Activ5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Activ5 (Activity QTL 5) Rattus norvegicus

Symbol: Activ5
Name: Activity QTL 5
RGD ID: 7205510
Trait: locomotor behavior trait   (VT:0001392)    
Measurement Type: number of entries into a discrete space in an experimental apparatus   (CMO:0000960)    
LOD Score: 3.78
P Value: 2.8E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81649,099,196 - 91,442,908RGD_MAPPER_PIPELINE
mRatBN7.21642,396,345 - 84,729,064RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01646,558,188 - 90,668,790RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01646,234,202 - 90,051,983RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41646,718,586 - 90,238,779RGD_MAPPER_PIPELINERGSC3.4
Cross Type: F2 of reciprocal crosses
Strains Crossed: WAG ISIAH 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Activ5Ratnumber of entries into a discrete space in an experimental apparatus  IDA 2306974 RGD 

Experimental Condition
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Activ5Ratcontrol condition  IDA 2306974 RGD 

Measurement Method
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Activ5Ratopen field apparatus method  IDA 2306974 RGD 

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Activ5RatISIAH  IEA 2306974 RGD 
Activ5RatWAG  IEA 2306974 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Activ5Ratlocomotor behavior trait  IDA 2306974 RGD 

Disease Annotations     Click to see Annotation Detail View

Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ISIAH  (IEA)
WAG  (IEA)

References

References - curated
# Reference Title Reference Citation
1. The characteristics of motor activity in ISIAH rats in an open field test are controlled by genes on chromosomes 2 and 16. Redina OE, etal., Neurosci Behav Physiol. 2009 Jan;39(1):57-64. Epub 2008 Dec 17.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1306641Tenm3teneurin transmembrane protein 3164125190943978594Rat
40956051LOC120097606small nucleolar RNA SNORA17164323777243237902Rat
7688695LOC102552563uncharacterized LOC102552563164398378543991280Rat
41009377Mif-ps4macrophage migration inhibitory factor, pseudogene 4164405798844058997Rat
1359671DctddCMP deaminase164406695244098654Rat
41383168LOC120097446uncharacterized LOC120097446164416121244164003Rat
1596760Rps15a-ps8ribosomal protein S15a, pseudogene 8164417052644170972Rat
7540575LOC102551022uncharacterized LOC102551022164419602144205176Rat
1559427Wwc2WW and C2 domain containing 2164425837244421815Rat
1305271Cldn22claudin 22164442234444423370Rat
1562043Cldn24claudin 24164442481044425472Rat
7594186LOC102551260uncharacterized LOC102551260164449135344497591Rat
1305302Cdkn2aipCDKN2A interacting protein164453614744546216Rat
1307347Ing2inhibitor of growth family, member 2164457359244584180Rat
1587353Ndufaf7-ps1NADH:ubiquinone oxidoreductase complex assembly factor 7, pseudogene 1164461422644615701Rat
1560302Erh-ps2ERH, mRNA splicing and mitosis factor, pseudogene 2164463136644632601Rat
1564132Rwdd4RWD domain containing 4164471469844733090Rat
1309765Trappc11trafficking protein particle complex subunit 11164473316944779324Rat
7580994LOC102551690uncharacterized LOC102551690164480445644810885Rat
41108070LOC120097672small nucleolar RNA SNORA70164481066844810803Rat
708477Stox2storkhead box 2164484817945087238Rat
41167470LOC120097575uncharacterized LOC120097575164487462344880702Rat
9368194LOC103693959uncharacterized LOC103693959164512509845180386Rat
1311645Enpp6ectonucleotide pyrophosphatase/phosphodiesterase 6164516588345294126Rat
1597769Ptmal4prothymosin alpha like 4164529538245307996Rat
7633194LOC102551895uncharacterized LOC102551895164533044745337282Rat
40949490LOC120097410uncharacterized LOC120097410164533760745339067Rat
1597747Ndufa3-ps1NADH:ubiquinone oxidoreductase subunit A3, pseudogene 1164536942845369682Rat
1304922Irf2interferon regulatory factor 2164543921545550054Rat
7619887LOC102552290uncharacterized LOC102552290164544824545462686Rat
40947202Ube2v1-ps3ubiquitin conjugating enzyme E2 V1, pseudogene 3164551413945514882Rat
40975017LOC120097385uncharacterized LOC120097385164555781545634329Rat
1592034Rpl4-ps3ribosomal protein L4, pseudogene 3164565621045657689Rat
2275Casp3caspase 3164566291045681171Rat
1562119Primpolprimase and DNA directed polymerase164568125245715758Rat
1562566Cenpucentromere protein U164571582145739038Rat
2015Acsl1acyl-CoA synthetase long-chain family member 1164575524645821541Rat
11492380LOC108348397uncharacterized LOC108348397164582156945837350Rat
41085564LOC120097625small nucleolar RNA SNORA26164588255245882683Rat
40948478LOC120097416uncharacterized LOC120097416164588353645886632Rat
41398591LOC120097417uncharacterized LOC120097417164588546545891183Rat
7538198LOC102553008uncharacterized LOC102553008164590194245914770Rat
11366572LOC108353101glyceraldehyde-3-phosphate dehydrogenase pseudogene164593892345943631Rat
41292406LOC120097420uncharacterized LOC120097420164596851945974350Rat
1564073Helthelt bHLH transcription factor164599122745993045Rat
41047665Trnat-agu36transfer RNA threonine (anticodon AGU) 36164600166546001745Rat
620352Slc25a4solute carrier family 25 member 4164607293546076730Rat
1307325Cfap97cilia and flagella associated protein 97164608610446135194Rat
