Bmd88 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd88 (Bone mineral density QTL 88) Rattus norvegicus

Symbol: Bmd88
Name: Bone mineral density QTL 88
RGD ID: 7207805
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: total volumetric bone mineral density   (CMO:0001728)    
LOD Score: 4.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2923,754,024 - 58,157,242RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0927,486,036 - 63,264,281RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0926,333,329 - 63,071,752RGDRnor5.0
RGSC_v3.4920,102,034 - 55,470,344RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
total volumetric bone mineral density  IDA 2293456update to femur specific termRGD 

Experimental Condition
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
control condition  IDA 2293456 RGD 

Measurement Method
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
ex vivo peripheral quantitative computed tomography  IDA 2293456 RGD 

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
COP/OlaHsd  IEA 2293456 RGD 
DA/OlaHsd  IEA 2293456 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
femur mineral mass  IDA 2293456 RGD 

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3983Zap70zeta chain of T cell receptor associated protein kinase 7093898975039011701Rat
619710Uggt1UDP-glucose glycoprotein glucosyltransferase 193835522938468473Rat
619768Pou3f3POU class 3 homeobox 394494587244948998Rat
70882Nab1Ngfi-A binding protein 194905357949093078Rat
61963Fhl2four and a half LIM domains 294538897945462421Rat
2844Hspe1heat shock protein family E (Hsp10) member 195658991256593000Rat
71029Col3a1collagen type III alpha 1 chain94737461147410547Rat
70994Myo1bmyosin Ib94969004349852373Rat
70948Cnga3cyclic nucleotide gated channel subunit alpha 393944753439494044Rat
3719Slc9a2solute carrier family 9 member A294293200143014447Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592383018524395984Rat
631433Prim2DNA primase subunit 293569237635904521Rat
621314Hspd1heat shock protein family D (Hsp60) member 195657919556590011Rat
727925Lgsnlengsin, lens protein with glutamine synthetase domain93341636233447919Rat
2707Glsglutaminase94934461649416900Rat
2892Il1r1interleukin 1 receptor type 194250491742580958Rat
2894Il1rl1interleukin 1 receptor-like 194266169442727266Rat
727867Il18rapinterleukin 18 receptor accessory protein94276811242800964Rat
620183Mob4MOB family member 4, phocein95661737456641336Rat
620457Stk17bserine/threonine kinase 17b95530748555338085Rat
708420Plcl1phospholipase C-like 195690157357238782Rat
620148Sf3b1splicing factor 3b, subunit 195649240356532300Rat
621738Khdrbs2KH RNA binding domain containing, signal transduction associated 293444702334953684Rat
621749Unc50unc-50 inner nuclear membrane RNA binding protein93966494439674369Rat
620180Slc40a1solute carrier family 40 member 194803352648053876Rat
620000Rims1regulating synaptic membrane exocytosis 192469695925196404Rat
621142Tsga10testis specific 1093999120340098259Rat
621147Il1r2interleukin 1 receptor type 294238428042424726Rat
621202Rpl31ribosomal protein L3194164739741651441Rat
621216Chst10carbohydrate sulfotransferase 1094109280541122737Rat
621477Eif4g2-ps1eukaryotic translation initiation factor 4, gamma 2, pseudogene 193304688433050665Rat
68386Inpp4ainositol polyphosphate-4-phosphatase type I A93952824539650574Rat
708355Txndc9thioredoxin domain containing 994021181840221953Rat
1303213Pgap1post-GPI attachment to proteins inositol deacylase 195597557456044325Rat
70921Col5a2collagen type V alpha 2 chain94744874147598134Rat
1304925Phf3PHD finger protein 393306385533136013Rat
1304927Fam135afamily with sequence similarity 135, member A92642011626500803Rat
735017Eif5beukaryotic translation initiation factor 5B94022276940277482Rat
3115Mstnmyostatin94845253348458933Rat
621584Tpp2tripeptidyl peptidase 294604671246128157Rat
621798Dnah7dynein, axonemal, heavy chain 795496023555266529Rat
1304684Poglut2protein O-glucosyltransferase 294625638846268714Rat
620608Cox5bcytochrome c oxidase subunit 5B93892198038923806Rat
1304653Ccdc115coiled-coil domain containing 11593665038436654348Rat
1305571Cnnm4cyclin and CBS domain divalent metal cation transport mediator 493871172638750942Rat
1305575Osgepl1O-sialoglycoprotein endopeptidase-like 194821499548229440Rat
3771Stat1signal transducer and activator of transcription 194941956149459969Rat
1306332Asnsd1asparagine synthetase domain containing 194812680848139073Rat
1305645Ecrg4ECRG4 augurin precursor94599295446012605Rat
1305650Mgat4aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A93967342739786747Rat
1306380Gulp1GULP PTB domain containing engulfment adaptor 194662269946899005Rat
1305865Zfp451zinc finger protein 45193598544136040991Rat
1305747Stat4signal transducer and activator of transcription 494947266049588540Rat
61970Ptp4a1protein tyrosine phosphatase 4A193321420133245046Rat
1307321Slc39a10solute carrier family 39 member 1095483684154960325Rat
1306558Mrps9mitochondrial ribosomal protein S994511355445172375Rat
1304775Ccdc150coiled-coil domain containing 15095579354455897341Rat
1306658Nabp1nucleic acid binding protein 195009855250133982Rat
621782Il1rl2interleukin 1 receptor-like 294259165842639351Rat
1307380Actr1bactin related protein 1B93892881938938483Rat
1308460Rnf149ring finger protein 14994182682541854381Rat
1308527Aff3ALF transcription elongation factor 394039909940856716Rat
1306566Dstdystonin93613565736529617Rat
1306715Rev1REV1, DNA directed polymerase94027810040351764Rat
1306071Inpp1inositol polyphosphate-1-phosphatase94868803748717793Rat
1309276Prss39protease, serine, 3993669503736713004Rat
1311041Arid5aAT-rich interaction domain 5A93853461238549467Rat
1310398Ankrd23ankyrin repeat domain 2393877323438778705Rat
1308392Hibch3-hydroxyisobutyryl-CoA hydrolase94859009748669896Rat
1306867Rab23RAB23, member RAS oncogene family93594352235967367Rat
