Mcs31 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs31 (Mammary carcinoma susceptibility QTL 31) Rattus norvegicus

Symbol: Mcs31
Name: Mammary carcinoma susceptibility QTL 31
RGD ID: 7794784
Previously known as: Mts-1; Chr9-Mts-1
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor incidence/prevalence measurement   (CMO:0000946)    
LOD Score: 2.98
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2977,813,894 - 111,552,878RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0990,024,661 - 119,983,851RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0989,765,913 - 119,437,586RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4975,633,467 - 110,864,247RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Prlh is a candidate Gene for Mcs31

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SR/JrHsd  (IEA)
SS/JrHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Multiple susceptibility loci for radiation-induced mammary tumorigenesis in F2-intercross rats. Herrera VL, etal., PLoS One. 2013;8(8):e72143. doi: 10.1371/journal.pone.0072143. eCollection 2013.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
61806Ecel1endothelin converting enzyme-like 198781951687829154Rat
3646Ccl20C-C motif chemokine ligand 2098438903184391629Rat
619975Hdac1lhistone deacetylase 1-like98045261580454615Rat
619798Ppp4r1protein phosphatase 4, regulatory subunit 19105391271105450626Rat
71089Epb41l3erythrocyte membrane protein band 4.1-like 39109056178109260607Rat
61801Htr2b5-hydroxytryptamine receptor 2B98673579386756638Rat
61803VapaVAMP associated protein A9105177904105208400Rat
70552Acsl3acyl-CoA synthetase long-chain family member 398011516480164636Rat
3527Rab12RAB12, member RAS oncogene family9106480301106506895Rat
61829Ptmaprothymosin alpha98717625187180333Rat
61853Gpc1glypican 199339623493424047Rat
61945Per2period circadian regulator 299200728992049551Rat
3252Pampeptidylglycine alpha-amidating monooxygenase99799858198271966Rat
3619SagS-antigen visual arrestin98846779788508821Rat
2914Inpp5dinositol polyphosphate-5-phosphatase D98828768088392748Rat
2073Agxtalanine--glyoxylate aminotransferase99367538493685337Rat
70984BokBCL2 family apoptosis regulator BOK99422349394234476Rat
620056Septin2septin 299401814194051386Rat
3748Serpine2serpin family E member 298112474681188866Rat
2352Chrndcholinergic receptor nicotinic delta subunit98786241787870833Rat
2354Chrngcholinergic receptor nicotinic gamma subunit98787808587884193Rat
3038Man2a1mannosidase, alpha, class 2A, member 19104252001104408349Rat
2922Irs1insulin receptor substrate 198355296483605797Rat
620949Ugt1a6UDP glucuronosyltransferase family 1 member A698874721388808465Rat
708431Slco6c1solute carrier organic anion transporter family, member 6c199750002897580776Rat
619979Hdac4histone deacetylase 499250346792750164Rat
631436Myom1myomesin 19110916156111039344Rat
708474Ugt1a8UDP glucuronosyltransferase family 1 member A898872709488808465Rat
621286Twist2twist family bHLH transcription factor 299237474092419222Rat
620601Ackr3atypical chemokine receptor 399079968290811246Rat
620219Sh3bp4SH3-domain binding protein 498966015689739163Rat
708488Spp2secreted phosphoprotein 298900685889026676Rat
620128IlkapILK associated serine/threonine phosphatase99196644091988791Rat
620950Ugt1a7cUDP glucuronosyltransferase 1 family, polypeptide A7C98873957788808465Rat
621661Kcnj13potassium inwardly-rectifying channel, subfamily J, member 1398806300388071112Rat
621669Psmd1proteasome 26S subunit, non-ATPase 198670971486785213Rat
628712Zbtb14zinc finger and BTB domain containing 149109333440109338646Rat
620776Ptprmprotein tyrosine phosphatase, receptor type, M9106639573107343698Rat
628855Myl12bmyosin light chain 12B9110873855110888187Rat
619867Nmur1neuromedin U receptor 198703323187038070Rat
621134Ralbp1ralA binding protein 19105456425105493235Rat
727968Ndufa10NADH:ubiquinone oxidoreductase subunit A1099300703493041825Rat
620273Pja2praja ring finger ubiquitin ligase 29103956678104006763Rat
1303210Farsbphenylalanyl-tRNA synthetase subunit beta97988785279947082Rat
620962Hdlbphigh density lipoprotein binding protein99394809994018040Rat
3153Nclnucleolin98699958887008112Rat
621845St8sia4ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 499599013196084661Rat
3626Scg2secretogranin II98080307480808646Rat
621733Ndufv2NADH:ubiquinone oxidoreductase core subunit V29105690454105710669Rat
71085Col4a3collagen type IV alpha 3 chain98387584984004955Rat
69354Capn10calpain 1099349813293510494Rat
3164Neu2neuraminidase 298821849488267356Rat
620762Trpm8transient receptor potential cation channel, subfamily M, member 898889703988990167Rat
620431Pax3paired box 397956745579664042Rat
1304588Lpin2lipin 29111083378111158193Rat
628598Rab31RAB31, member RAS oncogene family9105246712105382973Rat
61870Ramp1receptor activity modifying protein 199176548191816152Rat
620223Dlgap1DLG associated protein 19109857500110726817Rat
1307234Smchd1structural maintenance of chromosomes flexible hinge domain containing 19111243445111387272Rat
1305846HjurpHolliday junction recognition protein98885337988867730Rat
1306918Cops7bCOP9 signalosome subunit 7B98723813287263967Rat
620850Nppcnatriuretic peptide C98732005187324251Rat
1305615Armc9armadillo repeat containing 998680279186928611Rat
1306390Cab39calcium binding protein 3998646309586524545Rat
1304996Kif1akinesin family member 1A99356303393647412Rat
1306607Trip12thyroid hormone receptor interactor 1298591669186043312Rat
1307449Gin1gypsy retrotransposon integrase 199829359698315155Rat
1306355Sp140SP140 nuclear body protein98622447286274724Rat
1306273FerFER tyrosine kinase9103520452103827364Rat
1306204Pde6dphosphodiesterase 6D98719298987237979Rat
1307976D2hgdhD-2-hydroxyglutarate dehydrogenase99435055594368384Rat
1306451Mettl4methyltransferase 4, N6-adenosine9111440976111523871Rat
1309973Fam174afamily with sequence similarity 174, member A99574281595761083Rat
708465Otosotospiralin99321694893220614Rat
1307608Ube2fubiquitin-conjugating enzyme E2F (putative)99184597591881145Rat
2099Alpialkaline phosphatase, intestinal98777341187776877Rat
620391Efna5ephrin A59102316753102595480Rat
727833Ugt1a9-psUDP glycosyltransferase 1 family, polypeptide A9, pseudogene98871318488714042Rat
1310118Ankrd12ankyrin repeat domain 129105583273105687957Rat
1308003Farp2FERM, ARH/RhoGEF and pleckstrin domain protein 299405365094161982Rat
1305343Emilin2elastin microfibril interfacer 29111160708111220463Rat
1307207Lama1laminin subunit alpha 19107692770107816847Rat
1307790Eif4e2eukaryotic translation initiation factor 4E family member 298788612687914470Rat
1305996Wdfy1WD repeat and FYVE domain containing 198103485281092823Rat
3935Ugt1a1UDP glucuronosyltransferase family 1 member A198880134488808465Rat
727809Stk25serine/threonine kinase 2599416183494174095Rat