1310150Snx25sorting nexin 25164613455246238471Rat
40946287LOC120097653U6 spliceosomal RNA164616119046161295Rat
1305896Lrp2bpLrp2 binding protein164624155446269221Rat
1565715Ankrd37ankyrin repeat domain 37164626893346271971Rat
1311161Ufsp2UFM1-specific peptidase 2164627201646291080Rat
1564308Cfap96cilia and flagella associated protein 96164629107546315616Rat
1564538Ccdc110coiled-coil domain containing 110164631574546337050Rat
620427Pdlim3PDZ and LIM domain 3164635246046383680Rat
41168026LOC120097631U6atac minor spliceosomal RNA164640181646401933Rat
1583491Gapdh-ps100Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 100164641375346414771Rat
41260400LOC120097373uncharacterized LOC120097373164642924046438631Rat
620061Sorbs2sorbin and SH3 domain containing 2164643522046748743Rat
41125224LOC120097374uncharacterized LOC120097374164660853746610271Rat
41305805LOC120097598small nucleolar RNA SNORA17164667983146679962Rat
41180056LOC120097435uncharacterized LOC120097435164680461246813785Rat
735171Tlr3toll-like receptor 3164682198046837900Rat
1586153Fam149afamily with sequence similarity 149, member A164685537746914553Rat
708530Cyp4v3cytochrome P450, family 4, subfamily v, polypeptide 3164691792946958735Rat
1589656Tuba1b-ps9tubulin, alpha 1B, pseudogene 9164695173246954254Rat
67382Klkb1kallikrein B1164695863446982054Rat
1309364F11coagulation factor XI164698798847009015Rat
620797Mtnr1amelatonin receptor 1A164714446147163919Rat
621254Fat1FAT atypical cadherin 1164717725347296261Rat
1588596Aldoa-ps1aldolase, fructose-bisphosphate A, pseudogene 1164749076147492204Rat
11411172LOC108348398uncharacterized LOC108348398164763321647650775Rat
1563604Ptrh2-ps1peptidyl-tRNA hydrolase 2, pseudogene 1164787217247872720Rat
7530546LOC102554462uncharacterized LOC102554462164795427547989673Rat
41329707LOC120097644U6 spliceosomal RNA164804191948042025Rat
1589009Edf1-ps4endothelial differentiation-related factor 1, pseudogene 4164848871248489307Rat
1307052Adam34la disintegrin and metalloprotease domain 34-like164853645648542246Rat
1589040Adam34a disintegrin and metallopeptidase domain 34164855738548561744Rat
1589057Calcoco2-ps1calcium binding and coiled-coil domain 2, pseudogene 1164859537948600523Rat
1559501Adam26aa disintegrin and metallopeptidase domain 26A164860099848608314Rat
1559626Atp5hl1ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d-like 1164862834948628948Rat
41257946Ncor1-ps1nuclear receptor co-repressor 1, pseudogene 1164867287348673861Rat
41113289Hmgb1-ps28high-mobility group box 1, pseudogene 28164874559648746342Rat
2319133Zfp42zinc finger protein 42164883646348845443Rat
11444868Rpl23-ps1ribosomal protein L23,pseudogene 1164888529148885721Rat
1587863Snrpc-ps1small nuclear ribonucleoprotein polypeptide C, pseudogene 1164891588248918885Rat
1565382Triml2tripartite motif family-like 2164894471248960949Rat
1593988Baz2a-ps1bromodomain adjacent to zinc finger domain, 2A, pseudogene 1164898277748989498Rat
1305337Triml1tripartite motif family-like 1164899496849005343Rat
41141043LOC120097661U6 spliceosomal RNA164948311249483211Rat
9999338Rps27a-ps15ribosomal protein S27a, pseudogene 15164959036749590926Rat
9999339Rps27a-ps16ribosomal protein S27a, pseudogene 16165003563450036049Rat
41225748LOC120097413uncharacterized LOC120097413165048751250503637Rat
9126708LOC10369396560S ribosomal protein L7 pseudogene165056549150566233Rat
1586634Gemin8-ps7gem (nuclear organelle) associated protein 8, pseudogene 7165058814950588849Rat
7540925LOC102547380uncharacterized LOC102547380165088885450901635Rat
41154096LOC120097486uncharacterized LOC120097486165091103650924771Rat
1585495Frg1FSHD region gene 1165092578350946661Rat
7561344LOC102547443uncharacterized LOC102547443165093531350966211Rat
621568Asah1N-acylsphingosine amidohydrolase 1165096640450997827Rat
620901Pcm1pericentriolar material 1165100831551105261Rat
620169Fgl1fibrinogen-like 1165112065251150907Rat
631381Mtus1microtubule associated scaffold protein 1165120249751347794Rat
9201979LOC103693968uncharacterized LOC103693968165124481851256450Rat
41362756LOC120097427uncharacterized LOC120097427165128400351290733Rat
41002418LOC120097428uncharacterized LOC120097428165129541951301207Rat
1308028Pdgfrlplatelet-derived growth factor receptor-like165134792951407850Rat
41365690Elob-ps1elongin B, pseudogene 1165137549251380114Rat
68387Slc7a2solute carrier family 7 member 2165141747851470784Rat
6495615Adam25a disintegrin and metallopeptidase domain 25165148876451492790Rat
1309066Adam24ADAM metallopeptidase domain 24165157827851584265Rat
1306608Mtmr7myotubularin related protein 7165164126751732212Rat
1560016Vps37aVPS37A subunit of ESCRT-I165173617051775384Rat
1305313Cnot7CCR4-NOT transcription complex, subunit 7165177541651794581Rat
628681Zdhhc2zinc finger DHHC-type palmitoyltransferase 2165180846551878060Rat
1563411Micu3mitochondrial calcium uptake family, member 3165191985952010705Rat
71068Fgf20fibroblast growth factor 20165203054952038201Rat
41067752LOC120097642U6 spliceosomal RNA165208750252087608Rat
1590854Rps3-ps5ribosomal protein S3, pseudogene 5165264188552642629Rat
1564316Msr1macrophage scavenger receptor 1165271777552803602Rat
6489169Gnb1-ps2G protein subunit beta 1, pseudogene 2165278833152790166Rat
41055381LOC120097637U4 spliceosomal RNA165298005752980188Rat
