Cm20 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cm20 (Cardiac mass QTL 20) Rattus norvegicus

Symbol: Cm20
Name: Cardiac mass QTL 20
RGD ID: 724543
Previously known as: Hw5; Heart weight QTL 5
Trait: heart mass   (VT:0007028)    
Measurement Type: calculated heart weight   (CMO:0000073)    
LOD Score: 3.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2916,961,398 - 40,594,091RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0919,520,489 - 45,029,794RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0918,398,986 - 44,725,204RGDRnor5.0
RGSC_v3.4912,625,041 - 37,313,370RGDRGSC3.4
RGSC_v3.1912,622,363 - 37,314,694RGD
Cross Type: intercross
Strains Crossed: SS/JrTol SHR/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait
heart mass  (IDA)

Rat Strain
SHR/NHsd  (IEA)
SS/JrTol  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Time-course genetic analysis of albuminuria in Dahl salt-sensitive rats on low-salt diet. Garrett MR, etal., J Am Soc Nephrol 2003 May;14(5):1175-87.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69198Rcan2regulator of calcineurin 291695947817174823Rat
1307471Cyp39a1cytochrome P450, family 39, subfamily a, polypeptide 191723045517306775Rat
41220628LOC120094639uncharacterized LOC12009463991725419617257745Rat
620787Slc25a27solute carrier family 25, member 2791730689817333942Rat
1305956Tdrd6tudor domain containing 691734403317359348Rat
1310734Pla2g7phospholipase A2 group VII91736221417404476Rat
1560151Ankrd66ankyrin repeat domain 6691742143217441212Rat
41116623LOC120094640uncharacterized LOC12009464091743427317459213Rat
3080Mep1ameprin A subunit alpha91747463417504147Rat
621679Adgrf5adhesion G protein-coupled receptor F591751759617624107Rat
1310285Adgrf1adhesion G protein-coupled receptor F191766125817696359Rat
41053828LOC120094840uncharacterized LOC12009484091774401517747544Rat
41343382Atp5mg-ps1ATP synthase membrane subunit g, pseudogene 191776067617760986Rat
41272310LOC120094841uncharacterized LOC12009484191779406017801338Rat
1307308Tnfrsf21TNF receptor superfamily member 2191787915617954085Rat
727803Cd2apCD2-associated protein91808674418182744Rat
1306718Adgrf2adhesion G protein-coupled receptor F291823838918248745Rat
1565216Adgrf4adhesion G protein-coupled receptor F491827205018303219Rat
727869Opn5opsin 591836839318416098Rat
40929597Trnat-agu32transfer RNA threonine (anticodon AGU) 3291839905618399136Rat
1563020Ptchd4patched domain containing 491846293418666272Rat
41148077LOC120094642uncharacterized LOC12009464291988249019909177Rat
1587662Mmutmethylmalonyl-CoA mutase91992872019956985Rat
1359451Cenpqcentromere protein Q91995712219972807Rat
1587643Glyatl3glycine-N-acyltransferase-like 391997749319995723Rat
1588829C9h6orf141similar to human chromosome 6 open reading frame 14192002491620029094Rat
1564244Cyp2ac1cytochrome P450, family 2, subfamily ac, polypeptide 192003582320058570Rat
61871RhagRh-associated glycoprotein92006980020097836Rat
621653Crisp2cysteine-rich secretory protein 292010764920131967Rat
9450374LOC103690514exocrine gland-secreted peptide 1-like92014367220150293Rat
11390506Rpl36a-ps6ribosomal protein L36A, pseudogene 692018293820195730Rat
11433453LOC108351994exocrine gland-secreted peptide 1-like92020572720212941Rat
1586485Uqcrb-ps2ubiquinol-cytochrome c reductase binding protein, pseudogene 292035341420353798Rat
619846Crisp3cysteine-rich secretory protein 392043205120472663Rat
40999450LOC120094644uncharacterized LOC12009464492046236620468036Rat
1306627Pgk2phosphoglycerate kinase 292048036720481933Rat
41032701LOC120094842uncharacterized LOC12009484292054784420555930Rat
41297475LOC120094927U1 spliceosomal RNA92058290620583063Rat
41131560Ubbl3ubiquitin B like 392066143520662315Rat
11397802LOC108351900uncharacterized LOC10835190092066334820670645Rat
41309930LOC120094646uncharacterized LOC12009464692070335220714779Rat
1590757Crisp1cysteine-rich secretory protein 192074177520768796Rat
1560245Defb49defensin beta 4992083268620837352Rat
1559758Defb18defensin beta 1892085223020853247Rat
1562466Defb16-psdefensin beta 16 pseudogene92087506420883875Rat
