Alc27 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc27 (Alcohol consumption QTL 27) Rattus norvegicus

Symbol: Alc27
Name: Alcohol consumption QTL 27
RGD ID: 8693632
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: calculated ethanol drink intake rate   (CMO:0001615)    
LOD Score: 2.2
P Value: 0.791
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2634,323,357 - 51,121,479RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0634,257,766 - 53,855,198RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0644,031,135 - 63,475,800RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4635,121,447 - 53,078,918RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: BXH/Ipcv HXB/Ipcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Is the Alcohol Deprivation Effect Genetically Mediated? Studies with HXB/BXH Recombinant Inbred Rat Strains. Vanderlinden LA, etal., Alcohol Clin Exp Res. 2014 Jun 24. doi: 10.1111/acer.12471.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1586345Hspa8-ps25heat shock protein family A (Hsp70) member 8, pseudogene 2563462402634626138Rat
41331744LOC120093456small nucleolar RNA SNORA1763476947034769595Rat
1586329Hat1-ps1histone acetyltransferase 1, pseudogene 163484247134843593Rat
1586335Rpl27l8ribosomal protein L27 like 863486773334868179Rat
1305961CyriaCYFIP related Rac1 interactor A63504520835150669Rat
2322296Cox7cl1cytochrome c oxidase subunit 7C like 163532699535327273Rat
1565679Rpl27a-ps14ribosomal protein L27a, pseudogene 1463550127535501755Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 363558021135580283Rat
41335282LOC120093419small nucleolar RNA SNORA1563559727935597405Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor63571776435723590Rat
9410455Rps16-ps1ribosomal protein S16, pseudogene 163573100135731699Rat
619903Ddx1DEAD-box helicase 163599646936027340Rat
1585140NbasNBAS subunit of NRZ tethering complex63604835736353206Rat
11488723LOC108351202ferritin light chain 1 pseudogene63614641136147701Rat
41070163LOC120103514uncharacterized LOC12010351463621250936215589Rat
41388044LOC120103515uncharacterized LOC12010351563638231536391016Rat
1585125Morf4l1-ps9mortality factor 4 like 1, pseudogene 963658836636589355Rat
11498460LOC108351358uncharacterized LOC10835135863666987836810264Rat
1305779Lratd1LRAT domain containing 163691696936922143Rat
2319366Fbxw2-ps2F-box and WD repeat domain containing 2, pseudogene 263721253737214363Rat
7715436LOC102555226uncharacterized LOC10255522663741567537435927Rat
11498435LOC108351205uncharacterized LOC10835120563750642637610011Rat
41258020LOC120103517uncharacterized LOC12010351763761035837694325Rat
11377656LOC108351206uncharacterized LOC10835120663764487437720487Rat
1584006Eif3b-ps1eukaryotic translation initiation factor 3, subunit B, pseudogene 163785599437858259Rat
41075541Trnaa-ggc4transfer RNA alanine (anticodon GGC) 463795137037951450Rat
1583858Tdg-ps2thymine-DNA glycosylase, pseudogene 263805055838051737Rat
7515781LOC102556604uncharacterized LOC10255660463823057338279335Rat
7557098LOC102555705uncharacterized LOC10255570563832785338348255Rat
41343564LOC120103518uncharacterized LOC12010351863851558538519218Rat
1564451Trib2tribbles pseudokinase 263854597138570349Rat
7657676LOC102555864uncharacterized LOC10255586463872202838728847Rat
7500641LOC102555927uncharacterized LOC10255592763877891638822800Rat
2321713Rpl11-ps2ribosomal protein L11, pseudogene 263892067338921200Rat
40932412LOC120093236uncharacterized LOC12009323663918573239186930Rat
7501955LOC102550954uncharacterized LOC10255095463925363339290633Rat
1307646Lpin1lipin 163930919839417034Rat