1588595Zfp148-ps1zinc finger protein 148, pseudogene 1165305519853057088Rat
41369722Rpl10a-ps10ribosomal protein L10A, pseudogene 10165313477053135584Rat
2322723Smad2-ps1SMAD family member 2, pseudogene 1165313646653137333Rat
1303318Tusc3tumor suppressor candidate 3165319619553345241Rat
41032360LOC120097620small nucleolar RNA SNORA17165335586353355986Rat
11480995Gapdh-ps27Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 27165339106453392063Rat
1307788Sgczsarcoglycan zeta165366028354740811Rat
11372709LOC108353112uncharacterized LOC108353112165374435553809921Rat
41029514LOC120097547uncharacterized LOC120097547165379065553822441Rat
41022210LOC120097546uncharacterized LOC120097546165383921353840224Rat
41355369LOC120097544uncharacterized LOC120097544165397301253982699Rat
2325533Mir383microRNA 383165404034054040413Rat
2322528Ddx18-ps1DEAD-box helicase 18, pseudogene 1165422270054227080Rat
1590853Eif2s1-ps3eukaryotic translation initiation factor 2 subunit alpha, pseudogene 3165440093254401861Rat
40943334LOC120097630U2 spliceosomal RNA165460551654605717Rat
1585256Vdac1-ps4voltage-dependent anion channel 1, pseudogene 4165511540855116384Rat
1585243C16h8orf48similar to human chromosome 8 open reading frame 48165524474455246642Rat
68416Dlc1DLC1 Rho GTPase activating protein165524671655671441Rat
11373421LOC108348402uncharacterized LOC108348402165549336255508311Rat
41224531LOC120097448uncharacterized LOC120097448165569594055709767Rat
1304810Trmt9btRNA methyltransferase 9B (putative)165574055155792198Rat
7630189Ube2e3-ps2ubiquitin-conjugating enzyme E2E 3, pseudogene 2165579978155800464Rat
2321133Sri-ps1sorcin, pseudogene 1165590642855907035Rat
1565245Hist1h2bc-ps1histone cluster 1, H2bc, pseudogene 1165594090755950046Rat
1562583Lonrf1LON peptidase N-terminal domain and ring finger 1165598457256015156Rat
41335540LOC120097451uncharacterized LOC120097451165608045856083734Rat
1311793Prag1PEAK1 related kinase activating pseudokinase 1165608788556141153Rat
7589768LOC102552468uncharacterized LOC102552468165634883456370705Rat
41253835LOC120097468uncharacterized LOC120097468165637070956374687Rat
41064674LOC120097487uncharacterized LOC120097487165639585856401150Rat
1309001Cldn23claudin 23165641367756415401Rat
6499975Lrpl1LDL receptor related protein like 1165642214556471368Rat
6500448Tufm-ps1Tu translation elongation factor, mitochondrial, pseudogene 1165643746656439103Rat
41266011LOC120097469uncharacterized LOC120097469165650165556508261Rat
1308812Mfhas1multifunctional ROCO family signaling regulator 1165654546256633649Rat
41219742LOC120097472uncharacterized LOC120097472165666140856710374Rat
1308378Eri1exoribonuclease 1165672410156744228Rat
7553804LOC102553369uncharacterized LOC102553369165677155156787029Rat
41097846LOC120097474uncharacterized LOC120097474165681295956816099Rat
621600Ppp1r3bprotein phosphatase 1, regulatory subunit 3B165683001156842395Rat
40973434Rpl21-ps23ribosomal protein L21, pseudogene 23165691489556918873Rat
7584717LOC102553697uncharacterized LOC102553697165706374857091262Rat
9216280LOC103693975uncharacterized LOC103693975165710271057115093Rat
1308784Tnkstankyrase165722317457370740Rat
620625Dusp4dual specificity phosphatase 4165737665957398161Rat
41342762LOC120097666U7 small nuclear RNA165740486757404926Rat
41246384LOC120097484uncharacterized LOC120097484165741833657422404Rat
9159214LOC10369397860S ribosomal protein L9-like165742942857430476Rat
6490582Rabif-ps1RAB interacting factor, pseudogene 1165798334257983697Rat
40987971LOC120097587small nucleolar RNA SNORA2/SNORA34 family165800164758001782Rat
1303011Sarafstore-operated calcium entry-associated regulatory factor165801723158035481Rat
1307168Leprotl1leptin receptor overlapping transcript-like 1165804093458053602Rat
1566335Mboat4membrane bound O-acyltransferase domain containing 4165806417858077523Rat
1307549Dctn6dynactin subunit 6165807759558096604Rat
1590852Rps17-ps6ribosomal protein S17, pseudogene 6165813384558134324Rat
40926223LOC120097589small nucleolar RNA SNORA29165815097558151119Rat
41011644LOC120097492uncharacterized LOC120097492165815983258164364Rat
41097190LOC120097647U6 spliceosomal RNA165817347258173578Rat
41008204LOC120097660U6 spliceosomal RNA165820278258202883Rat
1561067RbpmsRNA binding protein, mRNA processing factor165823937058395424Rat
41001752LOC120097493uncharacterized LOC120097493165838435558393888Rat
1310134Gtf2e2general transcription factor IIE subunit 2165839930758449467Rat
6501537Smim18small integral membrane protein 18165843170958439372Rat
41290435LOC120097494uncharacterized LOC120097494165847590258488564Rat
621747Gsrglutathione-disulfide reductase165848220958525256Rat
1306023Ubxn8UBX domain protein 8165853608658557684Rat
3381Ppp2cbprotein phosphatase 2 catalytic subunit beta165855811958579325Rat
1560512Rps25-ps6ribosomal protein S25, pseudogene 6165859778758598207Rat
1311266Tex15testis expressed 15, meiosis and synapsis associated165859899158659005Rat
1305088Purgpurine-rich element binding protein G165873232758763356Rat
1564788WrnWRN RecQ like helicase165876351758898604Rat
41245709LOC120097496uncharacterized LOC120097496165876431558781404Rat
1563097Rps15al5ribosomal protein S15A-like 5165890777058908201Rat
