Memor18 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Memor18 (Memory QTL 18) Rattus norvegicus

Symbol: Memor18
Name: Memory QTL 18
RGD ID: 7394837
Previously known as: NAV-5
Trait: exploratory behavior trait   (VT:0010471)    
Measurement Type: measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus   (CMO:0000957)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81723,550,213 - 68,550,213RGD_MAPPER_PIPELINE
mRatBN7.21756,396,477 - 63,640,182RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01761,355,300 - 67,004,384RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01723,744,952 - 68,744,952RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41729,663,991 - 74,663,991RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed:
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Smokxl1 is a candidate Gene for Memor18

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Dahl (S x R) rat congenic strain analysis confirms and defines a chromosome 17 spatial navigation quantitative trait locus to <10 Mbp. Herrera VL, etal., PLoS One. 2013;8(2):e58280. doi: 10.1371/journal.pone.0058280. Epub 2013 Feb 28.
Related QTLs

Related QTL Description Reference
Memor5 sub_region RGD:7394833


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9098363LOC103694114DNA repair protein RAD51 homolog 1 pseudogene175669436556695323Rat
1589709Nsfl1c-ps1NSFL1 cofactor, pseudogene 1175705725957058451Rat
40985311Trnaa-agc37transfer RNA alanine (anticodon AGC) 37175719764257197722Rat
1560525Fzd8frizzled class receptor 8175731292457320551Rat
628621Gjd4gap junction protein, delta 4175734884457352601Rat
1565969Ccnycyclin Y175738500257512860Rat
6501948LOC100909729uncharacterized LOC100909729175751315957514759Rat
9152346LOC103690071interaptin-like175762154257900975Rat
9472036PotedPOTE ankyrin domain family member D175794212457975149Rat
1566097Anlnl1anillin, actin binding protein-like 1175798534057995824Rat
621272Lgals8galectin 8175802465258052764Rat
1564769Heatr1HEAT repeat containing 1175805328858093895Rat
1308097Actn2actinin alpha 2175814333458210622Rat
41054517Trnas-aga47transfer RNA serine (anticodon AGA) 47175819156958191644Rat
621283Mtr5-methyltetrahydrofolate-homocysteine methyltransferase175821999858308560Rat
41377181LOC120097915uncharacterized LOC120097915175824370458247835Rat
41125104LOC120097928SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like175827429558278695Rat
41267736Rps7-ps15ribosomal protein S7, pseudogene 15175832060758324029Rat
620314Ryr2ryanodine receptor 2175838992558975641Rat
41332867LOC120098026small nucleolar RNA U3175842230958422433Rat
628708Zp4zona pellucida glycoprotein 4175900564959012202Rat
41156892LOC120097906uncharacterized LOC120097906175913071959138035Rat
41243501LOC120097813uncharacterized LOC120097813175933758259355633Rat
1589973Nsa2-ps11NSA2 ribosome biogenesis factor, pseudogene 11175962502059625946Rat
2343Chrm3cholinergic receptor, muscarinic 3176000513760467250Rat
1303252Zmynd11zinc finger, MYND-type containing 11176054266960631913Rat
1560155Dip2cdisco-interacting protein 2 homolog C176064734661032467Rat
11470481LOC108348621uncharacterized LOC108348621176070470960733102Rat
41219403Adi1-ps1acireductone dioxygenase 1, pseudogene 1176098927360989828Rat
9362362LOC10369411660S ribosomal protein L22 pseudogene176108489261085261Rat
1310713Larp4bLa ribonucleoprotein 4B176113866361217423Rat
41242720LOC120097870uncharacterized LOC120097870176124753661263382Rat
620783Gtpbp4GTP binding protein 4176130803361328184Rat
1559783Idi2isopentenyl-diphosphate delta isomerase 2176133138561334987Rat
41339945LOC120097764isopentenyl-diphosphate delta-isomerase 2-like176133862261349795Rat
1564347Idi2l2isopentenyl-diphosphate delta isomerase 2 like 2176137285361386459Rat
7617990LOC102552003uncharacterized LOC102552003176138493861387088Rat
9378476LOC103690178nucleolar GTP-binding protein 1-like176140456161417990Rat
9352023Idi2-ps1isopentenyl-diphosphate delta isomerase 2, pseudogene 1176142035761423924Rat
7740538LOC102550988isopentenyl-diphosphate delta-isomerase 2-like176145192061457799Rat
2322079LOC100360477hypothetical protein LOC100360477176147703761483516Rat
1589708Eef1g-ps11eukaryotic translation elongation factor 1 gamma, pseudogene 11176149758161498918Rat
7541008LOC102551575isopentenyl-diphosphate delta-isomerase 2-like176150429461507015Rat
1564999Idi2l3isopentenyl-diphosphate delta isomerase 2 like 3176151813861535484Rat
40959177Eef1g-ps8eukaryotic translation elongation factor 1 gamma, pseudogene 8176155698761562152Rat
6489760LOC100911936uncharacterized LOC100911936176156873761578142Rat
621835Idi1isopentenyl-diphosphate delta isomerase 1176162959261637357Rat
1306189Wdr37WD repeat domain 37176163725861703677Rat
621519Adarb2adenosine deaminase RNA specific B2176175043762300984Rat
7646455LOC102552293uncharacterized LOC102552293176194057461982314Rat
2325073Elobl1elongin B like 1176220896662209274Rat