70962Ntsr2neurotensin receptor 263942429739431015Rat
1564091Greb1growth regulating estrogen receptor binding 163944052239562364Rat
631412E2f6E2F transcription factor 663959222439608685Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 263967911639774033Rat
1306818Slc66a3solute carrier family 66 member 363977480139786554Rat
1582838Cimip5ciliary microtubule inner protein 563979241639797072Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 163996230139964979Rat
628688Pdia6protein disulfide isomerase family A, member 664006298040080223Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264008054540144199Rat
1359447Nol10nucleolar protein 1064014421740225353Rat
1561890Cfdp1l1craniofacial development protein 1 like 164025471740255884Rat
1597342Psme3-ps2proteasome activator subunit 3, pseudogene 264027018740271205Rat
3227Odc1ornithine decarboxylase 164032983140336444Rat
41218949Snora80bsmall nucleolar RNA, H/ACA box 80B64033114340331276Rat
41299246Trnav-aac13transfer RNA valine (anticodon AAC) 1364041593840416018Rat
41314300Ptma-ps3prothymosin alpha, pseudogene 364042091940423313Rat
40979901LOC12009323860S ribosomal protein L35-like64042359440425165Rat
708375Hpcal1hippocalcin-like 164047820640584721Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264065820140821017Rat
41082662LOC120093281U6 spliceosomal RNA64072761140727717Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164082069340836074Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364083612140864129Rat
41210651LOC120093425small nucleolar RNA SNORA2164083772240837850Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164086553040872747Rat
620404Adam17ADAM metallopeptidase domain 1764087293640920700Rat
41040147LOC120093315U6 spliceosomal RNA64090153440901635Rat
41197514LOC1200932755S ribosomal RNA64092292240923040Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64093571440966240Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64111698041194593Rat
7731406Rbm34-ps1RNA binding motif protein 34, pseudogene 164115112341153682Rat
1305735Grhl1grainyhead-like transcription factor 164120732541257516Rat
1306646Klf11KLF transcription factor 1164128569941297548Rat
1596023Cys1cystin 164130083641318071Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264133985841346774Rat
41153839LOC120093240uncharacterized LOC12009324064137743241380036Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264147113541597599Rat
619949Kidins220kinase D-interacting substrate 22064161820741706990Rat
41007282LOC120093241ubiquinol-cytochrome-c reductase complex assembly factor 3-like64172531141725677Rat
2859Id2inhibitor of DNA binding 264174055641742393Rat
7526561LOC102553989uncharacterized LOC10255398964182949241855070Rat
9103871LOC103692605uncharacterized LOC10369260564190566341914487Rat
9329158Ndufa5-ps2NADH:ubiquinone oxidoreductase subunit A5, pseudogene 264193110841931448Rat
7629645LOC102554202uncharacterized LOC10255420264194571541969352Rat
7536096LOC102557053uncharacterized LOC10255705364204746342118475Rat
41346264LOC120093242uncharacterized LOC12009324264226566942283040Rat
41088761LOC120093243uncharacterized LOC12009324364240591042411124Rat
1583774Phgdh-ps6phosphoglycerate dehydrogenase, pseudogene 664273609142737499Rat
1561737Rnf144aring finger protein 144A64289976743019769Rat
620495Rsad2radical S-adenosyl methionine domain containing 264304651443059737Rat
1305881Cmpk2cytidine/uridine monophosphate kinase 264307370643085183Rat
11370295LOC108351213uncharacterized LOC10835121364322425643252067Rat
6501114Pgam1-ps2phosphoglycerate mutase 1, pseudogene 264346571843466451Rat
11384778LOC108351214uncharacterized LOC10835121464368784743709249Rat