1306477Rhbdd1rhomboid domain containing 198363003783748690Rat
620278Slco6b1solute carrier organic anion transporter family member 6B199726665597347336Rat
1308624Neu4neuraminidase 499439692094402576Rat
1310173Sp110SP110 nuclear body protein98620050386225355Rat
1333294Or9s23bolfactory receptor family 9 subfamily S member 23B99311732893118299Rat
1302987Ano7anoctamin 799391752493945323Rat
1333345Or9s23olfactory receptor family 9 subfamily S member 2399313148393132454Rat
1333489Or9s15olfactory receptor family 9 subfamily S member 1599314957393150544Rat
1309556Mrpl44mitochondrial ribosomal protein L4498110665881111709Rat
1359385Dnerdelta/notch-like EGF repeat containing98558698585902461Rat
1309773Fbxl17F-box and leucine-rich repeat protein 179102780573103206978Rat
621866Gbx2gastrulation brain homeobox 299050963390512212Rat
1560587Epha4Eph receptor A497881546078958139Rat
1310830Csprscomponent of Sp100-rs98616578386174596Rat
1310850Asb18ankyrin repeat and SOCS box-containing 1899053135090595953Rat
621650Akp3alkaline phosphatase 3, intestine, not Mn requiring98780468087808715Rat
1311644Mogat1monoacylglycerol O-acyltransferase 197998096379988513Rat
1311772Ap1s3adaptor related protein complex 1 subunit sigma 398095040281009889Rat
1359388Slco6d1solute carrier organic anion transporter family, member 6d199758309397739994Rat
1310760Asb1ankyrin repeat and SOCS box-containing 199212033292140790Rat
1312047Hes6hes family bHLH transcription factor 699200184992003562Rat
1333615Or9s27olfactory receptor family 9 subfamily S member 2799313663293146531Rat
1308319Mtcl1microtubule crosslinking factor 19106305282106441782Rat
1307908Ing5inhibitor of growth family, member 599432654994343392Rat
1310196Washc1WASH complex subunit 19105722779105830836Rat
1311658Pdcd1programmed cell death 199441878694431945Rat
1311447Snorcsecondary ossification center associated regulator of chondrocyte maturation98814051088145527Rat
1549771Ugt1a9UDP glucuronosyltransferase family 1 member A998869698188808465Rat
1310631Atg16l1autophagy related 16-like 198842073788457530Rat
1310902Nudt12nudix hydrolase 1299874162798755039Rat
1309252Traf3ip1TRAF3 interacting protein 199207362292110427Rat
1309055Ngefneuronal guanine nucleotide exchange factor98814695688244454Rat
1308169Ppp1r7protein phosphatase 1, regulatory subunit 799388606893911198Rat
1311413Slc19a3solute carrier family 19 member 398427572284299368Rat
1309404Gpr35G protein-coupled receptor 3599352716593539573Rat
1309613Usp40ubiquitin specific peptidase 4098860792088678940Rat
1309614Dtymkdeoxythymidylate kinase99431555294324386Rat
1308190Cul3cullin 398159264181670428Rat
1305311Iqca1IQ motif containing with AAA domain 199062673590742563Rat
1308164Spata3spermatogenesis associated 398666035286672272Rat
1309537Myl12amyosin light chain 12A9110891970110899655Rat
1310154Ndc80NDC80 kinetochore complex component9111407191111440921Rat
1308704Col6a3collagen type VI alpha 3 chain99136157891439434Rat
1309819Chchd2l3coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 399450043994501110Rat
1310230Mffmitochondrial fission factor98400779884036039Rat
1309244Agap1ArfGAP with GTPase domain, ankyrin repeat and PH domain 199003972090475196Rat
1306675Ddx11DEAD/H-box helicase 119105833234105862844Rat
1309503Itm2cintegral membrane protein 2C98654592786559745Rat
1306139Rnf11l2ring finger protein 11-like 298218177982183568Rat
1311404Cops8COP9 signalosome subunit 899120742791217258Rat
1305355Col4a4collagen type IV alpha 4 chain98383317383875436Rat
1310580B3gnt7UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 798695622086960171Rat
1309664Atg4bautophagy related 4B, cysteine peptidase99428241794314109Rat
1309675Slc16a14solute carrier family 16, member 1498611006686137546Rat
1306146PaskPAS domain containing serine/threonine kinase99384427593886036Rat
1307870Fbxo36F-box protein 3698604252286107220Rat
1309644Klhl30kelch-like family member 3099194247591952756Rat
1565739Sgpp2sphingosine-1-phosphate phosphatase 297976265879884665Rat
1561436Daw1dynein assembly factor with WD repeats 198443555284472632Rat
1561963Dock10dedicator of cytokinesis 1098184359982101540Rat
1561755Srp14l1signal recognition particle 14 like 198664582986649077Rat
1562440Mterf4mitochondrial transcription termination factor 499383416293838838Rat
1563955Prss56serine protease 5698784280687859978Rat
1311215Twsg1twisted gastrulation BMP signaling modulator 19105533116105567460Rat
1563309Dgkddiacylglycerol kinase, delta98851668688607349Rat
1562432Espnlespin-like99191203891936803Rat
1559548Tmem232transmembrane protein 2329104887669105115737Rat
1566037Rpsa-ps11ribosomal protein SA, pseudogene 1198091006880912886Rat
1563917A630001G21RiklRIKEN cDNA A630001G21 gene like98638177786405385Rat
1563832Lrrc30leucine rich repeat containing 309107624479107626147Rat
1565687Mroh2amaestro heat-like repeat family member 2A98881451588862346Rat
1563692Mab21l4mab-21 like 499369045593701267Rat
1560041Agfg1ArfGAP with FG repeats 198412484584182615Rat
1333070Or9s14olfactory receptor family 9 subfamily S member 1499317336093174328Rat
1303048Slco4c1solute carrier organic anion transporter family, member 4C199717749797229161Rat
1302957Kcne4potassium voltage-gated channel subfamily E regulatory subunit 498024342980251533Rat
1359251Txndc2thioredoxin domain containing 29105230575105235131Rat
1560925Pdzph1PDZ and pleckstrin homology domains 199859122298729409Rat
1332746Or6b2olfactory receptor family 6 subfamily B member 299304847593049413Rat
1359473Thap4THAP domain containing 499424258194282312Rat
1333848Or9s13olfactory receptor family 9 subfamily S member 1399318459493194689Rat
1334135Or5ak27-ps1olfactory receptor family 5 subfamily AK member 27, pseudogene 198505117685051964Rat
1334141Or6b3olfactory receptor family 6 subfamily B member 399307003193070969Rat
1549741Ugt1a2UDP glucuronosyltransferase 1 family, polypeptide A298879121688808465Rat
1310517Tgif1TGFB-induced factor homeobox 19110748094110757714Rat
1559955Rps17l2ribosomal protein S17 like 299909327299093890Rat
1549728Ugt1a3UDP glycosyltransferase 1 family, polypeptide A398878032888808465Rat
1310733Mlphmelanophilin99150741091542984Rat
1311951SphkapSPHK1 interactor, AKAP domain containing98450938384657582Rat
1333485Or9s14bolfactory receptor family 9 subfamily S member 14B99316024893161207Rat
628634Prlhprolactin releasing hormone99154312891549022Rat
1562136Macirmacrophage immunometabolism regulator99842076098440818Rat
1559828Gpr55G protein-coupled receptor 5598658490686640601Rat
1334214Or6b2bolfactory receptor family 6 subfamily B member 2B99305674093057675Rat
1333005Olr1348-psolfactory receptor pseudogene 134899313324693133449Rat
1560168Dis3l2DIS3-like 3'-5' exoribonuclease 298735540987736616Rat
1560766Pid1phosphotyrosine interaction domain containing 198528433585503035Rat
1359548Lrrfip1LRR binding FLII interacting protein 199159203291720250Rat