11485055LOC108348614uncharacterized LOC108348614176329355663296453Rat
1585155Moap1-ps1modulator of apoptosis 1, pseudogene 1176338020763381740Rat
6497110Atp5mg-ps7ATP synthase membrane subunit g, pseudogene 7176363638763636687Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10348D17Mit4231176046341260463643Ratregion
10349D17Arb7237176046340560463642Ratregion
10350D17Wox12137176046350060463637Ratregion
10351D17Wox13150176046348360463633Ratregion
36211D17Rat34159176227078862270949Ratregion
37234D17Rat97239176210933362109574Ratregion
35258D17Rat36173176364000963640182Ratregion
36996D17Rat31162175683672856836890Ratregion
37762D17Rat170176175949767959497857Ratregion
34821D17Rat56122175648264756482769Ratregion
35052D17Rat33135176011018860110323Ratregion
35062D17Rat30177175812456458124741Ratregion
35585D17Rat151166176078142660781592Ratregion
35893D17Rat38158176355506163555219Ratregion
40400D17Rat148141175803800658038147Ratregion
40114D17Rat122117176000088060000997Ratregion
40198D17Rat123171175876879458768965Ratregion
40316D17Rat124134176117751661177650Ratregion
38798D17Rat150220175801245258012678Ratregion
42045D17Arb5127175869183558691962Ratregion
42418D17Rat68171175863292958633100Ratregion
43098D17Rat149135175816531158165446Ratregion
45480D17Got79108175881625858816366Ratregion
45481D17Got77108175854148258541590Ratregion
45482D17Got75218175996373459963952Ratregion
45484D17Got74191176001893760019130Ratregion
45485D17Wox9108175724672357246843Ratregion
45487D17Hmgc2200176108840561088605Ratregion
45488D17Got80171176348992063490091Ratregion
60772D17Wox4162175813056958130741Ratregion
60156D17Got71144175793532457935468Ratregion
60156D17Got71144175793532457935468Ratregion
60157D17Got72269175648264756482916Ratregion
61300D17Mco3274175955501359555289Ratregion
1631795D17Got216106176103579161035895Ratregion
1635830D17Uwm3166175692621756926383Ratregion
7394842rs65978719175639647756396477Ratregion
7394844rs106534785176114994661149946Ratregion
5038726AW04837697175738158457381681Ratregion
5028629RH124435278175805806058058338Ratregion
7206236Fzd882175731770057317782Ratregion
5031508AU048093284176215714862157432Ratregion
5031690AU047474241175760185857602099Ratregion
5034482BF41563097176054527560545372Ratregion
5027119RH70526130175944187759442007Ratregion
502787519.MMHAP16FRG7.seq183175691302956913212Ratregion
5028567C76891232175789663457896866Ratregion
5028567C76891232175789663457896866Ratregion
5055083RH143596165175834096158341126Ratregion
5053671RH142783108176064869960648807Ratregion
5054587RH143310241176163101761631258Ratregion
5056465RH144394241175751447757514718Ratregion
5050586RH134141164175821329858213462Ratregion
5053361RH142604161176133161861331779Ratregion
5053361RH142604161176133161861331779Ratregion
5044366RH130561208176162966161629869Ratregion
5045974RH131486217175897533058975547Ratregion
5042152RH129270203176113881661139019Ratregion
5048538RH132961180176170344061703620Ratregion
5039398RH127683215176063156860631783Ratregion
5040538RH128341206175738139057381596Ratregion
5072750RH137031213176132859461328807Ratregion
5072750RH137031213176132859461328807Ratregion
5072750RH137031213176141788961418102Ratregion
5072750RH137031213176141788961418102Ratregion
5076080RH138967152176064864860648800Ratregion
5077668RH139889198176163748061637678Ratregion
5077952RH140056192176103023461030426Ratregion
5073222RH137311180175738484357385023Ratregion
5073710RH137593154176175060561750759Ratregion
5068832AU046899269176157905261579322Ratregion
5068832AU046899269176157905261579322Ratregion
5069730AU046308122176272080462720926Ratregion
5062656BF403708220176210119262101412Ratregion
5060586BE098513150176165221361652363Ratregion
5061476BE111848159175731299857313157Ratregion
5087283AW531528186175817987458180060Ratregion
5082683BF416571213176182705361827266Ratregion
5089939AU049454268176099615560996421Ratregion
5089281AU049062188175979416959794357Ratregion
5089685AU049302280176140062661400896Ratregion
5084406AI40898296176167090961671005Ratregion
5090103AU049552248175876877858769026Ratregion
5081230RH142039166175731804557318211Ratregion
5085713AA849380155176118296261183117Ratregion
5503076Actn2121175817097158172160Ratregion
5507549G06312245176063161260631858Ratregion
5507709UniSTS:25682101176063174660631847Ratregion
5504308D10S1340E111176063174660631857Ratregion
5504887ha30461560175742191857423478Ratregion
5504999Fzd8155175731681457316969Ratregion
5504472PMC21940P1246175897512058975366Ratregion
5507271fc41h02.x1817175992373059924675Ratregion
5507287fb54b04.x10176000564260006974Ratregion
5507287fb54b04.x10176000564260006996Ratregion
5500741G26357217176062989760630114Ratregion
5500793stSG625620867175930361859304485Ratregion
5505530A005N471694175787883057880524Ratregion
5506907G47699239176249047262490711Ratregion
152023625rs1072979910175706780557067805Ratregion
152025237rs1057390160175992909559929095Ratregion
Position Markers