2318102Silc1sciatic injury induced lincRNA upregulator of SOX1164380570943825284Rat
69351Sox11SRY-box transcription factor 1164400833344010354Rat
2324519Ube2e1-ps1ubiquitin-conjugating enzyme E2E 1, pseudogene 164412500944125650Rat
41387415LOC120093459small nucleolar RNA SNORA1764430255644302686Rat
9422695LOC103692606uncharacterized LOC10369260664449376444498160Rat
11407553LOC108351362uncharacterized LOC10835136264456576444570039Rat
41264357LOC120093466small nucleolar RNA SNORA1764468879444688925Rat
41262445LOC120093439small nucleolar RNA SNORA1764494854344948677Rat
41119779LOC120093290U6 spliceosomal RNA64499053644990642Rat
2322612Npm1-ps19nucleophosmin 1, pseudogene 1964507348145074670Rat
1564913Akr1b1-ps1aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 164508971745090928Rat
1559651Dcdc2cdoublecortin domain containing 2C64510383845179040Rat
621804Allcallantoicase64517918145214275Rat
41178284LOC120093293U6 spliceosomal RNA64520744745207550Rat
1309678Colec11collectin sub-family member 1164522397445256640Rat
61907Rps7ribosomal protein S764526620045271064Rat
1309012Rnaseh1ribonuclease H164528284945292258Rat
727828Adi1acireductone dioxygenase 164530688545313847Rat
1566054Trappc12trafficking protein particle complex subunit 1264532149645386967Rat
1305817Eipr1EARP complex and GARP complex interacting protein 164538845145502089Rat
7747059LOC102555103uncharacterized LOC10255510364580665345830237Rat
7502861LOC102555048uncharacterized LOC10255504864583490845923094Rat
7690279LOC102554981uncharacterized LOC10255498164609135246111068Rat
620550Myt1lmyelin transcription factor 1-like64616474246564234Rat
1560694Pxdnperoxidasin64658074946658345Rat
3900Tpothyroid peroxidase64669840246768199Rat
1311276Sntg2syntrophin, gamma 264680189347003390Rat
1596936Prdx1-ps5peroxiredoxin 1, pseudogene 564706871847072828Rat
41273085LOC120103519uncharacterized LOC12010351964718482147207414Rat
1359389Tmem18transmembrane protein 1864720684547214294Rat
1587117Alkal2ALK and LTK ligand 264749564547505235Rat
2020Acp1acid phosphatase 164750638047522021Rat
1306440Sh3yl1SH3 and SYLF domain containing 164752209847565858Rat
1585983Hirip3-ps1HIRA interacting protein 3, pseudogene 164757559047578182Rat
40977559LOC120093438small nucleolar RNA SNORA1764762512447625256Rat
1564713Fam110cfamily with sequence similarity 110, member C64763846647644723Rat
41147221Lamb2-ps1laminin subunit beta 2, pseudogene 164769733747811453Rat
9288946LOC103692609serine palmitoyltransferase small subunit A pseudogene64781087547812735Rat
1306311Lamb1laminin subunit beta 164783549247902585Rat
735073Dlddihydrolipoamide dehydrogenase64790415347924814Rat
620623Slc26a3solute carrier family 26 member 364802389248064829Rat
1310703Cbll1Cbl proto-oncogene like 164807119048086174Rat
7499548LOC102555378uncharacterized LOC10255537864808541548115642Rat
3293Slc26a4solute carrier family 26 member 464810757548153762Rat
11492151LOC108351220uncharacterized LOC10835122064816873748174227Rat
1359431Bcap29B-cell receptor-associated protein 2964818270248222698Rat
1311445Dus4ldihydrouridine synthase 4-like64822811148242553Rat
1563296Cog5component of oligomeric golgi complex 564824247048545185Rat
1310848Gpr22G protein-coupled receptor 2264830961948317864Rat
620444Hbp1HMG-box transcription factor 164852963348555775Rat
3394Prkar2bprotein kinase cAMP-dependent type II regulatory subunit beta64856365948653933Rat
41021534LOC120093368U1 spliceosomal RNA64866660248666749Rat
1306468Pik3cgphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma64876677848802098Rat
41158901LOC120103521uncharacterized LOC12010352164878218648787040Rat