1359550Sp100SP100 nuclear antigen98631099086377036Rat
1559565Efhd1EF-hand domain family, member D198793825987984917Rat
1562478Rab17RAB17, member RAS oncogene family99155292491566759Rat
1583637Rpl21-ps1ribosomal protein L21, pseudogene 198763513387635684Rat
1587524L3mbtl4L3MBTL histone methyl-lysine binding protein 49108295004108747879Rat
1566074Rbm44RNA binding motif protein 4499173115391756783Rat
1566079Sned1sushi, nidogen and EGF-like domains 199377408793834003Rat
1565945Rps10-ps8ribosomal protein S10, pseudogene 898642216286422790Rat
1564629Tex44testis expressed 4498707568487077102Rat
1561734Tmem200ctransmembrane protein 200C9108806063108811901Rat
1559882Arhgap28Rho GTPase activating protein 289107832584107998030Rat
1562727Aqp12aaquaporin 12A99355452793560011Rat
1566007Smokwl4sperm motility kinase W like 49105957452105971785Rat
1565100Alpgalkaline phosphatase, germ cell98774872187761500Rat
1564536RGD1564536similar to Cofilin, non-muscle isoform (Cofilin-1)97843364778434301Rat
1359514Sclyselenocysteine lyase99189026991910947Rat
1593854Gal3st2galactose-3-O-sulfotransferase 299438245694387990Rat
1590765Ppip5k2diphosphoinositol pentakisphosphate kinase 299831522098394537Rat
1593789Noc3l-ps2NOC3-like DNA replication regulator, pseudogene 299461937094650913Rat
1588633Tm4sf20transmembrane 4 L six family member 2098403871584052615Rat
1591029Themis3thymocyte selection associated family member 39106543112106580780Rat
1589680Spin2l-ps1spindlin family member 2 like, pseudogene 19106129631106137205Rat
1589682Tpt1-ps6tumor protein, translationally-controlled 1 pseudogene 699787450697875077Rat
1589685Arl4cADP ribosylation factor like GTPase 4C98930033589303770Rat
1592977Ppid-ps21peptidylprolyl isomerase D, pseudogene 2198889168288893091Rat
1584688Erfeerythroferrone99195697191964846Rat
1589866Fam124bfamily with sequence similarity 124 member B98151301881533621Rat
1585470Bmpr1a-ps1bone morphogenetic protein receptor type 1A, pseudogene 19100602229100605006Rat
1583689Ugt1a5UDP glucuronosyltransferase family 1 member A598876225088808465Rat
1597166Rpl35l4ribosomal protein L35 like 49105925950105926646Rat
1598338Pkm-ps10pyruvate kinase M1/2, pseudogene 1099182347291834122Rat
1595220Dusp28dual specificity phosphatase 2899347283293474207Rat
1595229Ankmy1ankyrin repeat and MYND domain containing 199342366493476651Rat
1592616Ahcy-ps2adenosylhomocysteinase, pseudogene 299489069494892294Rat
1595210Rnpepl1arginyl aminopeptidase like 199347660093486331Rat
1590183Slco6c1l-ps1solute carrier organic anion transporter family member 6c1 like, pseudogene 199740938897461111Rat
1594329Ugt1a4-psUDP glycosyltransferase 1 family, polypeptide A4, pseudogene98877258788773555Rat
1596701Cops9COP9 signalosome subunit 999320984393214774Rat
1594215Dnajb3DnaJ heat shock protein family (Hsp40) member B398879554288796555Rat
1592645Zfp207-ps1zinc finger protein 207, pseudogene 199471618294759721Rat
2318569C9h2orf72similar to human chromosome 2 open reading frame 7298669176786699920Rat
2318130Gigyf2GRB10 interacting GYF protein 298800121288127040Rat
2323399Rpl24-ps2ribosomal protein L24, pseudogene 29108837168108844780Rat
2322949Nsa2-ps1NSA2 ribosome biogenesis factor, pseudogene 198759060687591465Rat
2324352Akain1A-kinase anchor inhibitor 19109389654109436029Rat
2324748Rps26-ps4ribosomal protein S26, pseudogene 49108073668108074017Rat
2325055Alppalkaline phosphatase, placental98776584687768606Rat
6490130Set-ps2Set nuclear proto-oncogene, pseudogene 299452574394574248Rat
6488392LOC100912214uncharacterized LOC10091221499199437591996238Rat
6499336Eef1a1-ps8eukaryotic translation elongation factor 1 alpha 1, pseudogene 898086618480867575Rat
7514331LOC102551819U3 small nucleolar RNA-associated protein 14 homolog B-like98012062280129166Rat
7521510LOC102551060uncharacterized LOC10255106097896537978982823Rat
7513527LOC102548291uncharacterized LOC10254829199216421992167303Rat
7516098LOC102549383uncharacterized LOC1025493839106454196106463002Rat
7538675LOC102555570uncharacterized LOC1025555709110754109110760371Rat
7519496LOC102553550uncharacterized LOC1025535509105754932105760191Rat
7663504LOC102554789uncharacterized LOC10255478999059597190640971Rat
7663763Rps27a-ps9ribosomal protein S27a, pseudogene 999242577992426321Rat
7614446Ybx1-ps8Y box binding protein 1, pseudogene 89111253217111254650Rat
7577720LOC102552268uncharacterized LOC1025522689104080473104090589Rat
7656325LOC102549694protein NYNRIN-like99387646993885044Rat
7657246LOC102555849uncharacterized LOC1025558499111044904111070189Rat
7595527LOC102550706uncharacterized LOC10255070698611970286126905Rat
7595609LOC102555687uncharacterized LOC1025556879110900218110903794Rat
7610058LOC102553020uncharacterized LOC10255302099722913997261503Rat
7570114LOC102553709uncharacterized LOC10255370998344640383484732Rat
7570937LOC102546692uncharacterized LOC1025466929102664654102668053Rat
7593803LOC102555145uncharacterized LOC10255514599097464190981811Rat
7574102Tsen2-ps1tRNA splicing endonuclease subunit 2, pseudogene 19111099648111105546Rat
7574457LOC102550603uncharacterized LOC1025506039108195804108198286Rat
7548599LOC102554430uncharacterized LOC10255443098977724089781278Rat
7607069LOC102554935uncharacterized LOC1025549359105808131105817824Rat
7553846LOC102554187uncharacterized LOC10255418798906466489104187Rat
7588003Smokwl6sperm motility kinase W like 69105876898105901108Rat
7693218LOC102555426uncharacterized LOC1025554269110658044110666509Rat
7694684LOC102554696uncharacterized LOC1025546969105992228106081835Rat
7705608LOC102555030uncharacterized LOC10255503099084553190856417Rat
7726443Smokl6sperm motility kinase like 69105946864106050218Rat
7690483LOC102548542uncharacterized LOC10254854298689060086956019Rat
7682815LOC102552718uncharacterized LOC1025527189105011551105028066Rat
7737812LOC102554475uncharacterized LOC10255447598990182189920445Rat
7714518LOC102548729uncharacterized LOC10254872998709320987102973Rat
7716002LOC102546629uncharacterized LOC1025466299102666911102677582Rat
7696905Ddx11l1DEAD/H-box helicase 11 like 19105994520106018505Rat
7672326LOC102552808uncharacterized LOC1025528089105381302105384784Rat
7728635LOC102556490uncharacterized LOC1025564909102279478102295083Rat
7728853Crocc2ciliary rootlet coiled-coil, rootletin family member 299370878693769617Rat
9102062LOC103690569uncharacterized LOC10369056998946099289469978Rat
9112007LOC103690574ubiquitin-associated domain-containing protein 1 pseudogene99384071293842719Rat
9171458Nyap2neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 298240679782658250Rat
9308951Washc1-ps1WASH complex subunit 1, pseudogene 19106024639106027594Rat
9384454LOC10369058740S ribosomal protein S25 pseudogene99565867595659046Rat
9334462LOC103690562uncharacterized LOC10369056298640947386421040Rat