1310819CracdlCRACD like93983432139950763Rat
1311888Bivmbasic, immunoglobulin-like variable motif containing94626875846305038Rat
1310772Tgfbrap1transforming growth factor, beta receptor associated protein 194532097545371329Rat
1311586Ptpn18protein tyrosine phosphatase, non-receptor type 1893667232536689963Rat
1309049RGD1309049similar to RIKEN cDNA 4933415F2392553116525532798Rat
1311527Mars2methionyl-tRNA synthetase 2, mitochondrial95672040856729991Rat
1559504Ankrd39ankyrin repeat domain 3993878029138790177Rat
1309425Col9a1collagen type IX alpha 1 chain92658503426668222Rat
2300146Ormdl1ORMDL sphingolipid biosynthesis regulator 194824336548253316Rat
1309266Tmem131transmembrane protein 13193901647039162841Rat
1307700Mitd1microtubule interacting and trafficking domain containing 194011394340125280Rat
1309218Hs6st1heparan sulfate 6-O-sulfotransferase 193828350238322684Rat
1309220Kansl3KAT8 regulatory NSL complex subunit 393856217038605757Rat
1308463Imp4IMP U3 small nucleolar ribonucleoprotein 493665412736659265Rat
1310392Bend6BEN domain containing 693608103336135309Rat
1309095Tex30testis expressed 3094624341646252273Rat
1310954Plekhb2pleckstrin homology domain containing B293704958037082231Rat
1305965Nck2NCK adaptor protein 294571397945840330Rat
1308196Mrpl30mitochondrial ribosomal protein L3094012535240136189Rat
1307304Rftn2raftlin family member 295665161756707830Rat
1306253Gpr45G protein-coupled receptor 4594522136445309713Rat
1308589Il18r1interleukin 18 receptor 194272741642760971Rat
1309681Npas2neuronal PAS domain protein 294146336141642322Rat
1305322Map4k4mitogen-activated protein kinase kinase kinase kinase 494220070842326708Rat
1308839Tmeff2transmembrane protein with EGF-like and two follistatin-like domains 295044594750733473Rat
1310276Lipt1lipoyltransferase 194010793840118268Rat
1311393Lman2llectin, mannose-binding 2-like93866170938685244Rat
1308920Col19a1collagen type XIX alpha 1 chain92667391627022139Rat
1307926Cnnm3cyclin and CBS domain divalent metal cation transport mediator 393875537438770740Rat
1309663Pdcl3phosducin-like 394123432241243769Rat
1309185Gtf3c3general transcription factor IIIC subunit 395588225255943037Rat
1308498Ogfrl1opioid growth factor receptor-like 192582886525842424Rat
1310553RGD1310553similar to expressed sequence AI59747994537139645382123Rat
1359633Neurl3neuralized E3 ubiquitin protein ligase 393849448638503352Rat
1563696Tmem182transmembrane protein 18294305943243111318Rat
1560909Cnot11CCR4-NOT transcription complex, subunit 1194181492341824626Rat
1562137Lonrf2LON peptidase N-terminal domain and ring finger 294103312541070551Rat
1564591Fam178bfamily with sequence similarity 178, member B93880586438913681Rat
1562560Vwa3bvon Willebrand factor A domain containing 3B93924952339419614Rat
620903B3gat2beta-1,3-glucuronyltransferase 292616717426250153Rat
1562461Rplp1-ps1ribosomal protein lateral stalk subunit P1, pseudogene 193684993236855302Rat
1561618Rpl23-ps2ribosomal protein L23,pseudogene 295014337250154483Rat
1562212Mfsd9major facilitator superfamily domain containing 994301961143039100Rat
1560420Amer3APC membrane recruitment protein 393679035536802341Rat
1560421Nemp2nuclear envelope integral membrane protein 294886125248880565Rat
1564447RGD1564447similar to Zgc:5619394249400742495112Rat
1562317Mfsd6major facilitator superfamily domain containing 694877317148858471Rat
1560806Golph3l-ps1golgi phosphoprotein 3-like, pseudogene 194589049245891363Rat
1560533Rps14-ps2ribosomal protein S14, pseudogene 293715329037153723Rat
1561893Ankrd44ankyrin repeat domain 4495612674656427661Rat
1562067RGD1562067similar to cell division cycle associated 394650653346507525Rat
3721Slc9a4solute carrier family 9 member A494282533442879729Rat
1359509Coq10bcoenzyme Q10B95655375156573671Rat
1359511Pms1PMS1 homolog 1, mismatch repair system component94822940348340237Rat
1359345Cavin2caveolae associated protein 295030207950314096Rat
1560724Rfx8regulatory factor X894195758942021432Rat
1562818Rpl35-ps10ribosomal protein L35, pseudogene 1094487377244874628Rat
1561425Mettl21cmethyltransferase 21C, AARS1 lysine94613045146145128Rat
1309703Adgrb3adhesion G protein-coupled receptor B392742116828148979Rat
1561071Ankarankyrin and armadillo repeat containing94814153448215400Rat
1359122NMSneuromedin S94116963441180697Rat
1560362Arpc5l-ps1actin related protein 2/3 complex, subunit 5-like, pseudogene 194526335245264349Rat
1562837Sema4csemaphorin 4C93879166838802171Rat
1564869Wdr75WD repeat domain 7594790321447933399Rat
1559527Bollboule homolog, RNA binding protein95673489056859917Rat
1559965Wbp11-ps5WW domain binding protein 11, pseudogene 593076218030763745Rat
1564056Creg2cellular repressor of E1A-stimulated genes 294187200041945413Rat
708471Lmbrd1LMBR1 domain containing 192709638727178095Rat
1562143RGD1562143similar to Ctps protein94780217747803574Rat
1560332Lyg1lysozyme G194017112340182869Rat
1586396Ube2v1-ps22ubiquitin conjugating enzyme E2 V1, pseudogene 2293363377033634238Rat
1586604Tmem258btransmembrane protein 258 B95645037356450755Rat
1562188Cfc1cripto, FRL-1, cryptic family 193674210636751931Rat
1565402Gsta6glutathione S-transferase alpha 692374326223806260Rat
1561330Prss40protease, serine, 4093676217036770979Rat
1583985Fam168bfamily with sequence similarity 168, member B93700556937038631Rat
1584383Rps3-ps8ribosomal protein S3, pseudogene 894711540647116385Rat
1565095Coa5cytochrome C oxidase assembly factor 593965145939664870Rat
1565371Bnip3-ps1BCL2 interacting protein 3, pseudogene 194876280448764417Rat
1586327Fus-ps6FUS RNA binding protein, pseudogene 693554914035550782Rat
1590803Rpl11-ps6ribosomal protein L11, pseudogene 695646902356469614Rat
1590804Eno1-ps2enolase 1, pseudogene 295473030254750752Rat
1590805Clip1-ps1CAP-GLY domain containing linker protein 1, pseudogene 195409906354102686Rat
1590806Cct6a-ps1chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 195333839953339815Rat