1596879Atpaf2-ps1ATP synthase mitochondrial F1 complex assembly factor 2, pseudogene 1165912763159128475Rat
41355498LOC120097371uncharacterized LOC120097371165924263459251923Rat
621341Nrg1neuregulin 1165925065860304519Rat
41207158LOC120097372uncharacterized LOC120097372165953674259548468Rat
7578262LOC102555473uncharacterized LOC102555473166032322860348169Rat
41119948LOC120097607U2 spliceosomal RNA166048425560484448Rat
1590851Hsp90ab1-ps4heat shock protein 90 alpha family class B member 1, pseudogene 4166075064860763034Rat
1359164Fut10fucosyltransferase 10166086876160958762Rat
1311297Mak16MAK16 homolog166097269960981250Rat
1310414Tti2TELO2 interacting protein 2166098066560988587Rat
41010522Snord13small nucleolar RNA, C/D box 13166098890960989013Rat
1561238Rnf122ring finger protein 122166100987961027429Rat
1310090Dusp26dual specificity phosphatase 26166104178461049319Rat
41360729LOC120097498uncharacterized LOC120097498166112209861137078Rat
7543674LOC102556287uncharacterized LOC102556287166129291761367615Rat
11415534LOC108348408uncharacterized LOC108348408166200731762021618Rat
41377703LOC120097501uncharacterized LOC120097501166212140562134088Rat
41122791LOC120097502uncharacterized LOC120097502166233163462375374Rat
1592970Rps20-ps8ribosomal protein S20, pseudogene 8166254039662540802Rat
1309245Unc5dunc-5 netrin receptor D166286011963406932Rat
41011289Trnal-aag8transfer RNA leucine (anticodon AAG) 8166292303062923110Rat
40993334LOC120097619U2 spliceosomal RNA166310940863109581Rat
41237509Trnas-aga51transfer RNA serine (anticodon AGA) 51166341721763417297Rat
2322262Nme1-ps2NME/NM23 nucleoside diphosphate kinase 1, pseudogene 2166346481463465284Rat
1590850Rps7-ps14ribosomal protein S7, pseudogene 14166389205763892632Rat
1589654Pcbp2-ps11poly(rC) binding protein 2, pseudogene 11166417346464175276Rat
41172685LOC120093063sperm motility kinase-like166425871764385668Rat
41338602LOC120097503uncharacterized LOC120097503166430384164315218Rat
6494469LOC100911229sperm motility kinase-like166441253364424489Rat
1562638Smoksperm motility kinase166445734464469296Rat
11432444LOC108353106uncharacterized LOC108353106166446944364474565Rat
6493806LOC100911264uncharacterized LOC100911264166448862564530093Rat
1359470PotegPOTE ankyrin domain family, member G166448863264670418Rat
69281Chrna6cholinergic receptor nicotinic alpha 6 subunit166469774164704441Rat
621544Chrnb3cholinergic receptor nicotinic beta 3 subunit166471343864751360Rat
1562020Rpl13a-ps8ribosomal protein L13A, pseudogene 8166476454664765239Rat
6493344Tex24ltestis expressed gene 24 like166477288064775087Rat
620259Eif4ebp1eukaryotic translation initiation factor 4E binding protein 1166479259564805984Rat
2061Adrb3adrenoceptor beta 3166483982064844552Rat
1307172Got1l1glutamic-oxaloacetic transaminase 1-like 1166486030864873656Rat
1562965Rab11fip1RAB11 family interacting protein 1166488690264917491Rat
1308817Brf2BRF2 general transcription factor 3B subunit166492833464933057Rat
2323365Adgra2adhesion G protein-coupled receptor A2166493296464971433Rat
41183719LOC120097504uncharacterized LOC120097504166499955265002608Rat
1308962Plpbppyridoxal phosphate binding protein166500329265014886Rat
1309010Erlin2ER lipid raft associated 2166501765465034184Rat
1588249Zfp703zinc finger protein 703166507650765080677Rat
11510605LOC108348410uncharacterized LOC108348410166510199465133088Rat
11416552Rpl21l3ribosomal protein L21 like 3166511827865118796Rat
11407470LOC108348411uncharacterized LOC108348411166515616165167893Rat
11474030LOC108348412uncharacterized LOC108348412166520128365225445Rat
41086999LOC120097505uncharacterized LOC120097505166523346465329563Rat
11428828LOC108348413uncharacterized LOC108348413166528696665302218Rat
41085096LOC120097638U4 spliceosomal RNA166550314365503295Rat
7631653LOC102548721uncharacterized LOC102548721166574062765745651Rat
41184862LOC120097512uncharacterized LOC120097512166586097665872807Rat
2323691Rps28-ps3ribosomal protein S28, pseudogene 3166588838965888708Rat
1307589Thap1THAP domain containing 1166590534865909942Rat
1590842Rnf170ring finger protein 170166592888665954092Rat
1560960Hook3hook microtubule-tethering protein 3166595429366058812Rat
2625Fntafarnesyltransferase, CAAX box, subunit alpha166606513166083460Rat
1310810Pomkprotein-O-mannose kinase166608556966101360Rat
1560755Hgsnatheparan-alpha-glucosaminide N-acetyltransferase166610523366137444Rat
7563810Timm23-ps5translocase of inner mitochondrial membrane 23, pseudogene 5166613000366132358Rat
1585877Kcnu1potassium calcium-activated channel subfamily U member 1166614169666229493Rat
1305632Ash2lASH2 like histone lysine methyltransferase complex subunit166624220566264064Rat
41019151LOC120097390uncharacterized LOC120097390166624868766260813Rat
3770Starsteroidogenic acute regulatory protein166626709466274368Rat
1304967Lsm1LSM1 homolog, mRNA degradation associated166627734566288852Rat
1560875Bag4BAG cochaperone 4166628867866305893Rat
40975762LOC120097398translation initiation factor IF-2-like166630218666320513Rat
1585818Ddhd2DDHD domain containing 2166631946966349025Rat
41392674LOC120097664U6 spliceosomal RNA166632724866327355Rat
1591734Plpp5phospholipid phosphatase 5166634948366353887Rat
1308980Nsd3nuclear receptor binding SET domain protein 3166635403066466202Rat