2320310Calm2-ps3calmodulin 2, pseudogene 364887518648877852Rat
41344174LOC120093495U4 spliceosomal RNA64895729148957480Rat
1560812Ccdc71lcoiled-coil domain containing 71-like64896002048964112Rat
2321896Nxt2-ps1nuclear transport factor 2-like export factor 2, pseudogene 164901409149014679Rat
1598099Car13-ps2carbonic anhydrase 13, pseudogene 264939618149396963Rat
40944820LOC120093433small nucleolar RNA SNORA4864941353149413674Rat
631365Namptnicotinamide phosphoribosyltransferase64942531649462109Rat
41143542Metrnl-ps1meteorin-like, glial cell differentiation regulator, pseudogene 164954253649543619Rat
41201218Ccdc69-ps1coiled-coil domain containing 69, pseudogene 164954363749544171Rat
41060377Hexim2-ps1HEXIM P-TEFb complex subunit 2, pseudogene 164954466449545948Rat
7542438LOC102547473uncharacterized LOC10254747364955278549565067Rat
1359569Sypl1synaptophysin-like 164956511149585205Rat
41266620LOC120093480U6atac minor spliceosomal RNA64960520949605327Rat
1591286Cdhr3cadherin-related family member 364964183349702016Rat
7719070LOC102547703uncharacterized LOC10254770364972940349759830Rat
1305730Atxn7l1ataxin 7-like 164975987649982323Rat
7563724LOC102549100uncharacterized LOC10254910064990353049911102Rat
1307943Efcab10EF-hand calcium binding domain 1065000447950011398Rat
11378331LOC108351223uncharacterized LOC10835122365001440650029376Rat
1307824Polr1fRNA polymerase I subunit F65005328950070514Rat
41186807LOC120093447small nucleolar RNA SNORA1765009137850091506Rat
1595482Tomm70-ps1translocase of outer mitochondrial membrane 70, pseudogene 165012491150127154Rat
6486238Rpsa-ps12ribosomal protein SA, pseudogene 1265014805050149675Rat
41134593LOC120093452small nucleolar RNA SNORA1765017897850179105Rat
1595449Rps20-ps6ribosomal protein S20, pseudogene 665063628350636717Rat
1311812Ferd3lFer3-like bHLH transcription factor65064537950646268Rat
41169746Pin4-ps3peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 365064794850648344Rat
621455Twist1twist family bHLH transcription factor 165067491050676904Rat
41104462LOC120093244uncharacterized LOC12009324465074508650754911Rat
1594139Dppa4-ps4developmental pluripotency-associated 4, pseudogene 465074524350745986Rat
1310748Hdac9histone deacetylase 965076207451624311Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11141D6Arb1230364865776548658068Ratregion
34072D6Mgh717764579008845790265Ratregion
37222D6Rat8221964298481642985033Ratregion
37392D6Rat9323064343264943432879Ratregion
35235D6Rat2913063813689338137023Ratregion
35338D6Rat3116264234207842342232Ratregion
35390D6Rat3614063509870935098849Ratregion
35396D6Rat3517063443413734434305Ratregion
37046D6Rat5212163541471835414835Ratregion
37662D6Rat9224563967147639671747Ratregion
37746D6Rat9619963855205338552278Ratregion
36534D6Rat3217264164972641649891Ratregion
36560D6Rat3415063971455039714722Ratregion
36787D6Rat3716763569161835691785Ratregion
35943D6Rat3013264737056447370696Ratregion
39848D6Rat14315863686871236868865Ratregion
39924D6Rat14120163875148238751689Ratregion
39972D6Rat13222165081844550818672Ratregion
38220D6Rat6721364255907842559313Ratregion
38758D6Rat8313664025737440257518Ratregion
40240D6Rat13313764887386348873992Ratregion
38930D6Rat6124564257507842575327Ratregion
39450D6Rat13824964054393340544194Ratregion
42779D6Rat22824563512897435129218Ratregion
42781D6Rat20720964156247541562698Ratregion
42782D6Rat20620564747401347474227Ratregion
41244D6Rat13515164780750247807653Ratregion
40770D6Rat13923163963395539634300Ratregion
40770D6Rat13923163963405339634300Ratregion
41064D6Rat13419964770999047710185Ratregion
41606D6Rat14416763521491435215081Ratregion
41606D6Rat14416763521491435215248Ratregion