9346176LOC103690559uncharacterized LOC10369055997939681379426093Rat
9685085Mir149microRNA 14999341438993414477Rat
11456389LOC108351980uncharacterized LOC1083519809103726001103727080Rat
11449647LOC108352031glyceraldehyde-3-phosphate dehydrogenase pseudogene98336527983366295Rat
11455030LOC108351956RING finger protein 223-like97968147879684988Rat
11462050Smokl9sperm motility kinase like 99106111205106125574Rat
11451317LOC108351964uncharacterized LOC10835196497834128378353399Rat
11441754LOC108351966uncharacterized LOC10835196697840676678510208Rat
11432437LOC108352014uncharacterized LOC1083520149106855145106861310Rat
11405256LOC108351976uncharacterized LOC10835197699885796198904468Rat
11406805LOC10835203040S ribosomal protein S2 pseudogene98111517781116076Rat
11424261Gapdh-ps25Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2598952514989526174Rat
11410190LOC108351974uncharacterized LOC10835197499281772392865423Rat
11476313LOC10835200460S ribosomal protein L30-like98426224084265380Rat
11502495LOC108351978uncharacterized LOC10835197899844709698454842Rat
11496487LOC108351983uncharacterized LOC1083519839104707415104717405Rat
11512085LOC108351971uncharacterized LOC10835197198890685488909792Rat
11484248Smokl-ps1sperm motility kinase like, pseudogene 19105911001105913224Rat
11517988LOC108351970uncharacterized LOC10835197098874889788759048Rat
11492101LOC108351965uncharacterized LOC10835196597851091578541993Rat
41138001LOC120094734uncharacterized LOC12009473498709647687113703Rat
41275851LOC120094738uncharacterized LOC12009473898931119889324968Rat
41139248LOC120094737uncharacterized LOC12009473798828213688287642Rat
41206352LOC120094765basic proline-rich protein-like9105566911105572037Rat
41207194LOC120094759uncharacterized LOC1200947599102487656102498261Rat
41281036LOC120094755uncharacterized LOC1200947559100320816100337741Rat
41118077LOC120094722uncharacterized LOC12009472298404353984047154Rat
41173954LOC120094725uncharacterized LOC12009472598568638485693986Rat
41210998Trnal-aag17transfer RNA leucine (anticodon AAG) 179105397716105397796Rat
41328829LOC120094924small nucleolar RNA SNORA179104607118104607247Rat
41329502LOC120094860U6 spliceosomal RNA98792549287925595Rat
41329714LOC120094769uncharacterized LOC1200947699105725482105729155Rat
41363602LOC120094871U6 spliceosomal RNA98779243687792530Rat
41096162Trnav-aac33transfer RNA valine (anticodon AAC) 3398801670588016779Rat
41119897LOC120094730uncharacterized LOC12009473098664897086663626Rat
41120957LOC120094716uncharacterized LOC12009471697889685178933600Rat
41176099LOC120094749uncharacterized LOC12009474999369094793696037Rat
41331248LOC120094919small nucleolar RNA SNORA1798517594485176070Rat
41391292LOC120094761uncharacterized LOC1200947619104394277104396639Rat
41150265LOC120094772ATP-dependent DNA helicase DDX11-like9106076509106093788Rat
41178953LOC120094949small nucleolar RNA U1398719052987190633Rat
41153847Snord20small nucleolar RNA, C/D box 2098700106887001147Rat
41266143LOC1200949515S ribosomal RNA99415679494156912Rat
41266300LOC120094731uncharacterized LOC12009473198668501986707213Rat
41266326LOC120094719uncharacterized LOC12009471998316197583182540Rat
41395183LOC120094750uncharacterized LOC12009475099581984395825054Rat
41155597LOC120094739uncharacterized LOC12009473998932522289345530Rat
41192800LOC120094723uncharacterized LOC12009472398407402184082651Rat
41289198LOC120094894U1 spliceosomal RNA98656550586565670Rat
41345836LOC120094974U6 spliceosomal RNA9104060817104060923Rat
41102138LOC120094812uncharacterized LOC1200948129106743184106751186Rat
41348918LOC120094939small nucleolar RNA SNORA1799542152095421616Rat
41104869Scarna6small Cajal body-specific RNA 698845058488450846Rat
41128648Gapdh-ps40Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 4099735703597358357Rat
41229829Scarna6lsmall Cajal body-specific RNA 6 like98844206588442334Rat
41229971LOC120094810uncharacterized LOC1200948109103266798103279343Rat
41293215LOC120094986U6 spliceosomal RNA99390673393906836Rat
41106528LOC120094724uncharacterized LOC12009472498501268385038789Rat
41132162LOC120094985U6 spliceosomal RNA99208750692087608Rat
41231727Ftl1-ps9ferritin light chain 1, pseudogene 99105518447105520770Rat
41232573LOC120094807uncharacterized LOC12009480799023271790241118Rat
41320137LOC120094925small nucleolar RNA SNORA1799712804597128175Rat
41202132LOC120094979U6 spliceosomal RNA99930440999304515Rat
41233501LOC120094751uncharacterized LOC12009475199591321895960037Rat
40972669LOC120094890small nucleolar RNA SNORA4499260122092601359Rat
41011003LOC120094877U7 small nuclear RNA9111148631111148693Rat
40949615LOC120094936small nucleolar RNA SNORA1798087056180870674Rat
40973822LOC120094851uncharacterized LOC12009485197937539879380326Rat
40974462Spin2l-ps3spindlin family member 2 like, pseudogene 39106059362106061254Rat
40974577LOC120094977U6 spliceosomal RNA9111081719111081825Rat
40952464LOC120094975U6 spliceosomal RNA97975781579757917Rat
41012887Spcs3-ps1signal peptidase complex subunit 3, pseudogene 199303549493038160Rat
41013737Snora75small nucleolar RNA, H/ACA box 7598700024887000384Rat
40953535LOC120094814uncharacterized LOC1200948149110288993110292709Rat
40954341LOC120094865U6 spliceosomal RNA99351284493512931Rat
40978519LOC120094757uncharacterized LOC1200947579101577047101591773Rat
40957244LOC120094727uncharacterized LOC12009472798613731486139788Rat
40983173LOC120094852uncharacterized LOC12009485298924012989242768Rat
41003698Rps10-ps11ribosomal protein S10, pseudogene 119108120999108122987Rat
40984701LOC120094776uncharacterized LOC1200947769107961921107963215Rat
40986825LOC120094767uncharacterized LOC1200947679105733955105735596Rat
41009587LOC120094856uncharacterized LOC1200948569107478401107480416Rat
40940351Snord82small nucleolar RNA, C/D box 8298700451587004586Rat
40940829Trnav-aac37transfer RNA valine (anticodon AAC) 3798721626887216349Rat
40965981LOC120094809uncharacterized LOC12009480999398578693989762Rat
40967038LOC120094742uncharacterized LOC12009474299096632090990369Rat
40993185LOC120094777uncharacterized LOC1200947779110860521110869727Rat
40944180LOC120094914small nucleolar RNA SNORA1798899178588991916Rat
41023977Czib-ps1CXXC motif containing zinc binding protein, pseudogene 199657454496583661Rat
41025529LOC1200948585S ribosomal RNA9104784301104784419Rat
41245564LOC120094891small nucleolar RNA SNORA4397857850178578638Rat
41245914LOC120094752uncharacterized LOC12009475299620883596229501Rat
41051343LOC120094586potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like99799691297998894Rat
41052192Rpl18-ps10ribosomal protein L18, pseudogene 109105120769105143212Rat
41080310LOC120094928small nucleolar RNA SNORA179102916976102917100Rat
41055286Trnap-agg49transfer RNA proline (anticodon AGG) 4998693189386931965Rat
41056435Washc1-ps2WASH complex subunit 1, pseudogene 29106097337106103219Rat