1565718Defb17defensin beta 1792088024620883875Rat
1585305Prmt1-ps3protein arginine methyltransferase 1, pseudogene 392129985121301148Rat
41106882LOC120094874U7 small nuclear RNA92131650421316566Rat
40979134LOC120094879U7 small nuclear RNA92131665421316712Rat
9222779LOC103690504ubiquitin-conjugating enzyme E2 N-like92135783621358387Rat
41216390LOC120094920small nucleolar RNA SNORA1792152044521520572Rat
1304864Tfap2dtranscription factor AP-2 delta92168057721744840Rat
1306321Tfap2btranscription factor AP-2 beta92178625121816054Rat
1308476Pkhd1PKHD1 ciliary IPT domain containing fibrocystin/polyductin92254739623037443Rat
41204456Rpl19-ps12ribosomal protein L19, pseudogene 1292292760822932930Rat
41309300LOC120094648uncharacterized LOC12009464892308610723099478Rat
2325550Mir206microRNA 20692309424923094332Rat
2325527Mir133bmicroRNA 133b92309813423098217Rat
2888Il17ainterleukin 17A92314440223147889Rat
1584090Ppig-ps1peptidylprolyl isomerase G, pseudogene 192315970023162455Rat
41327487LOC120094868U6 spliceosomal RNA92317884423178936Rat
1311398Il17finterleukin 17F92319009423201482Rat
1305168Mcm3minichromosome maintenance complex component 392321916923237314Rat
2318314Cct7-ps4chaperonin containing TCP1 subunit 7, pseudogene 492323722223241597Rat
41151456LOC120094940small nucleolar RNA SNORA1792326215223262285Rat
1311710Paqr8progestin and adipoQ receptor family member 892331252123362175Rat
40980684LOC120094937small nucleolar RNA SNORA1792333872223338803Rat
7567345LOC102549795uncharacterized LOC10254979592334850723376276Rat
1587365Efhc1EF-hand domain containing 192337581523414283Rat
1589151Tram2translocation associated membrane protein 292341920423498745Rat
7706003LOC102549948uncharacterized LOC10254994892351713023522234Rat
7743195LOC102550123uncharacterized LOC10255012392361424323645208Rat
1562107Gsta3l1glutathione S-transferase alpha 3 like 192361969123628517Rat
1307710Tmem14atransmembrane protein 14A92364059423652379Rat
1591980Gsta3glutathione S-transferase alpha 392365857423684240Rat
7676682Mkrn1-ps1makorin ring finger protein 1, pseudogene 192367258623673857Rat
11474512LOC108351903uncharacterized LOC10835190392368406623690680Rat
41174992LOC120094861U6 spliceosomal RNA92369826123698371Rat
2753Gsta1glutathione S-transferase alpha 192370347623720121Rat
1566137Rpl10a-ps1ribosomal protein L10A, pseudogene 192372079023721499Rat
1565402Gsta6glutathione S-transferase alpha 692374326223806260Rat
41373830Erh-ps1ERH, mRNA splicing and mitosis factor, pseudogene 192375303123753355Rat
1586180p53-psWistar clone pR53P1 p53 pseudogene92381058023812111Rat
1597396Khdc1KH domain containing 192381244223814932Rat
1596202Khdc1bKH domain containing 1B92382199323827647Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592383018524395984Rat
620000Rims1regulating synaptic membrane exocytosis 192469695925196404Rat
1594773Hnrnpc-ps2heterogeneous nuclear ribonucleoprotein C, pseudogene 292537089225371782Rat
1309049Ppp1r14blprotein phosphatase 1, regulatory inhibitor subunit 14B like92553116525532798Rat
41158924LOC120094650uncharacterized LOC12009465092555150625649126Rat
1586777Snrpd1-ps1small nuclear ribonucleoprotein D1 polypeptide, pseudogene 192555610225556765Rat
41057709LOC120094649uncharacterized LOC12009464992559278325615957Rat
41044195LOC120094935small nucleolar RNA SNORA1792569842425698531Rat
2325588Mir30amicroRNA 30a92573760025737670Rat
2325587Mir30c2microRNA 30c-292575734225757425Rat
41059212Rbx1-ps1ring-box 1, pseudogene 192576451325773891Rat
41039806Rpl10a-ps8ribosomal protein L10A, pseudogene 892578826125791426Rat
1308498Ogfrl1opioid growth factor receptor-like 192582886525842424Rat
41240384LOC120094843uncharacterized LOC12009484392588909425898507Rat
11497442LOC10835202060S ribosomal protein L23a pseudogene92589741325897934Rat
620903B3gat2beta-1,3-glucuronyltransferase 292616717426250153Rat
41331243LOC12009465260S ribosomal protein L29-like92617586926176521Rat
1585595Smap1small ArfGAP 192625017826342151Rat
1588998Sdhaf4succinate dehydrogenase complex assembly factor 492640833226416478Rat