1590809Trir-ps2telomerase RNA component interacting RNase, pseudogene 293567960735690156Rat
1587872Pals1-ps1protein associated with LIN7 1, MAGUK p55 family member, pseudogene 195450025654502541Rat
1591348Mettl6-ps1methyltransferase like 6, pseudogene 195151474651515605Rat
1590775Hmgb1-ps21high-mobility group box 1, pseudogene 2193182950531830438Rat
1590771Nono-ps13non-POU domain containing, octamer-binding, pseudogene 1395304950253055409Rat
1590772Hspd1-ps13heat shock protein family D (Hsp60) member 1, pseudogene 1394699145746996798Rat
1585200Cfl2-ps2cofilin-2, pseudogene 293593445635934941Rat
1585173Bag2BAG cochaperone 293597003335980677Rat
1586666LOC686030hypothetical protein LOC68603095594580655949855Rat
1588998Sdhaf4succinate dehydrogenase complex assembly factor 492640833226416478Rat
1586777Snrpd1-ps1small nuclear ribonucleoprotein D1 polypeptide, pseudogene 192555610225556765Rat
1586176Ercc5ERCC excision repair 5, endonuclease94630947746354478Rat
1586177Dnajc14-ps2DnaJ heat shock protein family (Hsp40) member C14, pseudogene 294617746346179852Rat
1586179Arhgef4Rho guanine nucleotide exchange factor 493686180037005079Rat
1586180p53-psWistar clone pR53P1 p53 pseudogene92381058023812111Rat
1583681Fer1l5fer-1-like family member 593860583538661869Rat
1597396Khdc1KH domain containing 192381244223814932Rat
1595308Smc6-ps1structural maintenance of chromosomes 6, pseudogene 194852114648522274Rat
1596736Mettl21cl1methyltransferase like 21C-like 194638214146397299Rat
1596202Khdc1bKH domain containing 1B92382199323827647Rat
1592054Hsp90ab1-ps13heat shock protein 90 alpha family class B member 1, pseudogene 1394554506345547427Rat
1592055Hnrnpa1-ps17heterogeneous nuclear ribonucleoprotein A1, pseudogene 1793240353632405287Rat
1588763LOC689725similar to chromosome 9 open reading frame 7992899323128999521Rat
1593244Hecw2HECT, C2 and WW domain containing E3 ubiquitin protein ligase 295535946255753106Rat
1595408Ahcy-ps5adenosylhomocysteinase, pseudogene 594702399047025181Rat
1585595Smap1small ArfGAP 192625017826342151Rat
1591063Rpl11-ps11ribosomal protein L11, pseudogene 1192722390727224465Rat
1594773Hnrnpc-ps2heterogeneous nuclear ribonucleoprotein C, pseudogene 292537089225371782Rat
1595491Tbc1d8TBC1 domain family, member 894165139441761432Rat
1588705Dnajb6-ps6DnaJ heat shock protein family (Hsp40) member B6, pseudogene 693279874632799447Rat
1586334LOC689966similar to zinc finger protein 62293547860335480175Rat
1597774LOC685108similar to proteolipid protein 294807677548077809Rat
1596493LOC685203hypothetical protein LOC68520394853914048584882Rat
1596442Pgap2-ps2post-GPI attachment to proteins 2, pseudogene 294874157148760802Rat
2318113Zfp706-ps1zinc finger protein 706, pseudogene 193297066932970915Rat
2318365Rplp1-ps3ribosomal protein lateral stalk subunit P1, pseudogene 392906258729063019Rat
2318998Cacybp-ps1calcyclin binding protein, pseudogene 195431312554313795Rat
2320919Rps8-ps5ribosomal protein S8, pseudogene 594372584043726444Rat
2321066Cox6a1-ps2cytochrome c oxidase subunit 6A1, pseudogene 294216974742170079Rat
2323350Got2-ps3glutamic-oxaloacetic transaminase 2, pseudogene 394799538648000701Rat
2323511Cct6a-ps16chaperonin containing TCP1 subunit 6A, pseudogene 1695325090653252183Rat
2323628Tmem19-ps1transmembrane protein 19, pseudogene 195275207852753081Rat
2323675Cyb5d1-ps1cytochrome b5 domain containing 1, pseudogene 195240881552409577Rat
2323836Ccdc126-ps1coiled-coil domain containing 126, pseudogene 195124491251245507Rat
2323882Psme1-ps2proteasome activator subunit 1, pseudogene 292729459227295842Rat
2325587Mir30c2microRNA 30c-292575734225757425Rat
2325588Mir30amicroRNA 30a92573760025737670Rat
6489933Spata31e1SPATA31 subfamily E, member 193109855731104212Rat
6484877Hdac1-ps10Histone deacetylase 1, pseudogene 1093817277738173577Rat
6486560Srsf7-ps4serine and arginine rich splicing factor 7, pseudogene 494858786548589638Rat
6487672Dppa3-ps5developmental pluripotency-associated 3, pseudogene 594888215848883075Rat
6501804Rpl12-ps4ribosomal protein L12, pseudogene 494999652149997143Rat
6498974Nelfe-ps1negative elongation factor complex member E, pseudogene 195422936854231747Rat
6499281LOC100910304uncharacterized LOC10091030494345148443528710Rat
6496811Lyg2lysozyme G294014114440150821Rat
6500396Eef1a1-ps1eukaryotic translation elongation factor 1 alpha 1, pseudogene 193380476333825540Rat
6500780Swi5-ps1SWI5 homologous recombination repair protein, pseudogene 193563369035641769Rat
6501168LOC100909859uncharacterized LOC10090985993894392738984878Rat
6501582LOC100909803uncharacterized LOC10090980393848109638488323Rat
7500673LOC102554222uncharacterized LOC10255422293850255338512621Rat
7517566LOC102547518uncharacterized LOC10254751894494386545040196Rat
7613346LOC102549950uncharacterized LOC10254995094373934443744575Rat
7647959LOC102551615uncharacterized LOC10255161593623287736236460Rat
7637214LOC102554281uncharacterized LOC10255428193185543031907027Rat
7638136LOC102551518uncharacterized LOC10255151893663661736646847Rat
7640284Aasdhppt-ps1aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, pseudogene 195073524950746852Rat
7590823LOC102548289uncharacterized LOC10254828993322266233247053Rat
7543919Npm1-ps7nucleophosmin 1, pseudogene 795056244350587615Rat
7580017LOC102553447uncharacterized LOC10255344792650725926562437Rat
7688151Pantr1POU3F3 adjacent non-coding transcript 194489833844943631Rat
7667713LOC102547455uncharacterized LOC10254745594495584944963305Rat
7728653LOC102554996uncharacterized LOC10255499693933222239334749Rat
7680407Ccdc168coiled-coil domain containing 16894619823446236325Rat
7729430LOC102554152uncharacterized LOC10255415293005567730066038Rat
7680988LOC102555515uncharacterized LOC10255551593738719437388717Rat
9179481LOC103690547glycine cleavage system H protein, mitochondrial pseudogene95663505656636545Rat
9182814LOC103690528uncharacterized LOC10369052894497453944981088Rat