40986082LOC120097673small nucleolar RNA SNORA70166643716066437288Rat
1311220Letm2leucine zipper and EF-hand containing transmembrane protein 2166646495866489640Rat
620713Fgfr1Fibroblast growth factor receptor 1166649193066547161Rat
41035044LOC120097583small nucleolar RNA SNORA15166650282466502950Rat
41069881LOC120097430uncharacterized LOC120097430166655817666561902Rat
41207977LOC120097442uncharacterized LOC120097442166661466766616009Rat
2322704H2az1-ps1H2A.Z variant histone 1, pseudogene 1166665427266655163Rat
2302583Rps28-ps1ribosomal protein S28, pseudogene 1166680835766808682Rat
1303120Tacc1transforming, acidic coiled-coil containing protein 1166681223266895736Rat
1586710Plekha2pleckstrin homology domain containing A2166693868467000661Rat
1306242Htra4HtrA serine peptidase 4166700160567015074Rat
1306769Tm2d2TM2 domain containing 2166701668367022206Rat
621473Adam9ADAM metallopeptidase domain 9166702253867101647Rat
735114Adam32ADAM metallopeptidase domain 32166710238467212163Rat
41287367LOC120097663U6 spliceosomal RNA166711428967114391Rat
621471Adam5ADAM metallopeptidase domain 5166722309567298733Rat
621469Adam3aADAM metallopeptidase domain 3A166729994967349970Rat
41067128LOC120097614small nucleolar RNA SNORA17166734631367346437Rat
620405Adam18ADAM metallopeptidase domain 18166735236067425820Rat
619989Ido1indoleamine 2,3-dioxygenase 1166743065467442726Rat
11465003LOC108348416uncharacterized LOC108348416166744016967444187Rat
1596771Ido2indoleamine 2,3-dioxygenase 2166745915867498052Rat
6499724Tcimtranscriptional and immune response regulator166759576267597055Rat
40962456LOC120097515uncharacterized LOC120097515166763149467653824Rat
11472134LOC108348419uncharacterized LOC108348419166768602867699808Rat
41168057LOC120097597small nucleolar RNA SNORA48166788064467880796Rat
7706072LOC102553995uncharacterized LOC102553995166789160867895198Rat
41330854LOC120097517uncharacterized LOC120097517166790394667907039Rat
1584398Zmat4zinc finger, matrin type 4166796941068361377Rat
9389461LOC10369399140S ribosomal protein S8 pseudogene166808729068099660Rat
41116796LOC120097520uncharacterized LOC120097520166846704868477524Rat
621074Sfrp1secreted frizzled-related protein 1166857576368614180Rat
41360519LOC120097635U4 spliceosomal RNA166866421968664351Rat
1583286Hnrnpa1-ps35heterogeneous nuclear ribonucleoprotein A1, pseudogene 35166867405568675087Rat
41120881LOC120097609small nucleolar RNA SNORA17166873431868734454Rat
1359725Golga7golgin A7166876725968782536Rat
1307397Gins4GINS complex subunit 4166878757268799938Rat
1310520Gpat4glycerol-3-phosphate acyltransferase 4166881903168852903Rat
1597780Nkx6-3NK6 homeobox 3166886840468873617Rat
1309620Ank1ankyrin 1166887629469054963Rat
41128358LOC120097525uncharacterized LOC120097525166894646768948885Rat
1304892Kat6alysine acetyltransferase 6A166908491469165923Rat
41312810LOC120097527uncharacterized LOC120097527166913914269162178Rat
41149989Kat6alK(lysine) acetyltransferase 6A like166916336069217498Rat
41325543LOC120097529uncharacterized LOC120097529166918849069205200Rat
70969Ap3m2adaptor related protein complex 3 subunit mu 2166921752669237372Rat
3342Platplasminogen activator, tissue type166924058269265177Rat
11448278LOC108348292glyceraldehyde-3-phosphate dehydrogenase pseudogene166928587169287728Rat
621375Ikbkbinhibitor of nuclear factor kappa B kinase subunit beta166931948769373251Rat
3363PolbDNA polymerase beta166937943869402710Rat
1563172Dkk4dickkopf WNT signaling pathway inhibitor 4166940321569406580Rat
7690544Vdac3l1voltage-dependent anion channel 3 like 1166943284969435732Rat
621577Vdac3voltage-dependent anion channel 3166943498269451473Rat
3699Slc20a2solute carrier family 20 member 2166946085069551418Rat
41402600LOC120097400uncharacterized LOC120097400166953261469536391Rat
2318364Smim19small integral membrane protein 19166955150769564323Rat
1307668Mrps31mitochondrial ribosomal protein S31166960134969621609Rat
41312663LOC120097532uncharacterized LOC120097532166962174669627990Rat
1311488Slc25a15solute carrier family 25 member 15166963158169654869Rat
13207460Lnc-hclncRNA derived from hepatocytes166965345869654867Rat
1305825Tpte2transmembrane phosphoinositide 3-phosphatase and tensin homolog 2166965887469756571Rat
7711557Sub1-ps2SUB1 regulator of transcription, pseudogene 2166974132869742039Rat
41324475Trnaa-agc82transfer RNA alanine (anticodon AGC) 82166975226369752335Rat
1306998Thsd1thrombospondin type 1 domain containing 1166977140869804844Rat
1309754Vps36vacuolar protein sorting 36 homolog166981040469834789Rat
1311631Ckap2cytoskeleton associated protein 2166983966869864852Rat
1307419Nek3NIMA-related kinase 3166986702069892477Rat
1593817Nek5NIMA-related kinase 5166989541469938668Rat
1564725Alg11ALG11, alpha-1,2-mannosyltransferase166994054069951617Rat
2180Atp7bATPase copper transporting beta166995228670024404Rat
1559811Ccdc70coiled-coil domain containing 70167003730970042401Rat
41096911Fam90a1l1family with sequence similarity 90, member A1 like 1167004560670056398Rat
41071646Fam90a1l5family with sequence similarity 90, member A1 like 5167006043570069633Rat
40975440Fam90a1l3family with sequence similarity 90, member A1 like 3167007398670081411Rat
41377630Fam90a1l2family with sequence similarity 90, member A1 like 2167008610570093757Rat