1304927Fam135afamily with sequence similarity 135, member A92642011626500803Rat
7580017LOC102553447uncharacterized LOC10255344792650725926562437Rat
1309425Col9a1collagen type IX alpha 1 chain92658503426668222Rat
1308920Col19a1collagen type XIX alpha 1 chain92667391627022139Rat
9363755LOC103690510ADP-ribosylation factor-like protein 3 pseudogene92677224326773400Rat
708471Lmbrd1LMBR1 domain containing 192709638727178095Rat
1591063Rpl11-ps11ribosomal protein L11, pseudogene 1192722390727224465Rat
2323882Psme1-ps2proteasome activator subunit 1, pseudogene 292729459227295842Rat
1309703Adgrb3adhesion G protein-coupled receptor B392742116828148979Rat
40964348LOC120094962U2 spliceosomal RNA92765647227656615Rat
41255525LOC120094653uncharacterized LOC12009465392814930428154124Rat
41042201LOC120094965U4 spliceosomal RNA92844600728446144Rat
41227410LOC120094898U11 spliceosomal RNA92856277828562911Rat
41262561LOC120094978U6 spliceosomal RNA92866414928664255Rat
11365616Hsp90ab1-ps20heat shock protein 90 alpha family class B member 1, pseudogene 2092877386328789378Rat
41366852LOC120094941small nucleolar RNA SNORA1792887119028871294Rat
1588763Spata31e1l1SPATA31 subfamily E, member 1 like 192899323128999521Rat
2318365Rplp1-ps3ribosomal protein lateral stalk subunit P1, pseudogene 392906258729063019Rat
41057302LOC120094866U6 spliceosomal RNA92973260929732713Rat
7729430LOC102554152uncharacterized LOC10255415293005567730066038Rat
41017258LOC120094982U6 spliceosomal RNA93029237930292485Rat
1559965Wbp11-ps5WW domain binding protein 11, pseudogene 593076218030763745Rat
41280595LOC120094655uncharacterized LOC12009465593084836330925836Rat
40955717LOC120094934small nucleolar RNA SNORA1793085867830858801Rat
6489933Spata31e1SPATA31 subfamily E, member 193109855731104212Rat
40932165LOC120094656uncharacterized LOC12009465693124350231265028Rat
41327919LOC120094657uncharacterized LOC12009465793177815331826103Rat
7637214LOC102554281uncharacterized LOC10255428193185543031907027Rat
1592055Hnrnpa1-ps17heterogeneous nuclear ribonucleoprotein A1, pseudogene 1793240353632405287Rat
1588705Dnajb6-ps6DnaJ heat shock protein family (Hsp40) member B6, pseudogene 693279874632799447Rat
2318113Zfp706-ps1zinc finger protein 706, pseudogene 193297066932970915Rat
621477Eif4g2-ps1eukaryotic translation initiation factor 4, gamma 2, pseudogene 193304688433050665Rat
1304925Phf3PHD finger protein 393306385533136013Rat
61970Ptp4a1protein tyrosine phosphatase 4A193321420133245046Rat
7590823LOC102548289uncharacterized LOC10254828993322266233247053Rat
727925Lgsnlengsin, lens protein with glutamine synthetase domain93341636233447919Rat
41117169LOC120094931small nucleolar RNA SNORA1793353951733539639Rat
1586396Ube2v1-ps22ubiquitin conjugating enzyme E2 V1, pseudogene 2293363377033634238Rat
41062037LOC120094908small nucleolar RNA SNORA4893364748933647629Rat
6500396Eef1a1-ps1eukaryotic translation elongation factor 1 alpha 1, pseudogene 193380476333825540Rat
41178156LOC120094869U6 spliceosomal RNA93391259533912698Rat
621738Khdrbs2KH RNA binding domain containing, signal transduction associated 293444702334953684Rat
41205098LOC120094876U7 small nuclear RNA93481841034818473Rat
1586334Zfp622l1zinc finger protein 622 like 193547860335480175Rat
1586327Fus-ps6FUS RNA binding protein, pseudogene 693554914035550782Rat
6500780Swi5-ps1SWI5 homologous recombination repair protein, pseudogene 193563369035641769Rat
1590809Trir-ps2telomerase RNA component interacting RNase, pseudogene 293567960735690156Rat
631433Prim2DNA primase subunit 293569237635904521Rat
1585200Cfl2-ps2cofilin-2, pseudogene 293593445635934941Rat
1306867Rab23RAB23, member RAS oncogene family93594352235967367Rat
1585173Bag2BAG cochaperone 293597003335980677Rat
40982266Ube2i-ps5ubiquitin-conjugating enzyme E2I, pseudogene 593598239035984367Rat
1305865Zfp451zinc finger protein 45193598544136040991Rat
41388092Rps18-ps7ribosomal protein S18, pseudogene 793604717836048807Rat
1310392Bend6BEN domain containing 693608103336135309Rat
1306566Dstdystonin93613565736529617Rat