9201972LOC103690517uncharacterized LOC10369051793982797539832408Rat
9295055LOC103690525uncharacterized LOC10369052594293496542943357Rat
9363755LOC103690510ADP-ribosylation factor-like protein 3 pseudogene92677224326773400Rat
9346435LOC103690550uncharacterized LOC10369055094968777449689862Rat
11368267LOC108351906ferritin light chain 1 pseudogene92394529823945851Rat
11362092LOC108351929uncharacterized LOC10835192995048922750559755Rat
11365616Hsp90ab1-ps20heat shock protein 90 alpha family class B member 1, pseudogene 2092877386328789378Rat
11433865LOC108351918uncharacterized LOC10835191894202017642025870Rat
11468746LOC108352000glyceraldehyde-3-phosphate dehydrogenase pseudogene95808334958084426Rat
11472363LOC108351922thymosin beta-10 pseudogene94554465545544831Rat
11474459LOC108352026high mobility group protein B1 pseudogene94921481949215542Rat
11443911LOC108352023uncharacterized LOC10835202394130423141307924Rat
11444069Trnae-uuc5transfer RNA glutamic acid (anticodon UUC) 593664787436647945Rat
11436408LOC10835192460S ribosomal protein L37 pseudogene94828521248287989Rat
11444870LOC108351925glyceraldehyde-3-phosphate dehydrogenase pseudogene94927239849273479Rat
11446793LOC10835202740S ribosomal protein S28-like95151597051516251Rat
11447044Hmgb1-ps24high-mobility group box 1, pseudogene 2494639770746398530Rat
11451021LOC108351999protein transport protein Sec61 subunit gamma pseudogene94130267341303608Rat
11365277LOC108351926thymosin beta-10 pseudogene94997482349975501Rat
11452400LOC108351921uncharacterized LOC10835192194395688644145114Rat
11372666LOC108352021uncharacterized LOC10835202192965376329662453Rat
11390134LOC108351933uncharacterized LOC10835193395707161657113442Rat
11391487LOC108351932uncharacterized LOC10835193295632554556333506Rat
11382578LOC108352025uncharacterized LOC10835202594417329344246711Rat
11383155LOC10835193160S ribosomal protein L31 pseudogene95583391155834622Rat
11495887LOC108352024uncharacterized LOC10835202494358788243617987Rat
11497442LOC10835202060S ribosomal protein L23a pseudogene92589741325897934Rat
41234631LOC120094970U6 spliceosomal RNA95042574950425855Rat
41205098LOC120094876U7 small nuclear RNA93481841034818473Rat
41277081LOC120094671uncharacterized LOC12009467194147413741475046Rat
41114033LOC120094663uncharacterized LOC12009466393692366936928337Rat
41385295LOC120094953U1 spliceosomal RNA95544593655446103Rat
41115964LOC120094668uncharacterized LOC12009466893891376938918495Rat
41280595LOC120094655uncharacterized LOC12009465593084836330925836Rat
41327220LOC120094983U6 spliceosomal RNA95303196253032064Rat
41360059LOC120094669uncharacterized LOC12009466993969766939727620Rat
41117169LOC120094931small nucleolar RNA SNORA1793353951733539639Rat
41174017AsdurfASNSD1 upstream open reading frame94812680848136134Rat
41327919LOC120094657uncharacterized LOC12009465793177815331826103Rat
41361104LOC120094670uncharacterized LOC12009467094139821741414897Rat
41388092Rps18-ps7ribosomal protein S18, pseudogene 793604717836048807Rat
41093670LOC120094674uncharacterized LOC12009467494211183542117297Rat
41147243Mrpl30-ps7mitochondrial ribosomal protein L30, pseudogene 794603925946045901Rat
41148042LOC120094654uncharacterized LOC12009465492906174329088506Rat
41096110LOC120094846uncharacterized LOC12009484695393716753958318Rat
41096174LOC120094665uncharacterized LOC12009466593813057338137099Rat
41096178Rps7-ps13ribosomal protein S7, pseudogene 1395087190650872667Rat
41119832LOC120094916U1 spliceosomal RNA93707511237075272Rat
41262561LOC120094978U6 spliceosomal RNA92866414928664255Rat
41331243LOC12009465260S ribosomal protein L29-like92617586926176521Rat
41332032LOC120094976U6 spliceosomal RNA94606065646060762Rat
41178156LOC120094869U6 spliceosomal RNA93391259533912698Rat
41263247LOC120094658uncharacterized LOC12009465893319276933212691Rat
41366852LOC120094941small nucleolar RNA SNORA1792887119028871294Rat
41098019LOC120094921small nucleolar RNA SNORA1794192134041921468Rat
41123000LOC120094847uncharacterized LOC12009484795398840053993546Rat
41154104Rcbtb1-ps1RCC1 and BTB domain containing protein 1, pseudogene 193677613336790749Rat
41180480LOC120094929small nucleolar RNA SNORA1795209028852090429Rat
41190690LOC120094844uncharacterized LOC12009484493803119438033635Rat
41288307LOC120094676uncharacterized LOC12009467694311709643119324Rat
41102534LOC120094893small nucleolar RNA SNORA5193674634636746464Rat
41125672LOC120094794uncharacterized LOC12009479495690850256915395Rat
41290364LOC120094862U6 spliceosomal RNA93796214137962247Rat
41346670LOC120094661thymosin beta-10-like93683736136852737Rat
41128029LOC120094972U6 spliceosomal RNA94688023246880338Rat
41158924LOC120094650uncharacterized LOC12009465092555150625649126Rat
41107238LOC120094913small nucleolar RNA SNORA1793733515037335272Rat
41130776Rnf149-ps2ring finger protein 149, pseudogene 294182906241830546Rat
41163881LOC120094904small nucleolar RNA SNORA4894092276640922908Rat
41272762LOC120094675uncharacterized LOC12009467594246667042468248Rat
41107517LOC120094903small nucleolar RNA SNORA4895032157750321728Rat
40944792Hnrnpa1-ps34heterogeneous nuclear ribonucleoprotein A1, pseudogene 3494524630645247422Rat
41015968LOC120094683uncharacterized LOC12009468395017283950187261Rat
40976196LOC120094959U2 spliceosomal RNA95257495452575147Rat
40953087LOC120094845uncharacterized LOC12009484594115019541158172Rat
40955717LOC120094934small nucleolar RNA SNORA1793085867830858801Rat
40930299LOC120094687uncharacterized LOC12009468795589813955908168Rat
40982266Ube2i-ps5ubiquitin-conjugating enzyme E2I, pseudogene 593598239035984367Rat
40932165LOC120094656uncharacterized LOC12009465693124350231265028Rat
41003253LOC120094677uncharacterized LOC12009467794452142544577442Rat
41006317LOC120094678uncharacterized LOC12009467894459919444629263Rat
40935687Trnat-agu33transfer RNA threonine (anticodon AGU) 3394043234540432425Rat
40985982LOC120094666uncharacterized LOC12009466693849105438491752Rat