41608D6Rat14227364191223241912500Ratregion
41668D6Rat17022864554687545547114Ratregion
44074D6Got5413764236768142367818Ratregion
44075D6Got5822064343660243436822Ratregion
44076D6Got5517364513215845132331Ratregion
44077D6Got6029664905541549055711Ratregion
44078D6Got6619664982631849826514Ratregion
44079D6Got6423765019586850196103Ratregion
44080D6Got618664931999349320076Ratregion
44081D6Got6318165065626050656438Ratregion
44082D6Got6513565081852050818655Ratregion
44059D6Got3825763562070035620954Ratregion
44061D6Got3924763747429237474539Ratregion
44063D6Got3421863537535635375576Ratregion
44064D6Got3313863562072635620864Ratregion
44065D6Got4215063869622538696375Ratregion
44066D6Got4822663999081339991039Ratregion
44067D6Got4911864058269140582809Ratregion
44068D6Got5016164083215440832315Ratregion
44069D6Got5220864098285640983064Ratregion
44070D6Got19923264107509741075329Ratregion
44073D6Got5729464413207044132364Ratregion
60536D6Got3712963688572536885854Ratregion
60539D6Got4320163850625738506458Ratregion
60540D6Got4423763952980639530031Ratregion
60542D6Got4620463957175439571957Ratregion
60544D6Got5124264174835841748602Ratregion
60545D6Got5624064229693942297179Ratregion
60546D6Got5919964234734642347545Ratregion
60429D4Got14714664995905149959119Ratregion
62501D6Uia335064485714644857495Ratregion
67229D6Arb2124263594302235943264Ratregion
67277D6Arb836064033503740335394Ratregion
1631403D6Got31618364456250144562684Ratregion
1629633D6Got30911064236533342365443Ratregion
1639193D6Wox247564033516540335238Ratregion
1639610D6Got30325764337873943378996Ratregion
8693214rs10751130064207823442078234Ratregion
5036187RH12584224565012497850125223Ratregion
5038836RH12736018664008066640081020Ratregion
7206578UniSTS:5471496064400887344008933Ratregion
5036504Sox1173464400754844008282Ratregion
5037143RH7069815164087406240874213Ratregion
5035552MYCN72463571780735718531Ratregion
5035677HSCZSD08220864656401446564222Ratregion
5034043RH141145064289992542900140Ratregion
5028937RH14289010063691697036917070Ratregion
5028985RH14307530064082545940825759Ratregion
5034379STS-N3438912164807132948071450Ratregion
5029197RH14388517864129711441297292Ratregion
5026690RH13316321864039080040391018Ratregion
5029395RH14462817164532284645323017Ratregion
5032054AU04682410163910106339101164Ratregion
5029427Twist34065067541550675755Ratregion
5029581BE10124617264308375943083931Ratregion
5029669BF38684316465095367250953836Ratregion
5035458BQ19434619164529916545299356Ratregion
5029979BF38837621364079234940792562Ratregion
5030043AW53115421063976668839766898Ratregion
5035196BM39055917063944215639442326Ratregion
5027445AW31951711663854610738546223Ratregion
5027447AV3758749264896138948961481Ratregion
5030217AW53235417264461426944614441Ratregion
5032981RH13719220863515615135156359Ratregion
5025098AW82363313263977370139773833Ratregion
5025100RH12680130964784877147849080Ratregion
5025334RH12791820864790481347905021Ratregion
5025386RH12811520864974440949744617Ratregion
5028009M6364918865067627550676463Ratregion
5030619BE10719317764295536642955543Ratregion
5025520RH12863718164087249040872671Ratregion
5025684RH12926015064058452140584671Ratregion
5025742RH12948420364810767048107873Ratregion
5033773RH14006819664400880744009003Ratregion
5028537AF08519216164058401340584174Ratregion
5028539AI31445812664945995849460084Ratregion
5031091BF41267918164831595448316135Ratregion
5056471RH14439715164831075148310902Ratregion
5051525AI4492608464082227840822362Ratregion
5051527AI25542814264174053941740681Ratregion
5054035RH14299321264105259141052803Ratregion
5057368Nato3-pending45365064543650645889Ratregion
5052121RH9485211364174057841740693Ratregion