7647959LOC102551615uncharacterized LOC10255161593623287736236460Rat
7638136Foxo1lforkhead box O1 like93663661736646847Rat
41065030LOC120094660uncharacterized LOC12009466093664695436649913Rat
11444069Trnae-uuc5transfer RNA glutamic acid (anticodon UUC) 593664787436647945Rat
1304653Ccdc115coiled-coil domain containing 11593665038436654348Rat
1308463Imp4IMP U3 small nucleolar ribonucleoprotein 493665412736659265Rat
1311586Ptpn18protein tyrosine phosphatase, non-receptor type 1893667232536689963Rat
1309276Prss39protease, serine, 3993669503736713004Rat
1562188Cfc1cripto, FRL-1, cryptic family 193674210636751931Rat
1561330Prss40protease, serine, 4093676217036770979Rat
41154104Rcbtb1-ps1RCC1 and BTB domain containing protein 1, pseudogene 193677613336790749Rat
1560420Amer3APC membrane recruitment protein 393679035536802341Rat
41346670LOC120094661thymosin beta-10-like93683736136852737Rat
1562461Rplp1-ps1ribosomal protein lateral stalk subunit P1, pseudogene 193684993236855302Rat
1586179Arhgef4Rho guanine nucleotide exchange factor 493686180037005079Rat
41114033LOC120094663uncharacterized LOC12009466393692366936928337Rat
1583985Fam168bfamily with sequence similarity 168, member B93700556937038631Rat
41242603LOC120094662uncharacterized LOC12009466293703746337047132Rat
1310954Plekhb2pleckstrin homology domain containing B293704958037082231Rat
41119832LOC120094916U1 spliceosomal RNA93707511237075272Rat
1560533Rps14-ps2ribosomal protein S14, pseudogene 293715329037153723Rat
41107238LOC120094913small nucleolar RNA SNORA1793733515037335272Rat
41333059LOC120094922small nucleolar RNA SNORA1793733552637335650Rat
41290364LOC120094862U6 spliceosomal RNA93796214137962247Rat
41190690LOC120094844uncharacterized LOC12009484493803119438033635Rat
41024403LOC120094664uncharacterized LOC12009466493812136838165876Rat
41096174LOC120094665uncharacterized LOC12009466593813057338137099Rat
6484877Hdac1-ps10Histone deacetylase 1, pseudogene 1093817277738173577Rat
1309218Hs6st1heparan sulfate 6-O-sulfotransferase 193828350238322684Rat
619710Uggt1UDP-glucose glycoprotein glucosyltransferase 193835522938468473Rat
6501582LOC100909803uncharacterized LOC10090980393848109638488323Rat
1359633Neurl3neuralized E3 ubiquitin protein ligase 393849448638503352Rat
7500673LOC102554222uncharacterized LOC10255422293850255338512621Rat
1311041Arid5aAT-rich interaction domain 5A93853461238549467Rat
1309220Kansl3KAT8 regulatory NSL complex subunit 393856217038605757Rat
1583681Fer1l5fer-1-like family member 593860583538661869Rat
1311393Lman2llectin, mannose-binding 2-like93866170938685244Rat
1305571Cnnm4cyclin and CBS domain divalent metal cation transport mediator 493871172638750942Rat
1307926Cnnm3cyclin and CBS domain divalent metal cation transport mediator 393875537438770740Rat
1310398Ankrd23ankyrin repeat domain 2393877323438778705Rat
1559504Ankrd39ankyrin repeat domain 3993878029138790177Rat
1562837Sema4csemaphorin 4C93879166838802171Rat
1564591Fam178bfamily with sequence similarity 178, member B93880586438913681Rat
41115964LOC120094668uncharacterized LOC12009466893891376938918495Rat
620608Cox5bcytochrome c oxidase subunit 5B93892198038923806Rat
1307380Actr1bactin related protein 1B93892881938938483Rat
6501168C9h2orf92similar to human chromosome 2 open reading frame 9293894392738984878Rat
41036328LOC120094966U4 spliceosomal RNA93898235938982474Rat
3983Zap70zeta chain of T cell receptor associated protein kinase 7093898975039011701Rat
1309266Tmem131transmembrane protein 13193901647039162841Rat
1562560Vwa3bvon Willebrand factor A domain containing 3B93924952339419614Rat
41312543Trnaa-agc41transfer RNA alanine (anticodon AGC) 4193930165739301729Rat
7728653LOC102554996uncharacterized LOC10255499693933222239334749Rat
70948Cnga3cyclic nucleotide gated channel subunit alpha 393944753439494044Rat
68386Inpp4ainositol polyphosphate-4-phosphatase type I A93952824539650574Rat
1565095Coa5cytochrome C oxidase assembly factor 593965145939664870Rat
621749Unc50unc-50 inner nuclear membrane RNA binding protein93966494439674369Rat