40938309LOC120094673uncharacterized LOC12009467394184608641852700Rat
40964348LOC120094962U2 spliceosomal RNA92765647227656615Rat
40967698LOC120094681uncharacterized LOC12009468194630592746309179Rat
40971008LOC120094685uncharacterized LOC12009468595484227554876577Rat
41242603LOC120094662uncharacterized LOC12009466293703746337047132Rat
41312543Trnaa-agc41transfer RNA alanine (anticodon AGC) 4193930165739301729Rat
41024403LOC120094664uncharacterized LOC12009466493812136838165876Rat
41075746LOC120094680uncharacterized LOC12009468094602620946037049Rat
41049662LOC120094686uncharacterized LOC12009468695533793455363100Rat
41333059LOC120094922small nucleolar RNA SNORA1793733552637335650Rat
41053977LOC120094930small nucleolar RNA SNORA1794512781245127930Rat
41255525LOC120094653uncharacterized LOC12009465392814930428154124Rat
41057302LOC120094866U6 spliceosomal RNA92973260929732713Rat
41057709LOC120094649uncharacterized LOC12009464992559278325615957Rat
41220839LOC120094964U2 spliceosomal RNA94757283347572962Rat
41059212Rbx1-ps1ring-box 1, pseudogene 192576451325773891Rat
41298570LOC120094923small nucleolar RNA SNORA1794839195548392087Rat
41300716LOC120094969U4 spliceosomal RNA95031778850317913Rat
41062037LOC120094908small nucleolar RNA SNORA4893364748933647629Rat
41036328LOC120094966U4 spliceosomal RNA93898235938982474Rat
41227410LOC120094898U11 spliceosomal RNA92856277828562911Rat
41016240LOC120094944small nucleolar RNA SNORD8994182797241828086Rat
41017258LOC120094982U6 spliceosomal RNA93029237930292485Rat
41038988LOC120094971U6 spliceosomal RNA94112322841123334Rat
41039806Rpl10a-ps8ribosomal protein L10A, pseudogene 892578826125791426Rat
41065030LOC120094660uncharacterized LOC12009466093664695436649913Rat
41042201LOC120094965U4 spliceosomal RNA92844600728446144Rat
41019548LOC120094961U2 spliceosomal RNA94558722445587387Rat
41044195LOC120094935small nucleolar RNA SNORA1792569842425698531Rat
41240104LOC120094963U2 spliceosomal RNA93993229239932472Rat
41074009Trnaa-agc29transfer RNA alanine (anticodon AGC) 2995010982550109905Rat
41240384LOC120094843uncharacterized LOC12009484392588909425898507Rat
41309604LOC120094659uncharacterized LOC12009465993604918836050156Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10252D7Mit1213693513366635133728Ratregion
10658D9Wox1518494941569249415876Ratregion
33979D9Mit420494243579742436001Ratregion
34090D9Mgh822393684038536840608Ratregion
34286D9Mgh614393145248931452632Ratregion
34413D9Mgh315094077390540774051Ratregion
36388D10Mgh2617994758474747584926Ratregion
37220D9Rat7320194004371240043913Ratregion
37416D9Rat7019092526804425268236Ratregion
37530D9Rat10421694535995545360171Ratregion
36984D9Rat2912992566118825661317Ratregion
37604D9Rat7622893696235936962591Ratregion
37846D9Rat9424593428774534287990Ratregion
36582D9Rat2117294920974149209920Ratregion
34862D9Rat2315495641096256411096Ratregion
35010D9Rat2416894920978849209967Ratregion
35164D9Rat5617693441125234411424Ratregion
35575D9Rat2213595503543555035576Ratregion
35819D9Rat2614794059394440594091Ratregion
35833D9Rat2014195006217650062324Ratregion
39608D9Rat12413294286492442865057Ratregion
39706D9Rat12220095701844457018665Ratregion
39788D9Rat14716093836806738368227Ratregion
39812D9Rat12520394293041942930620Ratregion
39872D9Rat11920895107333651073542Ratregion
39964D9Rat15022493669731836697542Ratregion
38274D9Rat5821593691945736919672Ratregion
40738D9Rat13014092375402423754144Ratregion
38716D9Rat6014794803593448036057Ratregion
40088D9Rat14812693897030038970426Ratregion
40282D9Rat15112593344993933450064Ratregion
40304D9Rat12114095099769550997861Ratregion
38914D9Rat9111993847304738473166Ratregion
39024D9Rat5922593598952735989754Ratregion
39246D9Rat6323794279151342791750Ratregion
39362D9Rat9220494996854649968732Ratregion
39400D9Rat12820992554906825549279Ratregion
42251D9Arb740094292073042921101Ratregion
42884D9Rat18024492411607824116997Ratregion
42884D9Rat18024492411676224116997Ratregion
42885D9Rat15715593742213437422299Ratregion
42359D9Rat19020193923576639235966Ratregion
42360D9Rat18914793958443439584583Ratregion
42361D9Rat18822693953834739538572Ratregion
40888D9Rat12720394077391640774115Ratregion
40916D9Rat12322495815701458157242Ratregion
41088D9Rat12020895314156553141785Ratregion
41772D9Rat15824692753206327532335Ratregion
41890D9Rat19114893650327336503422Ratregion
44570D9Got3123592429783724298072Ratregion
44574D9Got3519492550878925508983Ratregion
44576D9Got3916092847733428477492Ratregion
44576D9Got3916092847733428477539Ratregion
44577D9Got13127792636615726366431Ratregion
44578D9Got13025492701316827013422Ratregion
44580D9Got4016292725818127258343Ratregion
44581D9Got3826893148113931481407Ratregion
44582D9Got4312693150332431503450Ratregion
44583D9Got4521993210876432108981Ratregion
44585D9Got4115193222586932226020Ratregion
44586D9Got13219193301164133011832Ratregion
44587D9Got4614093686577336865913Ratregion
44588D9Got4729693830441538304711Ratregion
44590D9Got4416193857550538575638Ratregion
44591D9Got4919694008016640080362Ratregion
44592D9Got4822294011524940115471Ratregion
44593D9Got5028393951597639516259Ratregion
44594D9Got5114694177059141770737Ratregion
44596D9Got5329894405463344054931Ratregion
44599D9Got5211894350314643503264Ratregion
44600D9Got5513594317266343172798Ratregion
44601D9Wox39894565985345659954Ratregion
44602D9Got5818395260444052604625Ratregion
44603D9Wox1424295305993353060173Ratregion
44604D9Got6021295660337256603584Ratregion
44605D9Got5922395654765856547881Ratregion
44606D9Got6213795710749157107628Ratregion
44607D9Got6118795808840058088587Ratregion
60664D9Got5419394501696345017156Ratregion
60666D9Got5727795411829754118571Ratregion
625824D9Got3620392884958728849792Ratregion
61288D9Uia917994249516442495343Ratregion
66388D9Mco1026295367008853670350Ratregion
66417D9Mco126993754075537541153Ratregion
66421D9Mco220095644711656447294Ratregion
66550D9Uia824795648057156480818Ratregion