5055193RH14366011164791131247911423Ratregion
5055295RH14371913764095918340959320Ratregion
5055313RH14372916664854707448547240Ratregion
5055977RH14411213664379673743796873Ratregion
5056301RH14429917964379577943795958Ratregion
5056309RH14430424464957109849571342Ratregion
5056123RH14419614564380678443806929Ratregion
5056753RH14456017364853192848532101Ratregion
5059832BI28558114863484275834842904Ratregion
5052901RH14233919764807140148071598Ratregion
5058238BF38688016863959363139593799Ratregion
5059276BF38792216664517925645179422Ratregion
5049912RH13375318964523971145239900Ratregion
7193124MYCN44663572313735723584Ratregion
5050188RH13391220864895773848957946Ratregion
5054297RH14314326463973360039733864Ratregion
5051687RH9460015864033213340332291Ratregion
5050820RH13427718764307388143074074Ratregion
5044182RH13045618663633047936330665Ratregion
5044182RH13045618663633047936330665Ratregion
5043268RH12992818464119427641194460Ratregion
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5090147AU04957719064236760942367799Ratregion
5084306AA84895021264964189149642104Ratregion
5087546PMC305683P269564174163441742329Ratregion
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5502943Tomm70a90765012542850126335Ratregion
5504776PMC99801P125564033232740332582Ratregion
5505357Slc26a415464813580648135960Ratregion
5505448Id212364174494041745063Ratregion
5504965Tpo148464673948946740973Ratregion
5505169Trib228163854610638546387Ratregion
5506086Myt1l064656094346561525Ratregion
5499627MARC_4117-4118:991938388:111164854418148544292Ratregion
5500113UniSTS:23682813764789941447899551Ratregion
5502573RH12541010964007523040076005Ratregion
5500442fc63b12.x1064067795040678279Ratregion
5500442fc63b12.x1064067797040678279Ratregion
5503778UniSTS:47067645764707231447072784Ratregion
5501580RH6999213164854419848544329Ratregion
5501786MARC_12189-12190:1004712897:113263484325334843385Ratregion
5505540D2S171152764769210747693634Ratregion
5501820MARC_13945-13946:1007583817:174764975993649760683Ratregion
Position Markers

Flank 1: (rs107423234)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2634,323,357 - 34,323,357RGD
Rnor_6.0634,257,766 - 34,257,766RGD
Celera633,704,443 - 33,704,443RGD
Peak: (rs107511300)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2642,078,234 - 42,078,234RGD
Rnor_6.0644,696,315 - 44,696,315RGD
Celera641,355,021 - 41,355,021RGD
Flank 2: (rs66395656)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,121,479 - 51,121,479RGD
Rnor_6.0653,855,198 - 53,855,198RGD
Celera650,287,709 - 50,287,709RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general measurement method: rats were given 10% EtOH for 1 week, then for 7 weeks they were given 2-bottle choice of water and EtOH followed by 2 week period of only water (alcohol deprivation); then 2 weeks of 2-bottle choice of water and EtOH followed by second 2 weeks of alcohol deprivation then 2 weeks of 2-bottle choice of water and EtOH followed by third 2 weeks of alcohol deprivation and 1 week of 2-bottle choice of water and EtOH 8663441
qtl_general water and alcohol consumption were measured by weight 8663441
qtl_general alcohol deprivation effect (ADE) was calculated as the amount of alcohol consumed (g/kg) during 24 hrs after deprivation minus average daily amount consumed in the week before deprivation period 8663441
qtl_general this QTL correlates to week 2 pre-ADE alcohol consumption 8663441
qtl_general software used: ANOVA 8663441
qtl_general number of animals used: 70-100 days old males from HXB/BXH RI strains and the parental BN-Lx/CubPrin, SHR/OlaIpcvPrin 8663441
qtl_general spans 43.4-63.4 Mb 8663441