2318111Fam90a1afamily with sequence similarity 90 member A1A167009843970106147Rat
41142380Fam90a1l4family with sequence similarity 90, member A1 like 4167011089370118229Rat
1559883Defb13defensin beta 13167012940070131509Rat
41355023Defb105adefensin beta 105A167013621870138645Rat
1563061Defb15defensin beta 15167014119370143891Rat
41368796Spag11bl1sperm associated antigen 11b like 1167015206170154406Rat
1564032Defb11defensin beta 11167015604470163062Rat
1563138Defb9defensin beta 9167018069270183602Rat
1562518Defb10defensin beta 10167020259970212734Rat
1566125Defb2defensin beta 2167023187070245817Rat
1563282Defb50defensin beta 50167025409470266553Rat
619943Defb1defensin beta 1167029886270313604Rat
727951Defa5defensin alpha 5167034253070344854Rat
1304852Defa24defensin alpha 24167034955070350582Rat
1561398Defal1defensin alpha-like 1167037149270372481Rat
41289242Defa5-ps2defensin alpha 5, pseudogene 2167039178170392695Rat
11378360Defal1-ps1defensin alpha-like 1, pseudogene 1167039877870398984Rat
1562293Defa6defensin alpha 6167040522370406237Rat
1560529Defa7defensin alpha 7167041915270430555Rat
1566065Defa8defensin alpha 8167043312170434154Rat
41379300Defa5-ps1defensin alpha 5, pseudogene 1167045492270455803Rat
1564555Defa9defensin alpha 9167048181370482803Rat
727857Np4defensin NP-4 precursor167049460770497261Rat
1587187Defa31defensin alpha 31167051389270516234Rat
1587186Defa3defensin alpha 3167053343670535592Rat
1589653Ratnp-3bdefensin rat NP-3 precursor167054436470546533Rat
1564782Defb51defensin beta 51167057092970575052Rat
1565394Defb52defensin beta 52167058815070590626Rat
1562959Defb33defensin beta 33167059476270601543Rat
1563630Defb5defensin beta 5167061298570615389Rat
619944Defb4defensin beta 4167065047270653665Rat
1561378Defb14defensin beta 14167066344370668473Rat
628905Spag11asperm associated antigen 11A167068232670684067Rat
2324475Spag11bsperm associated antigen 11B167069781070700336Rat
41124527Defb34defensin beta 34167072020070723134Rat
1564879Defb105bdefensin beta 105B167072568770728859Rat
1563816Defb39defensin beta 39167074034770744157Rat
1590228Btf3-ps2basic transcription factor 3, pseudogene 2167075135670751842Rat
1561801Defb38defensin beta 38167075637070759701Rat
1560790Defb37defensin beta 37167078353270796798Rat
1563712Defb40defensin beta 40167082441970827502Rat
2324120Pkml1pyruvate kinase M1/2 like 1167083857270840735Rat
1359335Xkr5XK related 5167087498370892972Rat
1306405Agpat51-acylglycerol-3-phosphate O-acyltransferase 5167093948070985745Rat
2323116Map1lc3b2microtubule-associated protein 1 light chain 3 beta 2167099412870994580Rat
1560642Mcph1microcephalin 1167102185571224067Rat
621861Angpt2angiopoietin 2167108836471138805Rat
40984573LOC120097621small nucleolar RNA SNORA17167121221771212319Rat
41070910LOC120097611small nucleolar RNA SNORA17167129810471298230Rat
41154183LOC120097543uncharacterized LOC120097543167142305271462255Rat
41291833LOC120097623small nucleolar RNA SNORA17167152906871529192Rat
11367158LOC108348424uncharacterized LOC108348424167182176171886903Rat
11368550LOC108348426uncharacterized LOC108348426167219418872203386Rat
1305103Csmd1CUB and Sushi multiple domains 1167221818973818380Rat
41080127LOC120097408uncharacterized LOC120097408167274265772769166Rat
41145025LOC120097608small nucleolar RNA SNORA17167287036472870488Rat
11403925LOC108353087cyclin-dependent kinase 4 pseudogene167316304673164202Rat
7505881LOC102550761uncharacterized LOC102550761167382990973858522Rat
41320303LOC120097550uncharacterized LOC120097550167400308674012880Rat
40999196LOC120097551uncharacterized LOC120097551167407246474076678Rat
41343898LOC120097552uncharacterized LOC120097552167413797874140817Rat
41323020LOC120097554uncharacterized LOC120097554167423054774233919Rat
7700141LOC102550919uncharacterized LOC102550919167437920774473037Rat
41277817LOC120097613small nucleolar RNA SNORA17167442447974424603Rat
40944475LOC120097555uncharacterized LOC120097555167447306574477583Rat
1590848Riox2-ps2ribosomal oxygenase 2, pseudogene 2167449032074492124Rat
631437Myom2myomesin 2167452014874592658Rat
7709651LOC102551089uncharacterized LOC102551089167452259474524791Rat
1563576Kbtbd11kelch repeat and BTB domain containing 11167461829174638010Rat
7561455LOC102551149uncharacterized LOC102551149167463231574633836Rat
1565043Arhgef10Rho guanine nucleotide exchange factor 10167464714774738784Rat
7550023LOC102557538uncharacterized LOC102557538167465350174661465Rat
1359518Cln8CLN8, transmembrane ER and ERGIC protein167474966274759553Rat
620224Dlgap2DLG associated protein 2167478677175496402Rat
7506633Stmp1l1short transmembrane mitochondrial protein 1 like 1167538077875381069Rat
1559872Erich1glutamate-rich 1167550132275569129Rat
1559733Tdrptestis development related protein167562404775652635Rat
1359105Fbxo25F-box protein 25167566606275701770Rat
1565675Coprscoordinator of PRMT5 and differentiation stimulator167572126475726375Rat
1311283Champ1chromosome alignment maintaining phosphoprotein 1167573395875744931Rat
1308778Upf3aUPF3A, regulator of nonsense mediated mRNA decay167575744275768478Rat
40943900LOC120097557uncharacterized LOC120097557167576866275775463Rat
1305076Cdc16cell division cycle 16167577302675796586Rat
1584165Cfap97d2CFAP97 domain containing 2167580243475827040Rat