67305D9Arb838594292072642921111Ratregion
67786D9Uwm214293829996138300103Ratregion
1632116D9Got22715194128937841289529Ratregion
1627106D9Mco2522894292667042926898Ratregion
1627424D9Mco2620994283101742831226Ratregion
1628057D9Wox3492469906124699239Ratregion
1629188D9Got21117594322459743224774Ratregion
1629282D9Wox1327895723740357237681Ratregion
1638988D9Got23915694929512749295283Ratregion
1639666D9Got2378992987871129878800Ratregion
1640697D9Wox3719094292668742926877Ratregion
1640746D9Got24311392803447328034586Ratregion
1634973D9Got21411893709878637098904Ratregion
1635305D9Wox3522393904047039040693Ratregion
1636264D9Got21720095404582754046027Ratregion
1636311D9Got23327893746477037465048Ratregion
1636739D9Got20324792593707025937317Ratregion
1637738D9Got22824493014382730144071Ratregion
2302881D9Mco7324895068715250687400Ratregion
2302903D9Mco7924195718945557189696Ratregion
2302905D9Mco7220794790220847902417Ratregion
2302909D9Mco8019495740292457403118Ratregion
2302913D9Mco7621695662771356627933Ratregion
2302929D9Mco7817395689781656897989Ratregion
2302939D9Mco8119195750480057504991Ratregion
2302957D9Mco7417792880656328806740Ratregion
2302963D9Mco7717795677711256777289Ratregion
2302967D9Mco7595652412256524338Ratregion
7205944Pou3f140094494689844947298Ratregion
7205990UniSTS:53130710994738401147384727Ratregion
7206036Bnip322294876389648764118Ratregion
7205782D2S34093493510947435110408Ratregion
7206494UniSTS:54667859592625059926251194Ratregion
7206496UniSTS:546686162293608786136089483Ratregion
5038810RH12734621595496048554960700Ratregion
5036203D1Ncl318594933205249332237Ratregion
5038904RH12739922095530759555307815Ratregion
7206406mMaCIR256142593807751538078940Ratregion
7206624Pou3f3109094494772244948812Ratregion
7206688UniSTS:54753922495030327950303503Ratregion
5039002RH12745619293708195237082144Ratregion
5033875RH14044613294783051047830642Ratregion
5028735STS-AA00978116093547862735478787Ratregion
5034041RH14113722093867621238676432Ratregion
5034191RH14171220494211699442117198Ratregion
5028907RH14277610694027294740273053Ratregion
5029003RH14314510994532200245322111Ratregion
5034490BF41582514295057023150570373Ratregion
5026542RH13260917094909284849093018Ratregion
5029171RH14378414394168491741686374Ratregion
5031946AU04660225092705763527057880Ratregion
5034578BE11981515094084764140847791Ratregion
5026706RH133222094021144840211641Ratregion
5026720RH13327520893664943536649643Ratregion
5029297RH14426425693877287138773127Ratregion
5034724BF39162112095043516150435281Ratregion
5032199AF07734712994279825542798384Ratregion
5035496AI55524920392642078226420985Ratregion
5027123SGC3215615094526335945263509Ratregion
5027187AI59747913094538183945381969Ratregion
5029801BF39396813395538007155380204Ratregion
5032633RH13472620994871755148717760Ratregion
5032689RH13493420395530683055307033Ratregion
5034890AI41049519294011198140112173Ratregion
5030029BF4009099095594644755946537Ratregion
5030061AW53182916293835587438356036Ratregion
5032811RH13538718492710161427101798Ratregion
5032851RH13672315592667406926674224Ratregion
5030229BE09915017393623291736233090Ratregion
5033149RH13777814892767124427671392Ratregion
502783105.MMHAP59FLB2.seq17492575758825757762Ratregion
5030411BE10622118394187201841872201Ratregion
5033217RH13801423592407546124075696Ratregion
5033275RH13823518295556483155565013Ratregion
5025408RH12820015095665319556653345Ratregion
5030677BI30170120893377549433775702Ratregion
5025472RH12845321994124188441242103Ratregion
5028069U2729515194871762148717772Ratregion
5028079U4700810094909028249090382Ratregion
5030813BE12031316994182506441825233Ratregion
5033625RH13951118493964622439646408Ratregion
5025642RH12910122092666795326668173Ratregion
5028354D1S286227594629463746296180Ratregion
5028374AI4621759392625035226250445Ratregion
5028376AU04593412594232503642325161Ratregion
5030905BE10807516494169510941695273Ratregion
5030969BF40522918193651566236516374Ratregion
5025788RH12966419593665903736659232Ratregion
5051929RH9474011294257224942572361Ratregion
5052081RH9482922994271653042716759Ratregion
5055011RH14355412893965315739653285Ratregion
5055051RH14357727393313108233131355Ratregion
5051290RH13454820994538177145381980Ratregion
5055849RH14403810293835720938357311Ratregion
5053981RH14296217192583163925831810Ratregion
5056759RH14456315493876815238768306Ratregion
5051931RH9474111094257806642578177Ratregion
5054075RH14301611195495791754958028Ratregion
5055331RH14374013494055523640555370Ratregion
5054733RH14339413394184394841844081Ratregion
5057854BF38626217992495736724957546Ratregion
5057868BE10160420892519117325191381Ratregion
5055489RH14383117294628342946283601Ratregion
5055625RH14390911992641428526414404Ratregion
5054883RH14347914394939532149395464Ratregion
5055117RH14361612992583780225838119Ratregion
5055165RH14364320192666544526665646Ratregion
5056217RH14425123595597107355971309Ratregion
5058694BE09699216794053781740537983Ratregion
5058848BF39371513592741625527416390Ratregion
5059652BE09754521492783064427830858Ratregion
5056151RH14421313893666043836660576Ratregion
5056731RH14454716492667508326675247Ratregion
5052345X5798317394741034147410514Ratregion
5052428AU044539095303611153036345Ratregion
5055379RH14376715795661787556618032Ratregion
5055737RH14397321093602650836026718Ratregion
5052907RH14234315894164208741642245Ratregion
5053083RH14244415994741030547410464Ratregion
5059906BF38819715392587915725879310Ratregion
5059994BF40023320893964293239643140Ratregion
5060010BF40026321792510442625104643Ratregion
5049964RH13378321595657548456575699Ratregion
5052390D1Mit173.115994373520343735362Ratregion
5059106BE10283918693990122239901408Ratregion
5059194BF38762516993866037238660541Ratregion
5053401RH14262714593601833936018484Ratregion
5057684BF39257120594147505341475258Ratregion
5057708BF39261219594488944144889636Ratregion
5053661RH14277814395597506655975209Ratregion
5050098RH13386121394021198040212193Ratregion
5051034RH13439920194741015847410359Ratregion