1305650Mgat4aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A93967342739786747Rat
41360059LOC120094669uncharacterized LOC12009466993969766939727620Rat
1310819CracdlCRACD like93983432139950763Rat
41240104LOC120094963U2 spliceosomal RNA93993229239932472Rat
621142Tsga10testis specific 1093999120340098259Rat
1310276Lipt1lipoyltransferase 194010793840118268Rat
1307700Mitd1microtubule interacting and trafficking domain containing 194011394340125280Rat
1308196Mrpl30mitochondrial ribosomal protein L3094012535240136189Rat
6496811Lyg2lysozyme G294014114440150821Rat
1560332Lyg1lysozyme G194017112340182869Rat
708355Txndc9thioredoxin domain containing 994021181840221953Rat
735017Eif5beukaryotic translation initiation factor 5B94022276940277482Rat
1306715Rev1REV1, DNA directed polymerase94027810040351764Rat
1308527Aff3ALF transcription elongation factor 394039909940856716Rat
40935687Trnat-agu33transfer RNA threonine (anticodon AGU) 3394043234540432425Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10252D7Mit1213693513366635133728Ratregion
34090D9Mgh822393684038536840608Ratregion
34286D9Mgh614393145248931452632Ratregion
33583D9Mit927192315912623159388Ratregion
36157D9Rat3116292121837921218540Ratregion
37220D9Rat7320194004371240043913Ratregion
37416D9Rat7019092526804425268236Ratregion
37472D9Rat8724291868264518682873Ratregion
35439D9Rat3514591722047617220609Ratregion
36984D9Rat2912992566118825661317Ratregion
37604D9Rat7622893696235936962591Ratregion
37846D9Rat9424593428774534287990Ratregion
36707D9Rat3216091975163419751792Ratregion
34963D9Rat3415391836330118363454Ratregion
35164D9Rat5617693441125234411424Ratregion
35819D9Rat2614794059394440594091Ratregion
35871D9Rat3614791696139816961545Ratregion
39788D9Rat14716093836806738368227Ratregion
39890D9Rat19322191711170917111930Ratregion
39964D9Rat15022493669731836697542Ratregion
38274D9Rat5821593691945736919672Ratregion
38320D9Rat6619991704407517044281Ratregion
40738D9Rat13014092375402423754144Ratregion
38684D9Rat7823391700715217007395Ratregion
40022D9Rat15217492213332222133488Ratregion
40088D9Rat14812693897030038970426Ratregion
40282D9Rat15112593344993933450064Ratregion
38914D9Rat9111993847304738473166Ratregion
39024D9Rat5922593598952735989754Ratregion
39400D9Rat12820992554906825549279Ratregion
41928D9Rat3328691867069618670972Ratregion
42879D9Rat18120691751034817510538Ratregion
42880D9Rat18220091718628417186488Ratregion
42884D9Rat18024492411607824116997Ratregion
42884D9Rat18024492411676224116997Ratregion
42885D9Rat15715593742213437422299Ratregion
42359D9Rat19020193923576639235966Ratregion
42360D9Rat18914793958443439584583Ratregion
42361D9Rat18822693953834739538572Ratregion
41772D9Rat15824692753206327532335Ratregion
41890D9Rat19114893650327336503422Ratregion
43124D18Rat12224291957244019572673Ratregion
44547D9Got2615691758455117584707Ratregion
44560D9Got2324691756517617565422Ratregion
44561D9Got2521491784387917844093Ratregion
44562D9Got2016491730445817304622Ratregion
44563D9Got2117891766435817664536Ratregion
44564D9Got2717691875150418751680Ratregion
44565D9Got2816392191746021917623Ratregion
44566D9Got2919492236594722366141Ratregion
44567D9Wox1915692207116922071345Ratregion
44568D9Wox1620092219877322198945Ratregion
44569D9Got3024092291126422911504Ratregion
44570D9Got3123592429783724298072Ratregion
44571D9Got3215592354096823541123Ratregion
44573D9Got3315292351340323513555Ratregion
44574D9Got3519492550878925508983Ratregion
44576D9Got3916092847733428477492Ratregion
44576D9Got3916092847733428477539Ratregion
44577D9Got13127792636615726366431Ratregion
44578D9Got13025492701316827013422Ratregion
44580D9Got4016292725818127258343Ratregion
44581D9Got3826893148113931481407Ratregion
44582D9Got4312693150332431503450Ratregion
44583D9Got4521993210876432108981Ratregion
44585D9Got4115193222586932226020Ratregion
44586D9Got13219193301164133011832Ratregion
44587D9Got4614093686577336865913Ratregion
44588D9Got4729693830441538304711Ratregion
44590D9Got4416193857550538575638Ratregion
44591D9Got4919694008016640080362Ratregion
44592D9Got4822294011524940115471Ratregion
44593D9Got5028393951597639516259Ratregion