41056788LOC120094980U6 spliceosomal RNA98978862789788730Rat
41317148LOC120094747uncharacterized LOC12009474799342929193434280Rat
41225257LOC120094740uncharacterized LOC12009474098956540589590849Rat
41300199LOC120094721uncharacterized LOC12009472198382906283863252Rat
41035686LOC120094743uncharacterized LOC12009474399102931191033418Rat
41302765LOC120094754uncharacterized LOC12009475499951165699522408Rat
41334814LOC120094758uncharacterized LOC1200947589101690445101717311Rat
41039594LOC120094813uncharacterized LOC1200948139107216101107234238Rat
41236287LOC120094926small nucleolar RNA SNORA1799894837498948498Rat
41305354LOC120094760uncharacterized LOC1200947609102742646102748788Rat
41018431Trnat-agu20transfer RNA threonine (anticodon AGU) 2098033471680334790Rat
41069405LOC120094753uncharacterized LOC12009475399636047096409723Rat
41309199LOC120094735uncharacterized LOC12009473598713565287154677Rat
41021246Trnap-agg31transfer RNA proline (anticodon AGG) 3199839748698397567Rat
41241510LOC120094717uncharacterized LOC12009471798064940180677567Rat
41022835LOC120094905U1 spliceosomal RNA97935164579351807Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10359D9Got10923298788122287881453Ratregion
10965D9Arb525798700863587008898Ratregion
33794D9Mit82019107948703107948903Ratregion
33999D9Mit514297781389477814038Ratregion
34088D9Mgh211098636963186369743Ratregion
34294D9Mgh72449107973446107973690Ratregion
33650D9Mit11309105219893105220033Ratregion
33688D9Mit717598920003589200212Ratregion
36009D9Rat5414998131436481314513Ratregion
36027D9Rat31349100929646100929786Ratregion
36325D9Rat11379111552760111552878Ratregion
37216D9Rat6720998838794388388152Ratregion
37268D9Rat752129105369721105369933Ratregion
37312D9Rat10010199465802494658115Ratregion
35284D9Rat491669111067206111067323Ratregion
35284D9Rat491669111067206111067356Ratregion
36803D9Rat5015099355248293552632Ratregion
36838D9Rat5116698451486184515030Ratregion
36908D9Rat414899205881192058970Ratregion
37002D9Rat5312898119923881199366Ratregion
37052D9Rat615798850705588507212Ratregion
37190D9Rat9921998921570589215924Ratregion
37626D9Rat10720197791580877916013Ratregion
37724D9Rat8420998519398285194188Ratregion
37932D9Rat6820798907535889075565Ratregion
36620D9Rat482079110199119110199326Ratregion
35072D9Rat471709110025175110025345Ratregion
35691D9Rat510898707346887073594Ratregion
39654D9Rat11123098910172889101958Ratregion
39658D9Rat14220198988242189882624Ratregion
39970D9Rat14110099154551291545612Ratregion
38036D9Rat6420199249158992491790Ratregion
38270D9Rat9720199109075891090963Ratregion
38388D9Rat7424198369287683693117Ratregion
40510D9Rat1091509101597509101597663Ratregion
40584D9Rat1531299101016130101016265Ratregion
38536D9Rat1032089107915537107915739Ratregion
40080D9Rat14412798385153183851658Ratregion
38902D9Rat8324599294927192949515Ratregion
39036D9Rat711089107078745107078837Ratregion
39380D9Rat1081339104821531104821652Ratregion
39384D9Rat14523498329093383291164Ratregion
39542D9Rat1401179103532184103532285Ratregion
42896D9Rat16822998698659586986825Ratregion
42899D9Rat1662419107094693107094916Ratregion
42900D9Rat1652159111332055111332272Ratregion
42362D9Rat18623498259800082598227Ratregion
42363D9Rat18723198526960585269815Ratregion
40886D9Rat11214697869194278692080Ratregion
41600D9Rat11017499541071195410867Ratregion
41672D9Rat1632329102302629102302863Ratregion
44638D9Got9425197941223679412487Ratregion
44641D9Got9721497810013078100344Ratregion
44642D9Got9012597856243778562558Ratregion
44644D9Got9112597984257979842704Ratregion
44646D9Got9314598104993281050077Ratregion
44647D9Got10826398697266986972940Ratregion
44648D9Got10720798617469286174899Ratregion
44649D9Wox216298778709587787267Ratregion
44650D9Got10617298608030486080475Ratregion
44653D9Got11413898972242989722567Ratregion
44654D9Got11116799071994690720113Ratregion
44656D9Got11212299142450391424625Ratregion
44657D9Got11617099279342392793590Ratregion
44658D9Got11916499352575193525915Ratregion
44659D9Got11522899340536993405597Ratregion
44660D9Got12018499581054095810719Ratregion
44661D9Got12129699413659594136891Ratregion
44662D9Got11818799511644195116628Ratregion
44663D9Got12221999439383294394051Ratregion
44665D9Got12518099787255897872738Ratregion
44667D9Got1262829110940957110941239Ratregion
44668D9Got1271729110235618110235790Ratregion
44669D9Got1411629107870241107870403Ratregion
60644D9Got10028498256128282561565Ratregion
60645D9Got10127299235666392356935Ratregion
60646D9Got10212297890545778905579Ratregion
60648D9Got10419597951306679513258Ratregion
625807D9Got11025698925897489259230Ratregion
61287D9Uia625797927151179271759Ratregion
66426D9Mco418197885844678858631Ratregion
66432D9Mco728597885844878858739Ratregion
66548D9Uia514698627799986278145Ratregion
67303D9Arb428299099946990999751Ratregion
1630368D9Kyo214498941444189414585Ratregion
1630391D9Got22921898225052082250738Ratregion
1631961D9Ulb125498312954483129798Ratregion
1632142D9Got2182769102402586102402860Ratregion
1632157D9Got2231109109167104109167214Ratregion
1626797D9Mco3325797797343877973695Ratregion
1626824D9Mco3621697887117178871387Ratregion
1626889D9Mco3423397798897777989210Ratregion
1627000D9Mco1528798878671888787007Ratregion
1627019D9Mco2819497789582077896014Ratregion
1627081D9Mco3535697801708478017440Ratregion
1627142D9Mco2921997792657977926798Ratregion
1627308D9Mco3720497885418578854389Ratregion
1627338D9Mco2729397853026178530556Ratregion
1627392D9Mco3130397794526677945569Ratregion
1627520D9Mco3228697795188577952171Ratregion
1628937D9Got2212109107794127107794337Ratregion
1629540D9Got220819110235676110235757Ratregion
1629733D9Wox3321098080922980809441Ratregion
1638663D9Got24225098952728589527535Ratregion
1638702D9Got2091449104363988104364132Ratregion
1638754D9Got24025998952728589527572Ratregion
1638983D9Got23623198831784988318080Ratregion
1639198D9Got24412299363833293638454Ratregion
1639583D9Wox2998850156488501685Ratregion
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1640777D9Got2351989102949808102950003Ratregion
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1641780D9Wox2722898788130487881532Ratregion
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1633278D9Wox4019998878675588786956Ratregion
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1635700D9Wox2620498360243583602639Ratregion
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2302871D9Mco8818997913385179134040Ratregion
2302873D9Mco9323999161661491616855Ratregion
2302885D9Mco8721497892085978921073Ratregion
2302889D9Mco9228099139542391395703Ratregion
2302895D9Mco8224497809295078093194Ratregion
2302897D9Mco9022598016827780168502Ratregion
2302901D9Mco8422997840901178409238Ratregion
2302915D9Mco9422999228248492282715Ratregion
2302917D9Mco8324997824083278241081Ratregion
2302927D9Mco8520097859496678595166Ratregion