5053915RH14292417793866062538660802Ratregion
5053923RH14292923394495369344953927Ratregion
5050180RH13390820495030250350302705Ratregion
5052909RH14234420093901667439016874Ratregion
5053071RH14243716293967261039672772Ratregion
5054335RH14316524693640489236405140Ratregion
5054537RH14328213993931040939310548Ratregion
5053295RH14256617495066394950664123Ratregion
5044230RH13048421195612688456127095Ratregion
5043380RH12999221894219964142199859Ratregion
5043414RH13001219194793308547933276Ratregion
5043510RH13006619194532101445321205Ratregion
5044256RH13049918695649120956491395Ratregion
5044482RH13062820593668684136687052Ratregion
5044658RH13073020893854675438546962Ratregion
5041392RH12883020093832247838322678Ratregion
5043888RH13028515293665908036659232Ratregion
5044284RH13051419094301966743019857Ratregion
5047464RH13234319393878050938780702Ratregion
5045056RH13095720493835530438355508Ratregion
5047638RH13244218494109296841093152Ratregion
5047658RH13245421293892894438929156Ratregion
5049010RH13323420394124238541242588Ratregion
5046676RH13189020894013554940135757Ratregion
5047894RH13259018695694963956949825Ratregion
5047974RH13263618393901146239011645Ratregion
5049284RH13339219292640846226408654Ratregion
5049298RH13340015094858878748588937Ratregion
5046796RH13195918192438759024387771Ratregion
5046912RH13202621094886132348861533Ratregion
5049338RH13342318493569259235692776Ratregion
5047010RH13208221392640732526407538Ratregion
5047096RH13213118694230063742300823Ratregion
5047324RH13226218994530927145309460Ratregion
5048360RH13285820193856220738562408Ratregion
5048370RH13286418694005599640056182Ratregion
5042436RH12943319393281172232811915Ratregion
5042502RH12947218392642015826420341Ratregion
5049528RH13353318494674605946746243Ratregion
5049588RH13356720094813875348138953Ratregion
5049602RH13357521693832228538322501Ratregion
5039422RH12769719394165154741651740Ratregion
5043238RH12991118395664090956641092Ratregion
5042354RH12938619794803386748034064Ratregion
5043276RH12993318294942041649420598Ratregion
5042730RH12961120293933234639332548Ratregion
5042748RH12962319893668975436689952Ratregion
5042782RH12964219493982808139828275Ratregion
5041172RH12870421992717784927178068Ratregion
5042920RH12972219993835746138357660Ratregion
5072522RH13689818094803470648034886Ratregion
5075262RH13849320793906989139070098Ratregion
5075268RH13849618394758699747587180Ratregion
5075426RH13858713793854739238547529Ratregion
5074158RH13785512392802514728025270Ratregion
5076158RH13901220292583162825831830Ratregion
5076298RH13909522394939544049395663Ratregion
5072694RH13699817094183066541830835Ratregion
5074576RH13809612393903246439032587Ratregion
5076874RH13942923994858721848587457Ratregion
5076950RH13947318494102940241029586Ratregion
5077040RH13952421594494966244949877Ratregion
5075868RH13884317292624997226250144Ratregion
5075878RH13884920994189990441900113Ratregion
5074932RH13830213194506521145065342Ratregion
5075018RH13835112092498637024986490Ratregion
5076062RH13895720995664072056640929Ratregion
5077482RH13978218192582476725824948Ratregion
5077508RH13979621393668832236688900Ratregion
5079384RH14096518594040239740402582Ratregion
5079608RH14109918092383357023833750Ratregion
5077804RH13996918394941886449419047Ratregion
5077814RH13997521492582557225825786Ratregion
5077960RH14006018893665977936659967Ratregion
5079692RH14114818794941963049419817Ratregion
5078214RH14021019493949364639493840Ratregion
5079892RH14126318095333847853338658Ratregion
5078112RH14015119293866203738662229Ratregion
5078274RH14024521395664098256641195Ratregion
5079014RH14068419192649007526490266Ratregion
5078472RH14036220194494979944950000Ratregion
5072978RH13716418495672358056723764Ratregion
5080258RH14147621794011372340113941Ratregion
5070936RH13479220494612791446128118Ratregion
5071078RH13487418993602307036023259Ratregion
5073394RH13741121894576481145765031Ratregion
5080522RH14162821694257969842579914Ratregion
5080536RH14163621994124345341243672Ratregion
5072914RH13712718195491272054912901Ratregion
5072950RH13714816793668975236689919Ratregion
5073104RH13724018594939238149392566Ratregion
5071730RH13525118994630899646309185Ratregion
5072008RH13541218793877346838773655Ratregion
5071444RH13508521992641709526417314Ratregion
5071472RH13510218094934395249344132Ratregion
5071542RH13514218394624377146244968Ratregion
5073712RH13759516595569056555690730Ratregion
5072330RH13678722893854905838549286Ratregion
5063444BI30180017493657692536577099Ratregion
5065088BF40576620792743809227438299Ratregion
5066598AU04826216893053725630537426Ratregion
5066774AU04815917892604071926040897Ratregion
5066972AU04804125794001339340013646Ratregion
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5067480AU04771927395356466753564940Ratregion
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5067680AU04760016993475965934759825Ratregion
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5067974AU04742526794903512749035389Ratregion
5068006AU04740616995069253150692695Ratregion
5068108AU04734315792532724425327401Ratregion
5068268AU04724826093682489436825154Ratregion
5069954D1Mit24614394495290944953054Ratregion
5070261RH9456515994301319743013356Ratregion
5069128AU04670626795462972854629995Ratregion
5069760AU02904818194083305840833239Ratregion
5069780AU02875825592542014025420398Ratregion
5069268AU04660824893910002339100099Ratregion
5060144AI07244718195723712757237308Ratregion
5063692BE10798415094522400145224151Ratregion
5065286BE12138615195569935255699503Ratregion
5065476BE11562715995670665156706810Ratregion
5060926BI28698413094054183640541966Ratregion
5060170AI14476110993965177339651882Ratregion
5060232BF40085411394345168743452803Ratregion
5060280AW53109918293675174836751930Ratregion
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5065264BE12131120192743797227438174Ratregion
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5060440BE11007517595590918155909356Ratregion
