOC1201009662238214579238216375Rat
402350354LOC134485994uncharacterized LOC1344859942238266449238276171Rat
1310574Prkacbprotein kinase cAMP-activated catalytic subunit beta2238297140238389317Rat
1566117Ttll7tubulin tyrosine ligase like 72238425786238549296Rat
11471726LOC108350293uncharacterized LOC1083502932238869525238873529Rat
40936735LOC120100967uncharacterized LOC1201009672239005598239011785Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34495D2Mgh291442221088977221089121Ratregion
11478D2Mgh131412238161243238161384Ratregion
36081D2Rat2941612229819853229820014Ratregion
37424D2Rat1111192226890962226891081Ratregion
37552D2Rat1851772231732847231733024Ratregion
36962D2Rat631252225110556225110681Ratregion
37796D2Rat1032092234531451234531660Ratregion
34785D2Rat651622228775743228775905Ratregion
34864D2Rat671652236904795236904960Ratregion
34906D2Rat2461282230247215230247343Ratregion
35915D2Rat611982220931218220931416Ratregion
38054D2Rat1382392223840857223841096Ratregion
40540D2Rat2491392229488277229488416Ratregion
38554D2Rat1122142235034537235034751Ratregion
38852D2Rat1652692223709669223709938Ratregion
38942D2Rat1562022221677801221678003Ratregion
39118D2Rat1391492226164337226164486Ratregion
39240D2Rat921702229609498229609668Ratregion
39268D2Rat1291382237902673237902811Ratregion
41150D2Rat2481982228632259228632457Ratregion
41462D2Rat2451362227486834227486970Ratregion
42624D2Rat3611512222038035222038186Ratregion
42626D2Rat3902002220155050220155250Ratregion
42628D2Rat2931522227460450227460602Ratregion
42630D2Rat3641152230247228230247343Ratregion
41066D2Rat2471572228950586228950743Ratregion
41752D2Rat3632222222499196222499418Ratregion
43306D2Got1642372237210823237211060Ratregion
60794D2Wox351352230628399230628534Ratregion
60299D2Got1612302233457467233457697Ratregion
61323D2N352342221199885221200119Ratregion
66474D2Uia122212223034969223035190Ratregion
66531D2Mco51062225698263225698369Ratregion
67795D2Uwm112612224656172224656433Ratregion
1630255D2Got3551522222976507222976659Ratregion
1627216D10Mco294132222898673222899086Ratregion
1629030D2Got3601332227103730227103863Ratregion
1633066D2Got4111962228936600228936796Ratregion
1636228D2Got3821302228975427228975557Ratregion
1636408D2Wox682182221199879221200097Ratregion
7364904rs10746442802220580657220580657Ratregion
8693312rs1054953062223810546223810546Ratregion
8693316rs1057769942219814164219814164Ratregion
5033847RH1403391412221237465221237606Ratregion
5027259AF0601781462236170456236170602Ratregion
5051360AV2669431052238009564238009669Ratregion
5049896RH1337441842237222986237223170Ratregion
5043998RH1303512092228113171228113380Ratregion
5044496RH1306361812228805872228806053Ratregion
5046518RH1317992032238548993238549196Ratregion
8663447rs1065472862229700214229700214Ratregion
8663448rs639997392233692870233692870Ratregion
5080340RH1415232092224173965224174174Ratregion
5071074RH1348711832229439884229440067Ratregion
5071150RH1349167252221153616221154341Ratregion
5071872RH1353342032230174343230174546Ratregion
8693332rs657856262239320906239320906Ratregion
5067864AU0474902202221507066221507286Ratregion
5068410AU0471621242229483203229483327Ratregion
5068794AU0469262902228873324228873614Ratregion
5064832AA9239281992234021532234021731Ratregion
5086431BE1150465842229254315229254899Ratregion
5088036Papss12142222787814222788028Ratregion
5085202BE0964081592222527822222527981Ratregion
5505320Unc5c4222233207657233208079Ratregion
10755485rs645129622231474293231474293Ratregion
Position Markers

Flank 1: (rs105776994)
Rat AssemblyChrPosition (strand)Source
GRCr82219,814,164 - 219,814,164RGD
mRatBN7.22217,139,753 - 217,139,753RGD
Rnor_6.02233,013,605 - 233,013,605RGD
Celera2209,443,215 - 209,443,215RGD
Flank 2: (rs65785626)
Rat AssemblyChrPosition (strand)Source
GRCr82239,320,906 - 239,320,906RGD
mRatBN7.22236,660,713 - 236,660,713RGD
Rnor_6.02253,626,471 - 253,626,471RGD
Celera2228,627,342 - 228,627,342RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
1302789Stl26Serum triglyceride level QTL 263.10.0035blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)2206613059226891081Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2209350500221678003Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221270493228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2205135267225627153Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general measurement method: rats were given 10% EtOH for 1 week, then for 7 weeks they were given 2-bottle choice of water and EtOH followed by 2 week period of only water (alcohol deprivation); then 2 weeks of 2-bottle choice of water and EtOH followed by second 2 weeks of alcohol deprivation then 2 weeks of 2-bottle choice of water and EtOH followed by third 2 weeks of alcohol deprivation and 1 week of 2-bottle choice of water and EtOH 8663441
qtl_general water and alcohol consumption were measured by weight 8663441
qtl_general alcohol deprivation effect (ADE) was calculated as the amount of alcohol consumed (g/kg) during 24 hrs after deprivation minus average daily amount consumed in the week before deprivation period 8663441
qtl_general this QTL correlates to week 15 post-ADE alcohol consumption 8663441
qtl_general software used: ANOVA 8663441
qtl_general number of animals used: 70-100 days old males from HXB/BXH RI strains and the parental BN-Lx/CubPrin, SHR/OlaIpcvPrin 8663441
qtl_general spans 252.3-272.3 Mb 8663441