60658D9Got1924791709245217092701Ratregion
60660D9Got2421591711998617120201Ratregion
625824D9Got3620392884958728849792Ratregion
62475D1Uia414091743533817435380Ratregion
66417D9Mco126993754075537541153Ratregion
67786D9Uwm214293829996138300103Ratregion
1334445D9Wox1817892207120022071398Ratregion
1628057D9Wox3492469906124699239Ratregion
1629214D9Wox3624091752125117521491Ratregion
1638936D9Wox3814092045455120454691Ratregion
1639666D9Got2378992987871129878800Ratregion
1640746D9Got24311392803447328034586Ratregion
1634973D9Got21411893709878637098904Ratregion
1635305D9Wox3522393904047039040693Ratregion
1636311D9Got23327893746477037465048Ratregion
1636389D9Got22218192361018223610363Ratregion
1636739D9Got20324792593707025937317Ratregion
1637738D9Got22824493014382730144071Ratregion
2302957D9Mco7417792880656328806740Ratregion
7205782D2S34093493510947435110408Ratregion
7206494UniSTS:54667859592625059926251194Ratregion
7206496UniSTS:546686162293608786136089483Ratregion
7206406mMaCIR256142593807751538078940Ratregion
5039002RH12745619293708195237082144Ratregion
5036631AU04865320392166439821664601Ratregion
5028735STS-AA00978116093547862735478787Ratregion
5031416AU04839313092166027021660400Ratregion
5034041RH14113722093867621238676432Ratregion
5026284RH13162121792371141323711630Ratregion
5028907RH14277610694027294740273053Ratregion
5031946AU04660225092705763527057880Ratregion
5026652RH13302518092254406822544248Ratregion
5026706RH133222094021144840211641Ratregion
5026720RH13327520893664943536649643Ratregion
5029297RH14426425693877287138773127Ratregion
5035402BE11465118691908135619081542Ratregion
5035490BQ19602621092020793720208147Ratregion
5035496AI55524920392642078226420985Ratregion
5034890AI41049519294011198140112173Ratregion
5030061AW53182916293835587438356036Ratregion
5032811RH13538718492710161427101798Ratregion
5032851RH13672315592667406926674224Ratregion
5035182AW52658117291844626018446432Ratregion
5030167BF4011669491702919017029284Ratregion
5027671Dscr1l123091696177316962003Ratregion
5030229BE09915017393623291736233090Ratregion
5033149RH13777814892767124427671392Ratregion
502783105.MMHAP59FLB2.seq17492575758825757762Ratregion
5033217RH13801423592407546124075696Ratregion
5030677BI30170120893377549433775702Ratregion
5033625RH13951118493964622439646408Ratregion
5025642RH12910122092666795326668173Ratregion
5028374AI4621759392625035226250445Ratregion
5030969BF40522918193651566236516374Ratregion
5025788RH12966419593665903736659232Ratregion
5055011RH14355412893965315739653285Ratregion
5055051RH14357727393313108233131355Ratregion
5055849RH14403810293835720938357311Ratregion
5053981RH14296217192583163925831810Ratregion
5056759RH14456315493876815238768306Ratregion
5057416AI01043512691818241918182545Ratregion
5055331RH14374013494055523640555370Ratregion
5057854BF38626217992495736724957546Ratregion
5057868BE10160420892519117325191381Ratregion
5055625RH14390911992641428526414404Ratregion
5055117RH14361612992583780225838119Ratregion
5055165RH14364320192666544526665646Ratregion
5058694BE09699216794053781740537983Ratregion
5058848BF39371513592741625527416390Ratregion
5059652BE09754521492783064427830858Ratregion
5056151RH14421313893666043836660576Ratregion
5056731RH14454716492667508326675247Ratregion
5055737RH14397321093602650836026718Ratregion
5059906BF38819715392587915725879310Ratregion
5059994BF40023320893964293239643140Ratregion
5060010BF40026321792510442625104643Ratregion
5058520BI2906699491776795117768045Ratregion
5059106BE10283918693990122239901408Ratregion
5059194BF38762516993866037238660541Ratregion
5059196BF38762715291845461618454768Ratregion
5053401RH14262714593601833936018484Ratregion
5050098RH13386121394021198040212193Ratregion
5053915RH14292417793866062538660802Ratregion
5052909RH14234420093901667439016874Ratregion
5053071RH14243716293967261039672772Ratregion
5054335RH14316524693640489236405140Ratregion
5054537RH14328213993931040939310548Ratregion
5044034RH13037218092334861823348798Ratregion
5040900RH12854820191830290218303103Ratregion
5044482RH13062820593668684136687052Ratregion