5062272BE10646115192391450723914657Ratregion
5064090BE11404215394182296141823114Ratregion
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5061002BF4016319492514322025143314Ratregion
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5062678BF40378815194030712540307276Ratregion
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5065994BF41302212793859662638596753Ratregion
5066052BE11664815094199025341990403Ratregion
5061064AI11289511593835794938358064Ratregion
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5062924BF39802624693599531335995559Ratregion
5062970BE11351216992519182725191996Ratregion
5064602BE10819115394232925742329410Ratregion
5066116BF41343211195492931054929421Ratregion
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5066502AU04831822892479531924795543Ratregion
5084148AI17627020493598550935985713Ratregion
5084362AI17667717693596689035967066Ratregion
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5082285BI27447611494516618945166303Ratregion
5086187AI13730919993880590338806102Ratregion
5087054AI40639319092517378425173974Ratregion
5087307AW53158114192753162227531763Ratregion
5087468PMC195978P226193892167438921935Ratregion
5086396BQ20487715795657372856573885Ratregion
5087299AW53155016794455922744559394Ratregion
5087789D1Bwg0491e15993901654739016706Ratregion
5088022Npas227094164154441641814Ratregion
5089137AU04897519392943540429435599Ratregion
5089387AU04912515194100482041004971Ratregion
5083353AA81841911895663941356639531Ratregion
5088333AU04850721292624451626244726Ratregion
5088335AU04850820193388390333884104Ratregion
5089459AU04916824294313624443136486Ratregion
5090645AU04987621694457736944577585Ratregion
5090881AF04326012594583917145839296Ratregion
5083753AA80069816092383052523830685Ratregion
5089665AU04929116194314767843147839Ratregion
5090419AU04973918495649343656493620Ratregion
5084132AA84864613194909195449092085Ratregion
5081795BE11830617594165120341651378Ratregion
5084678AI17124115894823315548233547Ratregion
5090109AU04955520892423915524239185Ratregion
5090237AU04963114692397017523970321Ratregion
5090237AU04963114692397017523970479Ratregion
5090285AU04966013393905125039051383Ratregion
5082087BF40940013492709583927095973Ratregion
5087787D1Bwg0212e15895427932554279503Ratregion
5082361BE11925316794230026842300435Ratregion
5082367BE11926715294160228141602433Ratregion
5085389BM39024815493835811838358272Ratregion
5090883AW55834013794745004347450180Ratregion
5085244BM38998518793343450633434693Ratregion
5090485AU04977817095713788657138056Ratregion
5088619AU04867717394012104040121211Ratregion
5081048RH14193519393680204636802239Ratregion
5085439AI17560216393645827536458438Ratregion
5090307AU04967313393658616936586302Ratregion
5089227AU04903025292754574227545996Ratregion
5082571BE11975115092743645227436602Ratregion
5084708AI17916811392625037226250485Ratregion
5082955BF39048521492510432725104541Ratregion
5081386AI45403818794231821442318401Ratregion
5081392AI45471015294196239741962549Ratregion
5081515AW43364520694232634142326547Ratregion
5081603BE11753718494522318745223371Ratregion
5085268BF28334015492582380925823963Ratregion
5083507AI54748218594824892548249110Ratregion
5083663BG38143216193700125737001418Ratregion
5086764BE10730019794582915845829355Ratregion
5081697BG3717339694230896742309063Ratregion
5081877BE11860920595535949255359697Ratregion
5085832BF38817417294054036540540537Ratregion
5503012B3gat242892616781226168240Ratregion
5503148SF3B1-1095650592456506615Ratregion
5503510DNAH7__476041395496025354960666Ratregion
5507541STS-Z41083095579543755796518Ratregion
5503158UGCGL110893839251838393165Ratregion
5503230UniSTS:237290095333869153338954Ratregion
5503398U2388617193783235837832529Ratregion
5504346D11S3330095122376851224061Ratregion
5505167Il18rap47194279787142798342Ratregion
5506100UniSTS:49835814595530820455308349Ratregion
5506360UniSTS:478964160192660536226606963Ratregion
5506881G4720226693997422639974492Ratregion
5506975fc48d10.y146793627977436280241Ratregion
5499561AI8525619695013848050138576Ratregion
5501782MARC_12193-12194:1004713732:141594906312949063544Ratregion
5500312GDB:18123832494740919847410233Ratregion
5499699UniSTS:2341159694232503642325132Ratregion
5505524G1938913394526337645263509Ratregion
5506583AW46451710392555624825556351Ratregion
5502335RH12454922394985184049852063Ratregion
55027409STS0113993297052732970666Ratregion
5502762TBC1D818094165315041653482Ratregion
5502790GDF819094845411048454300Ratregion
5502885Gls86494941458549415449Ratregion
5502353RH12456518192555636125556542Ratregion
5502473RH1249838293839391038393992Ratregion
6903883D9Mco10323795047329250473531Ratregion
6903886D9Mco10420095217623152176433Ratregion
6903888D9Mco10521395228303952283252Ratregion
6903890D9Mco10621595318488153185096Ratregion
Position Markers

Flank 1: (D9Rat130)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2923,754,024 - 23,754,144 (+)MAPPER
Rnor_6.0927,486,036 - 27,486,155NCBI
Rnor_5.0926,333,329 - 26,333,448UniSTS
RGSC_v3.4920,102,047 - 20,102,166UniSTS
RGSC_v3.4920,102,034 - 20,102,447RGD
RGSC_v3.1920,099,890 - 20,100,009RGD
Celera921,328,905 - 21,329,024UniSTS
RH 3.4 Map9230.2RGD
RH 3.4 Map9230.2UniSTS
RH 2.0 Map9202.5RGD
SHRSP x BN Map920.1498RGD
Cytogenetic Map9q13UniSTS
Flank 2: (D9Rat123)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2958,157,014 - 58,157,242 (+)MAPPER
Rnor_6.0963,264,056 - 63,264,281NCBI
Rnor_5.0963,071,527 - 63,071,752UniSTS
RGSC_v3.4955,470,118 - 55,470,344RGD
RGSC_v3.4955,470,119 - 55,470,344UniSTS
RGSC_v3.1955,617,100 - 55,617,326RGD
Celera955,621,311 - 55,621,536UniSTS
SHRSP x BN Map939.9098UniSTS
SHRSP x BN Map939.9098RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
6903937Bp356Blood pressure QTL 3560.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94790220852283252Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat


Additional Information

RGD Curation Notes
Note Type Note Reference