41335051LOC1200975795S ribosomal RNA167581899875819115Rat
41293475LOC120097558uncharacterized LOC120097558167583772775843361Rat
69365Rasa3RAS p21 protein activator 3167585536075969349Rat
1565445C16h13orf46similar to human chromosome 13 open reading frame 46167597450175987629Rat
61913Gas6growth arrest specific 6167604543076075904Rat
1566042Tmem255btransmembrane protein 255B167607984076108179Rat
619712Grk1G protein-coupled receptor kinase 1167612250176135792Rat
2178Atp4bATPase H+/K+ transporting subunit beta167614415076153063Rat
1560344Tfdp1transcription factor Dp-1167616204076200871Rat
7690836LOC102548465uncharacterized LOC102548465167620126376209340Rat
1306586Tmco3transmembrane and coiled-coil domains 3167621714676254309Rat
1582994Dcun1d2defective in cullin neddylation 1 domain containing 2167625443376281139Rat
1305641Adprhl1ADP-ribosylhydrolase like 1167628318676315075Rat
7637486LOC102548530uncharacterized LOC102548530167630377376307949Rat
41391748Map1lc3b-ps1microtubule-associated protein 1 light chain 3 beta, pseudogene 1167631728376319220Rat
7683974LOC102548586uncharacterized LOC102548586167632526976332633Rat
1309210Grtp1growth hormone regulated TBC protein 1167633277776356414Rat
2989Lamp1lysosomal-associated membrane protein 1167635598276380700Rat
1563853Cul4acullin 4A167638529876422316Rat
1307041Pcid2PCI domain containing 2167642324576448712Rat
1308666Prozprotein Z, vitamin K-dependent plasma glycoprotein167645001376463558Rat
61850F10coagulation factor X167646883476488141Rat
628678F7coagulation factor VII167648977576500636Rat
619782Mcf2lMCF.2 cell line derived transforming sequence-like167650713376652893Rat
1308688Atp11aATPase phospholipid transporting 11A167665775276767640Rat
7539061LOC102548949uncharacterized LOC102548949167676768876772070Rat
1305726Tubgcp3tubulin gamma complex component 3167685185976912499Rat
1597409Spaca7sperm acrosome associated 7167692861176955547Rat
41386858LOC120097560uncharacterized LOC120097560167697231476994674Rat
40999901LOC120097561uncharacterized LOC120097561167699893977000697Rat
41356486LOC120097565uncharacterized LOC120097565167709266577098467Rat
7704535LOC102553495uncharacterized LOC102553495167710001077214392Rat
6487636Sox1SRY-box transcription factor 1167713557777139592Rat
1565377Tex29testis expressed 29167765047177664171Rat
620624Arhgef7Rho guanine nucleotide exchange factor 7167767102177782593Rat
40985376LOC120097568uncharacterized LOC120097568167784579077866434Rat
1310501Ankrd10ankyrin repeat domain 10167786648977889745Rat
1306330Ing1inhibitor of growth family, member 1167793727677945320Rat
1311612Cars2cysteinyl-tRNA synthetase 2, mitochondrial167794546877987163Rat
1562691NaxdNAD(P)HX dehydratase167798614878004200Rat
7709112LOC102553902uncharacterized LOC102553902167801784378020944Rat
1593487Rab20RAB20, member RAS oncogene family167801933778043529Rat
1308085Col4a2collagen type IV alpha 2 chain167804759178183360Rat
1307148Col4a1collagen type IV alpha 1 chain167818353378294412Rat
41127978LOC120097569uncharacterized LOC120097569167828855978292112Rat
11386046Gapdh-ps18Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 18167832944778330562Rat
41306675LOC120097570uncharacterized LOC120097570167838119778387983Rat
7671145LOC102554055uncharacterized LOC102554055167842906478478247Rat
69316Irs2insulin receptor substrate 2167848824978512482Rat
7635207LOC102554173uncharacterized LOC102554173167851426278538268Rat
7669836LOC102554419uncharacterized LOC102554419167866153878664549Rat
41276233LOC120097571uncharacterized LOC120097571167880441378833770Rat
7626946LOC102554684uncharacterized LOC102554684167881062078819595Rat
40950904LOC120097572uncharacterized LOC120097572167885597778859239Rat
621561Myo16myosin XVI167888440579364445Rat
1561519Tnfsf13bTNF superfamily member 13b167946240679492888Rat
1308317Abhd13abhydrolase domain containing 13167950187979516712Rat
1304639Lig4DNA ligase 4167951839379526956Rat
41180448LOC120097573uncharacterized LOC120097573167957640379588728Rat
1565902Rps23-ps10ribosomal protein S23, pseudogene 10167965110079651518Rat
1559498Nalf1NALCN channel auxiliary factor 1167971357780236295Rat
41140945LOC120097419uncharacterized LOC120097419167978437579786516Rat
1587529Slc25a5-ps1solute carrier family 25 member 5, pseudogene 1168039783780406980Rat
7721989LOC102546303uncharacterized LOC102546303168063200480639847Rat
41169215LOC120097574uncharacterized LOC120097574168070221580707829Rat
1564807Ikzf5l1IKAROS family zinc finger 5 like 1168073377980736753Rat
1310061Arglu1arginine and glutamate rich 1168075330080777350Rat
1309497Efnb2ephrin B2168078338980827420Rat
1585181Susd3-ps1sushi domain containing 3, pseudogene 1168088962780891776Rat
7515276LOC102546842uncharacterized LOC102546842168159761581678914Rat
41096436LOC120097617small nucleolar RNA SNORA17168185968381859808Rat
41040854LOC120097478uncharacterized LOC120097478168212568382131480Rat
1585126Prelid1-ps6PRELI domain containing 1, pseudogene 6168216624082167278Rat
1590190Pdha1l1pyruvate dehydrogenase (lipoamide) alpha 1-like 1168251148382514378Rat
1565806Rpl23al2ribosomal protein L23A like 2168273454782735002Rat
11445347LOC108348321high mobility group protein B1 pseudogene168274920782749841Rat
41047022LOC120097576uncharacterized LOC120097576168286015382942332Rat