5044658RH13073020893854675438546962Ratregion
5045018RH13093619791788009117880573Ratregion
5041392RH12883020093832247838322678Ratregion
5043888RH13028515293665908036659232Ratregion
5047464RH13234319393878050938780702Ratregion
5045056RH13095720493835530438355508Ratregion
5047658RH13245421293892894438929156Ratregion
5046676RH13189020894013554940135757Ratregion
5047974RH13263618393901146239011645Ratregion
5049284RH13339219292640846226408654Ratregion
5046796RH13195918192438759024387771Ratregion
5049338RH13342318493569259235692776Ratregion
5047010RH13208221392640732526407538Ratregion
5048360RH13285820193856220738562408Ratregion
5048370RH13286418694005599640056182Ratregion
5042436RH12943319393281172232811915Ratregion
5042502RH12947218392642015826420341Ratregion
5049602RH13357521693832228538322501Ratregion
5039450RH12771320992336180623362015Ratregion
5042054RH12921220892006983520070043Ratregion
5042730RH12961120293933234639332548Ratregion
5042748RH12962319893668975436689952Ratregion
5042782RH12964219493982808139828275Ratregion
5041172RH12870421992717784927178068Ratregion
5042920RH12972219993835746138357660Ratregion
5075262RH13849320793906989139070098Ratregion
5075426RH13858713793854739238547529Ratregion
5074158RH13785512392802514728025270Ratregion
5076158RH13901220292583162825831830Ratregion
5072586RH13693418291750967617509858Ratregion
5074576RH13809612393903246439032587Ratregion
5074636RH13813124492363225723632501Ratregion
5075868RH13884317292624997226250144Ratregion
5075018RH13835112092498637024986490Ratregion
5077482RH13978218192582476725824948Ratregion
5077508RH13979621393668832236688900Ratregion
5079384RH14096518594040239740402582Ratregion
5079608RH14109918092383357023833750Ratregion
5077814RH13997521492582557225825786Ratregion
5077960RH14006018893665977936659967Ratregion
5078214RH14021019493949364639493840Ratregion
5079838RH14123221991744092417441143Ratregion
5078112RH14015119293866203738662229Ratregion
5079014RH14068419192649007526490266Ratregion
5080084RH14137418092321925323219433Ratregion
5080258RH14147621794011372340113941Ratregion
5071078RH13487418993602307036023259Ratregion
5071406RH13506319792341930323419500Ratregion
5073660RH13756515292365209023652242Ratregion
5072950RH13714816793668975236689919Ratregion
5072008RH13541218793877346838773655Ratregion
5074234RH13789922992337484223375071Ratregion
5071444RH13508521992641709526417314Ratregion
5072330RH13678722893854905838549286Ratregion
5063444BI30180017493657692536577099Ratregion
5065088BF40576620792743809227438299Ratregion
5066598AU04826216893053725630537426Ratregion
5066774AU04815917892604071926040897Ratregion
5066972AU04804125794001339340013646Ratregion
5066974AU04804013993014211730142256Ratregion
5067106AU04796120092354095723541157Ratregion
5067488AU04771410692141073121410837Ratregion
5067612AU04764115493368780133687957Ratregion
5067680AU04760016993475965934759825Ratregion
5068108AU04734315792532724425327401Ratregion
5068268AU04724826093682489436825154Ratregion
5068402AU04716818791883681418837001Ratregion
5069780AU02875825592542014025420398Ratregion
5069796AU02800516692286245322862619Ratregion
5069268AU04660824893910002339100099Ratregion
5063502BF39896711591716404117164156Ratregion
5065308AI53519210492342457023424674Ratregion
5062256BE10640415192048170020481851Ratregion
5063810AW53527718091792447317924653Ratregion
5060926BI28698413094054183640541966Ratregion
5060170AI14476110993965177339651882Ratregion
5060280AW53109918293675174836751930Ratregion
5062162BE10629616693680446036804626Ratregion
5065264BE12131120192743797227438174Ratregion
5060528BE11029315491735917517359329Ratregion
5062272BE10646115192391450723914657Ratregion
5060734BF38905413494027921540279349Ratregion
5060936BF40140424393963704139637286Ratregion
5061002BF4016319492514322025143314Ratregion
5062632BF40362717994039930240399481Ratregion
5062678BF40378815194030712540307276Ratregion
5064372BF39914219692743024627430442Ratregion
5065994BF41302212793859662638596753Ratregion
5061064AI11289511593835794938358064Ratregion
5061106AW53234015394051964140519794Ratregion