2302943D9Mco9120098067632180676524Ratregion
2302945D9Mco8620497879288178793085Ratregion
2302949D9Mco8925097983367679833926Ratregion
7193002D2995111199356583993565950Ratregion
5035937PMC312758P18398700806487008147Ratregion
5035991PMC55360P119498700791987008113Ratregion
5039232RH12758820598717099987171204Ratregion
5039302RH12762820498403893884039142Ratregion
5036484Scg294098080381480804754Ratregion
5036695AU04890028198147040581470686Ratregion
5036941AU04969516598184004781840212Ratregion
5036999AU04987018999352574493525933Ratregion
5037211Lpin21259111155134111155259Ratregion
5035673WI-159861039102316796102316899Ratregion
5033955RH14075115498621444786214601Ratregion
5025970RH13040018098564183985642019Ratregion
5026076RH13081718799465053794650724Ratregion
5026076RH13081718799465053794650724Ratregion
7205754stSG614592098037582580376623Ratregion
7205754stSG614592098037584380376623Ratregion
720577201.MMHAP9FLA1.seq22099797785897978078Ratregion
7206136Irs18198354973883549819Ratregion
5031444AU04830526897822844778228715Ratregion
5034165RH1416152009105585617105585817Ratregion
5028863RH1426161249105732839105732963Ratregion
5028863RH1426161249106024663106024787Ratregion
5031560AU04792221898002882880029046Ratregion
5034211RH14178821299376929493769505Ratregion
5026332RH13180119198803264588032836Ratregion
5028941RH1429051359108811065108811200Ratregion
5029017RH14320022097881655878816778Ratregion
5034386RH656581489102780940102781088Ratregion
5034462BE11865615099598895495989104Ratregion
5026596RH13281718098973890589739085Ratregion
5029071RH1434081599108809531108809690Ratregion
5029073RH14341510499834717398347277Ratregion
5029261RH14412511798636660086366717Ratregion
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5034760AA8915881439107833459107833602Ratregion
5029539AI00907918199394820993948390Ratregion
5029567AI54812010399301412693014229Ratregion
5035088D15S12725698090647680906732Ratregion
5035152BQ19586320699369052093690726Ratregion
5029571BE09567018699339800993398195Ratregion
5035376AI17052615599819143698191591Ratregion
5027097SHGC-3616410798016444680164553Ratregion
5027191AW48793711598025041380250528Ratregion
5027193AB0151368598439121184391296Ratregion
5027195AI6426979699383386793833963Ratregion
5034862AA9460251389104664216104664354Ratregion
5034902AI22774918299181900691819188Ratregion
5029933BE10335718099348819993488379Ratregion
5029973BF4002691959108713795108713990Ratregion
5030005BF3885601569111355981111356234Ratregion
5032715RH13503319299347263793472829Ratregion
5032725RH13507120698111148481111690Ratregion
5032855RH13673612298683483586834957Ratregion
5027747AB0727421469107850212107850358Ratregion
5033075RH1374971849105584673105584857Ratregion
5030449BE10649917099599355395993723Ratregion
5033221RH1380312249106505613106505837Ratregion
5033317RH1383941319102907594102907725Ratregion
5027915RH11824416399844017498440337Ratregion
5030575AA95563322599188013191880356Ratregion
5030661BI3016991619102823576102823781Ratregion
5030661BI3016991619102823620102823781Ratregion
5030691BE10760817699168914391689319Ratregion
5025538RH12871119599384263393842828Ratregion
5028113mHAa21e8.seq1839107397509107397692Ratregion
5030787BE12002617699440764894407824Ratregion
5025752RH12952619299434603494346226Ratregion
5028378AA96051218698652432186524507Ratregion
5028380AI43001016499351007393510237Ratregion
5033695RH13977322098591902685919246Ratregion
5033709RH1398282179109370572109370789Ratregion
5031157BE11657015297881655778816709Ratregion
5054925RH14350312599041740490417529Ratregion
5055017RH14355815498418074284180896Ratregion
5055033RH14356711598886225288862367Ratregion
5051224RH13451119499383000893830202Ratregion
5051308AV12953110798791277187912878Ratregion
5051310U795238999827136398271452Ratregion
5053627RH14275810799434463494344741Ratregion
5055989RH14411916698781976187819927Ratregion
5056041RH14414911099812457498124684Ratregion
5056077RH14416910399806165498061757Ratregion
5056165RH14422129899799561797995915Ratregion
5056467RH1443952469105585619105585865Ratregion
5052083RH9483020098880814088808341Ratregion
5057414AA99772119799081088890811085Ratregion
5054471RH1432431099109369733109369842Ratregion
5054625RH1433311019105862633105862734Ratregion
5054625RH1433311019105862633105862734Ratregion
5054625RH1433311019106141442106141543Ratregion
5054625RH1433311019106141442106141543Ratregion
5054687RH14336719298104100681041198Ratregion
5059424AW53070118399391477893914961Ratregion
5059474AW5244861129109371173109371285Ratregion
5059476AW52448718199203520392035384Ratregion
5059530AI5563041969106321161106321359Ratregion
5055473RH1438211269106849488106850733Ratregion
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5058662BE10228416398417862084178783Ratregion
5056177RH1442282609103957569103957829Ratregion
5056189RH14423510198632925186329352Ratregion
5058834BF38713917899020876990208947Ratregion
5056739RH14455210798830439588304502Ratregion
505216501.MMHAP90FLA1.seq15599143142991431584Ratregion
5056973RH1446871549110694367110694521Ratregion
5052347X5935814997956929879569447Ratregion
5055283RH1437121159104406925104407040Ratregion
5055319RH14373325398531833685318589Ratregion
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5058272BF38691219899416049994160697Ratregion
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5058370BF4197702399106399183106399422Ratregion
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5059122BE10288116599030194390302108Ratregion
5059144AI07142319899355975893559956Ratregion
5059176BE10297715898190589681906054Ratregion
5053377RH1426131699111293477111293646Ratregion
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5059368BG37774814599258654992586694Ratregion
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5053617RH14275217599438899494389169Ratregion
5053621RH14275415497964771179647865Ratregion
5053713RH14280810298979363389793735Ratregion
5050114RH1338701959103958612103958807Ratregion
5052603RH12588431199362775293628063Ratregion
5054033RH1429921109110658044110658154Ratregion
5054081RH14301914699831437498314520Ratregion
5050292RH1339722009102318729102318865Ratregion
5051208RH13450220097988804679888246Ratregion
5053141RH1424772909111452853111453144Ratregion
5053181RH1425001679102673956102674123Ratregion
5054539RH1432831699102997370102997539Ratregion
5050854RH13429618699369103293691218Ratregion
5041722RH12902119698361521683615412Ratregion
5043376RH12999022098637666286376882Ratregion
5041032RH12862420999416200894162217Ratregion
5041122RH12867520298630240886302610Ratregion
5043574RH13010318299383365293833834Ratregion
5041468RH12887421998450944184509660Ratregion
5041534RH1289121809111039095111039275Ratregion
5043992RH13034818999368453193685110Ratregion
5044172RH13045118099844053998440719Ratregion
5045842RH13141018798826709188267278Ratregion
5044724RH13076718098879559988795779Ratregion