Flank 1: (rs65978719)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21756,396,477 - 56,396,477RGD
Rnor_6.01761,355,300 - 61,355,300RGD
Celera1757,695,835 - 57,695,835RGD
Flank 2: (D17Rat36)
Rat AssemblyChrPosition (strand)Source
GRCr81768,550,040 - 68,550,213 (+)Marker Load Pipeline
mRatBN7.21763,640,009 - 63,640,182 (+)MAPPER
Rnor_6.01767,004,212 - 67,004,384NCBI
Rnor_5.01768,744,780 - 68,744,952UniSTS
RGSC_v3.41774,663,818 - 74,663,991RGD
RGSC_v3.41774,663,819 - 74,663,991UniSTS
RGSC_v3.11774,674,651 - 74,674,824RGD
Celera1763,238,273 - 63,238,445UniSTS
RH 2.0 Map17570.6RGD
SHRSP x BN Map1734.8699RGD
FHH x ACI Map1744.4RGD
Cytogenetic Map17 RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)175402992960463637Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176364000973951021Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)175639647763640182Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-05 Memor18  Memory QTL 18  Memor18  Memory QTL 5  Name updated 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general measurement method: animals were phenotyped using the Morris water maze (MWM), test of spatial navigation, distance was measured and used to evaluate performance, 12 trails/day for 2 days with a 60 sec maximum swim time 7394833
qtl_general region spans 65.02-74.66 Mbp 7394833
qtl_general number of animals used: 16 of each stain type 7394833
qtl_general software used: Two-Way ANOVA and One-Way ANOVA 7394833