5062924BF39802624693599531335995559Ratregion
5062970BE11351216992519182725191996Ratregion
5064758BF4050239292498314524983237Ratregion
5066502AU04831822892479531924795543Ratregion
5084148AI17627020493598550935985713Ratregion
5084362AI17667717693596689035967066Ratregion
5086855AA85998319193874129838741787Ratregion
5086187AI13730919993880590338806102Ratregion
5087054AI40639319092517378425173974Ratregion
5087307AW53158114192753162227531763Ratregion
5087468PMC195978P226193892167438921935Ratregion
5087582PMC344171P190892342610323427011Ratregion
5087789D1Bwg0491e15993901654739016706Ratregion
5089137AU04897519392943540429435599Ratregion
5088333AU04850721292624451626244726Ratregion
5088335AU04850820193388390333884104Ratregion
5083753AA80069816092383052523830685Ratregion
5088761AU04876117091838425418384424Ratregion
5084434AI23519411792341991023420027Ratregion
5090109AU04955520892423915524239185Ratregion
5090237AU04963114692397017523970321Ratregion
5090237AU04963114692397017523970479Ratregion
5090285AU04966013393905125039051383Ratregion
5082087BF40940013492709583927095973Ratregion
5085014AI01010714992038721720387366Ratregion
5085389BM39024815493835811838358272Ratregion
5085244BM38998518793343450633434693Ratregion
5088619AU04867717394012104040121211Ratregion
5081048RH14193519393680204636802239Ratregion
5085439AI17560216393645827536458438Ratregion
5090307AU04967313393658616936586302Ratregion
5089227AU04903025292754574227545996Ratregion
5089245AU04904121892262640922626629Ratregion
5082571BE11975115092743645227436602Ratregion
5080982RH14189518292342244223422624Ratregion
5084708AI17916811392625037226250485Ratregion
5082955BF39048521492510432725104541Ratregion
5082963BI28143911192047193220472043Ratregion
5085268BF28334015492582380925823963Ratregion
5083663BG38143216193700125737001418Ratregion
5085832BF38817417294054036540540537Ratregion
5503012B3gat242892616781226168240Ratregion
5503158UGCGL110893839251838393165Ratregion
5503398U2388617193783235837832529Ratregion
5504111px-6g713791930989719310034Ratregion
5506360UniSTS:478964160192660536226606963Ratregion
5506881G4720226693997422639974492Ratregion
5506975fc48d10.y146793627977436280241Ratregion
5506583AW46451710392555624825556351Ratregion
5502086MARC_3939-3940:996679197:321792323455523235166Ratregion
55027409STS0113993297052732970666Ratregion
5502975Tcfap2b47992181144221811921Ratregion
5502353RH12456518192555636125556542Ratregion
5502473RH1249838293839391038393992Ratregion
Position Markers

Flank 1: (D9Rat36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2916,961,398 - 16,961,545 (+)MAPPER
Rnor_6.0919,520,489 - 19,520,635NCBI
Rnor_5.0918,398,986 - 18,399,132UniSTS
RGSC_v3.4912,625,042 - 12,625,188UniSTS
RGSC_v3.4912,625,041 - 12,625,186RGD
RGSC_v3.1912,622,363 - 12,622,508RGD
Celera914,687,464 - 14,687,610UniSTS
RH 2.0 Map991.1RGD
SHRSP x BN Map914.0098RGD
FHH x ACI Map911.26RGD
Cytogenetic Map9q12UniSTS
Peak: (D9Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2925,268,044 - 25,268,236 (+)MAPPER
Rnor_6.0929,075,079 - 29,075,268NCBI
Rnor_5.0927,914,255 - 27,914,444UniSTS
RGSC_v3.4921,667,066 - 21,667,255RGD
RGSC_v3.4921,667,067 - 21,667,256UniSTS
RGSC_v3.1921,668,480 - 21,668,669RGD
Celera922,834,240 - 22,834,435UniSTS
RH 3.4 Map9233.3UniSTS
RH 3.4 Map9233.3RGD
RH 2.0 Map9199.9RGD
SHRSP x BN Map923.2398RGD
Cytogenetic Map9 RGD
Flank 2: (D9Rat26)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2940,593,944 - 40,594,091 (+)MAPPER
Rnor_6.0945,029,648 - 45,029,794NCBI
Rnor_5.0944,725,058 - 44,725,204UniSTS
RGSC_v3.4937,313,134 - 37,313,280UniSTS
RGSC_v3.4937,313,103 - 37,313,370RGD
RGSC_v3.1937,314,548 - 37,314,694RGD
Celera938,346,802 - 38,346,948UniSTS
RH 3.4 Map9371.7RGD
RH 3.4 Map9371.7UniSTS
RH 2.0 Map9379.8RGD
SHRSP x BN Map935.4698RGD
FHH x ACI Map926.86RGD
Cytogenetic Map9q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cm20


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Cm20  Cardiac mass QTL 20  Hw5  Heart weight QTL 5  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general SS allele associated with increased heart weight 634617