5044770RH13079422098104097781041197Ratregion
5044812RH13081819299390972993909921Ratregion
5048782RH1331022209105861747105862434Ratregion
5044852RH1308401979111160755111160952Ratregion
5045382RH1311461819109260153109260334Ratregion
5046436RH13175219898930039389300591Ratregion
5045138RH13100620598375186983752074Ratregion
5046160RH13159318298678418586784367Ratregion
5048836RH1331341599107831131107831290Ratregion
5048956RH13320319199210993392110124Ratregion
5045674RH13131319798591672885916926Ratregion
5047834RH13255520398669970786699910Ratregion
5048996RH13322621998690843786908656Ratregion
5046726RH13191919498652249786522691Ratregion
5049322RH13341421399431383594314048Ratregion
5046806RH13196521599391689593917110Ratregion
5048124RH13272218499085602490856208Ratregion
5048170RH1327481879105298850105299037Ratregion
5049458RH13349215899423428594234443Ratregion
5047036RH1320972129104427902104428114Ratregion
5047050RH13210521598885346188853676Ratregion
5048198RH1327641939105450790105450983Ratregion
5048228RH1327811899105246761105246950Ratregion
5049686RH13362319199342381893424009Ratregion
5049732RH13365018298839255988392741Ratregion
5049768RH13367021798111248581112702Ratregion
5047278RH1322351879105768791105768978Ratregion
5047278RH1322351879105983440105983627Ratregion
5047278RH1322351879106073374106073561Ratregion
5048352RH1328541859110748290110748475Ratregion
5048400RH13288220998012492280125131Ratregion
5048492RH13293420198860694888607149Ratregion
5042352RH12938522099136163591361855Ratregion
5048554RH13297020498418231384182517Ratregion
5048566RH13297718899155353191553719Ratregion
5048634RH1330162009105560202105560402Ratregion
5048634RH1330162009105560202105560402Ratregion
5049616RH1335832129105808271105808484Ratregion
5049616RH1335832129105945219105945424Ratregion
5049616RH1335832129106029479106029692Ratregion
5049616RH1335832129106106727106106939Ratregion
5040334RH1282231889107816670107816858Ratregion
5040428RH12827718598773631787736502Ratregion
5040570RH1283591869110892120110892306Ratregion
5043110RH12983818099300711193007291Ratregion
5043164RH12986822099121696491217184Ratregion
7192183Scg210298080847580808577Ratregion
5042350RH12938419198151311881513309Ratregion
5040668RH12841519199436756694367757Ratregion
5040862RH12852619898652431986524517Ratregion
5043272RH12993118199121700391217184Ratregion
5043560RH13009521498798466287984876Ratregion
5040294RH12820121498719323287193446Ratregion
5040972RH12858921499405093194051145Ratregion
5041170RH12870219598375498583755180Ratregion
5043826RH13025018799599019495990381Ratregion
5042974RH12975518099170958191709761Ratregion
5041494RH12888915298591835585918507Ratregion
5072812RH13706722098655945186559671Ratregion
5074900RH1382831789111385799111385977Ratregion
5074916RH1382932179110019897110020114Ratregion
5075078RH1383861459107624536107624681Ratregion
5075106RH13840224998691568986915938Ratregion
5075192RH1384521479104717188104717335Ratregion
5075494RH13862612698811836488118591Ratregion
5075536RH13865012198016452780164648Ratregion
5074286RH13792917298692701786927189Ratregion
5074332RH13795614399177680391776946Ratregion
5076078RH13896613898790655087906688Ratregion
5076252RH13906816898845382588453993Ratregion
5076416RH13916314998648516586485314Ratregion
5072754RH13703319399351022393510416Ratregion
5072832RH13708021198025031980250530Ratregion
5074600RH1381101389110724913110725051Ratregion
5076666RH13930819999030101490301213Ratregion
5077028RH13951720997990241679902625Ratregion
5080610RH14167919099391053793910727Ratregion
5077172RH1396032009111156362111156562Ratregion
5077330RH13969418698427591784276103Ratregion
5076030RH13893819398717289987173092Ratregion
5075648RH13871617399213611692136289Ratregion
5077572RH13983318098400265584002835Ratregion
5076768RH13936718798080326280803449Ratregion
5076318RH1391061579105450826105450983Ratregion
5079570RH1410752159103826875103827090Ratregion
5077280RH13966521399805955498059767Ratregion
5076440RH13917612099812220198122321Ratregion
5077564RH13982920098363532883635528Ratregion
5078226RH14021718297942584279426024Ratregion
5079858RH1412442189105533226105533444Ratregion
5077758RH1399421829110659291110659473Ratregion
5077778RH1399541819111243577111243758Ratregion
5077948RH14005420999436686694367075Ratregion
5078792RH14055518898721698887217176Ratregion
5079936RH1412881969102572174102572370Ratregion
5078014RH14009218798723641487236601Ratregion
5078022RH14009715099210982192109971Ratregion
5078150RH14017218999874240098742590Ratregion
5078852RH14058919498719736387197557Ratregion
5078454RH14035213597990251679902651Ratregion
5079124RH14074913498112486581124999Ratregion
5079124RH14074913498112486581124999Ratregion
5079190RH14078820699039580290396008Ratregion
5072916RH1371281909107831131107831321Ratregion
5073156RH13727118098695996086960140Ratregion
5079216RH1408031229111157865111157987Ratregion
5071090RH13488121998699752586997744Ratregion
5071162RH13492318097994772379947903Ratregion
5078640RH1404621659111156397111156562Ratregion
5078680RH14048716199066368790663848Ratregion
5078838RH14058118499416808594168269Ratregion
5078874RH14060221798184404581844262Ratregion
5073616RH13753914798405515984055306Ratregion
5072966RH13715716298860801488608176Ratregion
5072980RH13716518999348587893486067Ratregion
5071514RH13512621398454207784542290Ratregion
5073834RH1376651509108811669108811819Ratregion
5073980RH13775013499214062692140760Ratregion
5070854RH13474418398383328483833467Ratregion
5074292RH13793217598844973688449911Ratregion
5074416RH1380041749110720952110721126Ratregion
5071780RH13528020998885737488857583Ratregion
5061820AW52716915298782585487826006Ratregion
5063458BI30183415599892649798926652Ratregion
5063466BI3018701609106386209106386369Ratregion
5066902AU04808317098342158683421756Ratregion
5067390AU04778213998341833583418474Ratregion
5067402AU04777223399839658298396815Ratregion
5067490AU04771322998271573682715960Ratregion
5067510AU04770118499920269199202875Ratregion
5067528AU0476902499110025091110025335Ratregion
5067570AU04766616099839932398399483Ratregion
5067580AU04766022399839933498399557Ratregion
5067868AU0474871709108253829108253995Ratregion
5067998AU04741117098118975281189924Ratregion
5068422AU04715517099307358693073756Ratregion
5069394AU04652814798021058180210770Ratregion
5069394AU04652814798021062180210770Ratregion
5069532AU04643617899111401691114191Ratregion
5070273RH9457216098700446887004628Ratregion
5070305RH12593620998591983885920047Ratregion
5069154AU04668929198075995680760247Ratregion
5069202AU04665113299289451792894646Ratregion
5060164AI07252019498159341881593612Ratregion
5065406AA92414419599424265794242852Ratregion
5060550BE11032615999062678790626946Ratregion
5063960BE1203171989107971721107971919Ratregion
5060848BF3892061349110760213110760347Ratregion
5064268BE1209501789110618214110618392Ratregion
5065826BE1099951699104230061104230230Ratregion
5065972BE1163572389105732629105732867Ratregion
5065972BE1163572389106024759106024997Ratregion
5063822AW53536816799402190294022069Ratregion
5065464BE1155921769105246928105247104Ratregion
5060580BI28604615098930235989302508Ratregion
5060608BE10407715599849273998492894Ratregion
5060626BI28626416998886093288861101Ratregion
5060678BE11081317298393353783933709Ratregion
5062170BE11287317799416209494162271Ratregion
5062212BF3975762389107836365107836603Ratregion
5064032BE12048416498845080988450973Ratregion
5064112BE11406121499833979598340009Ratregion
5065706BF40624715898374818383748341Ratregion
5060892BF401259949107717654107717749Ratregion
5065934BE1162041679102318698102318865Ratregion
5061076BG3794739299384443393844525Ratregion
5062882BE1132062059107583335107583540Ratregion
5066170BF4137242299111472551111472780Ratregion
5061254BE09944315498562674285626896Ratregion
5061304BE09952716398717726887177431Ratregion
5063076BI29585619598180378981803984Ratregion
5066272PMC133987P244398700732287007765Ratregion
5061524BE10539915098930235989302509Ratregion
5084398AI17670719499416134494161538Ratregion
5087088BE10699317099822665398226823Ratregion
5082501BE11958915399168012791680280Ratregion
5086512AW5299031519111137486111137637Ratregion
5087313BM38950116899961419399614361Ratregion
5082675BE1199861569110681429110681585Ratregion
5082961BF39049015699415662394156779Ratregion
5087333BM38959316897895391578954083Ratregion
5083167BI28188218498613754186137725Ratregion
5089433AU0491532379105219894105220133Ratregion
5083657BI27667413999203482192034960Ratregion
5083873AI0106281689103819978103820146Ratregion
5088769AU0487651129109140746109140858Ratregion
5088839AU04880012997927095179271080Ratregion
5090437AU04975018398259279082592975Ratregion
5090571AU04983122399286189092862113Ratregion
5081543BE11729619797989705679897253Ratregion
5081675BE11797315698265212382652279Ratregion
5081685BG371570969106639761106639857Ratregion
5080866RH141828098095077480950955Ratregion
5085161AW53258715899831720498317362Ratregion
5088883AU04882619298384429683844488Ratregion
5085647AI23079716699836648998366655Ratregion
5082525BE1196271629102802654102802816Ratregion
5082657BE11994618299391380793913989Ratregion
5080832RH14180821499195236791952581Ratregion
5084498AA9449701039105585246105585349Ratregion
5082717BF4169671139105456242105456355Ratregion
5082977BF39053815399341786993418022Ratregion
5081208RH14202720397898257678982779Ratregion
5084736AI1713111809111000576111000755Ratregion
5083329BF41786917199393921593939386Ratregion
5081631BF41427913199404859994049469Ratregion
5083441BF39125811497988443779884551Ratregion
5085824BF38816815999321699993217158Ratregion
5503111CUL3-110698160890581609462Ratregion
5503144PSMD110098672993686730503Ratregion
5503160ZNF207-114499475869794758840Ratregion
5503352UniSTS:24053335499080970090810054Ratregion
5503512TRIP12_393049598591973285920227Ratregion
5507567D17S178995098797254587973112Ratregion
5503138OMM105655598392747083928025Ratregion
5503270UniSTS:2376781039102319253102319356Ratregion
5503340UniSTS:238129098788325287884005Ratregion
5503597UniSTS:46471314298360159283601734Ratregion
5503599UniSTS:46471237298360222683602598Ratregion
5504494PMC23772P164397894966178950304Ratregion
5504218RH8000418798016441480164601Ratregion
5504332D17S1516E16899475900494759158Ratregion
5504855ha256484399586065595861498Ratregion
5505430Zfp1618069109336409109337215Ratregion
5505318Nppc80598732344187324246Ratregion
5505740UniSTS:492179138098707567087077050Ratregion
5506129UniSTS:4984317499342290593422979Ratregion
5506330MARC_49122-49123:1117732036:119897883086978831513Ratregion
5506165UniSTS:498517118798858995388591140Ratregion
5506871G470171839110324526110324709Ratregion
5507021fk33e12.x122098652129886522120Ratregion
5500669RH1365902229100601827100602044Ratregion
5500274D19S841142499222013192221555Ratregion
5499703UniSTS:23416719298652432286524514Ratregion
5499705UniSTS:23417413199250753492507665Ratregion
5499707UniSTS:23417120999046948290469691Ratregion
5500807stSG62996750298625370686254208Ratregion
5501033PMC124275P150499200864992009153Ratregion
5501596RH808772269105472175105472401Ratregion
5501582RH765961719105177948105178119Ratregion
5506096UniSTS:49834370999342246293423171Ratregion
5502758EFNA51989102321143102321341Ratregion
5502253AI447901929103956718103956810Ratregion
11354904D9Mco11025098869803788698287Ratregion
11354906D9Mco12121899097588790976105Ratregion
11354931D9Mco11520098954172889541928Ratregion
11353958D9Mco12422099111397791114199Ratregion
11353953D9Mco11686798964905489649921Ratregion
Position Markers

Flank 1: (D9Mit5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2977,813,894 - 77,814,038 (+)MAPPER
Rnor_6.0990,024,661 - 90,024,806NCBI
Rnor_5.0989,765,913 - 89,766,058UniSTS
RGSC_v3.4975,633,467 - 75,633,613RGD
RGSC_v3.4975,633,468 - 75,633,613UniSTS
RGSC_v3.1975,798,653 - 75,798,798RGD
Celera975,378,443 - 75,378,588UniSTS
RH 3.4 Map9757.3RGD
RH 3.4 Map9757.3UniSTS
RH 2.0 Map9794.6RGD
SHRSP x BN Map952.3698RGD
Cytogenetic Map9q33UniSTS
Peak: (D9Rat110)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2995,410,711 - 95,410,867 (+)MAPPER
Rnor_6.09102,531,710 - 102,531,865NCBI
Rnor_5.09102,147,849 - 102,148,004UniSTS
RGSC_v3.4994,217,517 - 94,217,673RGD
RGSC_v3.4994,217,518 - 94,217,673UniSTS
RGSC_v3.1994,426,997 - 94,427,153RGD
Celera992,908,963 - 92,909,118UniSTS
SHRSP x BN Map964.7399RGD
SHRSP x BN Map964.7399UniSTS
Flank 2: (D9Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,552,760 - 111,552,878 (+)MAPPER
Rnor_6.09119,983,734 - 119,983,851NCBI
Rnor_5.09119,437,469 - 119,437,586UniSTS
RGSC_v3.49110,864,130 - 110,864,247UniSTS
RGSC_v3.49110,864,129 - 110,864,247RGD
RGSC_v3.19111,073,609 - 111,073,727RGD
Celera9108,665,341 - 108,665,458UniSTS
RH 3.4 Map9880.1RGD
RH 3.4 Map9880.1UniSTS
RH 2.0 Map91043.1RGD
SHRSP x BN Map979.5198RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat
1354645Swd1Spike wave discharge measurement QTL 13.910.00012brain electrophysiology trait (VT:0010557)mean duration of a single type I spike-and-wave discharge train (CMO:0002064)9101597509102302863Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross 7794780
qtl_general inducing agent: one dose of 400 r 127Cs-radiation 7794780
qtl_general measuring method: mammary tumor was induced at 40 days of age by whole body radiation; animals were sacrificed when tumors were 3 cm in diameter or at 12 months of age; tumor latency and tumor burden index was calculated 7794780
qtl_general number of animals: 12 each of SR/JrHsd and SS/JrHsd; 150 F2 sex of animals: females 7794780
qtl_general software used: Map Manager QTXb19 7794780
qtl_general SR/JrHsd exhibit decrease tumor latency and increase tumor burden index compared to SS/JrHsd 7794780
qtl_general spans Chr9:84-104 Mbp 7794780