1590847Rpl7a-ps14ribosomal protein L7a, pseudogene 14168306420183064681Rat
1587229LOC501448similar to Der1-like domain family, member 1168315027383151020Rat
1590846Cct6a-ps9chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 9168332537883326964Rat
41037906LOC120097657U6 spliceosomal RNA168375038983750496Rat
6502421LOC100909690ubiquitin-like protein FUBI-like168429343884293770Rat
3682Slc10a2solute carrier family 10 member 2168438652884409475Rat
1590076Ezr-ps1Ezrin, pseudogene 1168441550284427470Rat
1582904Kansl2-ps5KAT8 regulatory NSL complex subunit 2, pseudogene 5168458578884588486Rat
41120593Gapdh-ps52Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 52168466308584665711Rat
1590844Shcbp1SHC binding and spindle associated 1168467227784703843Rat
9225356LOC103694015NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene168226345482275916Rat
9470088LOC103694002uncharacterized LOC103694002167699976277027871Rat
9316353LOC103694008uncharacterized LOC103694008167885233878855209Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10841D16Wox13115164697584246975959Ratregion
10842D16Mgh5162164697580146975965Ratregion
33834D18Mit18199168312292983123130Ratregion
34007D16Mit3143164423590444236047Ratregion
34066D16Mgh1235164302484243025077Ratregion
34298D9Mgh1112166842058968420707Ratregion
34553D16Mgh6100164586839745868497Ratregion
36360D16Mit6285168061157280611857Ratregion
35553D16Rat16172167122567271225844Ratregion
36988D16Rat15135167522639775226532Ratregion
37054D16Rat17188165016582850166018Ratregion
37786D16Rat25141167069224870692389Ratregion
37820D16Rat28222165651345656513678Ratregion
36608D16Rat48154167502981075029966Ratregion
34894D16Rat29143164605335446053497Ratregion
34959D16Rat14134167061084970610983Ratregion
35022D16Rat101163166441948064419656Ratregion
35022D16Rat101163166446426264464425Ratregion
35158D16Rat13157167318714173187298Ratregion
39642D16Rat63198165875570558755903Ratregion
39822D16Rat94227167346533973465568Ratregion
39838D16Rat109202166014824360148445Ratregion
39846D16Rat92164168064973980649903Ratregion
39866D16Rat93177167931681179316988Ratregion
39936D16Rat96203164700891247009115Ratregion
40524D16Rat67220164682540246825624Ratregion
40632D16Rat57220166883022368830445Ratregion
38428D16Rat53117166237240362372520Ratregion
38444D16Rat90208168034548580345693Ratregion
40030D16Rat98144164729970747299837Ratregion
40166D16Rat65149165805880458058953Ratregion
40234D16Rat60148166025208160252231Ratregion
40320D16Rat66135165778880357788938Ratregion
38888D16Rat45231164524214945242380Ratregion
38892D16Rat23206166515867565158881Ratregion
38938D16Rat40203165673363456733837Ratregion
38988D16Rat27197165769414657694345Ratregion
39010D16Rat34244166820797168208215Ratregion
39288D16Rat37226167096851970968745Ratregion
39390D16Rat64219165571108755711306Ratregion
42016D16Arb276167134074471340820Ratregion
42028D16Arb8120164586837445868494Ratregion
41248D16Rat58173166489625964896432Ratregion
41264D16Rat61151166036570560365856Ratregion
41324D16Rat55178167178125271781430Ratregion
41344D16Rat59133166490477464904907Ratregion
41526D16Rat62172165534091555341087Ratregion
43072D16Rat116215164897251248972724Ratregion
43073D16Rat114218165649778656498005Ratregion
43075D16Rat100209166505547065055680Ratregion
42410D16Rat129219164524119245241409Ratregion
42412D16Rat130232167385525473855486Ratregion
42413D16Rat126203167770131877701521Ratregion
40796D16Rat56237166893799268938229Ratregion
40820D1Rat310234165752881057529045Ratregion
41034D16Rat95209165353399053534189Ratregion
41682D16Rat108192166667609966676291Ratregion
41766D16Rat110110165203390252034012Ratregion
60770D16Wox674165866050758660581Ratregion
60771D16Wox8103168340236883402471Ratregion
60125D16Got44225164672004846720273Ratregion
60128D16Got63195166557058865570785Ratregion
60129D16Got69154166587067965870833Ratregion
60130D16Got77298166990171669902014Ratregion
60131D16Got81108167260593272606040Ratregion
45342D16Got36142164329606043296202Ratregion
45347D16Got38247164526597945266226Ratregion
45348D16Got40220164728839447288612Ratregion
45351D16Got43119164788228147882400Ratregion
45352D16Got45137164765416847654304Ratregion
45353D16Got39276164774362547743901Ratregion
45354D16Got41196164859680148596997Ratregion
45356D16Got47121164814731948147441Ratregion
45357D16Wox4152164814398248144134Ratregion
45358D16Got46154164937164149371795Ratregion
45359D16Got55195165177709951777294Ratregion
45361D16Got50219165286503052865249Ratregion
45363D16Got54151165665032856650479Ratregion
45364D16Got52198165510588255106080Ratregion
45365D16Got97226165741324957413475Ratregion
45366D16Got53193165599659055996783Ratregion
45367D16Got59275165742218157422456Ratregion
45368D16Got58141165995813659958277Ratregion
45369D16Wox7107165949240159492508Ratregion
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5502092MARC_31601-31602:1045759847:1371166665458466654955Ratregion
5501968MARC_21337-21338:1023126946:11093165566776655668859Ratregion
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Position Markers

Peak: (D16Rat58)
Rat AssemblyChrPosition (strand)Source
GRCr81671,599,110 - 71,599,283 (+)Marker Load Pipeline
mRatBN7.21664,896,259 - 64,896,432 (+)MAPPER
Rnor_6.01669,058,102 - 69,058,274NCBI
Rnor_5.01668,734,116 - 68,734,288UniSTS
RGSC_v3.41669,218,593 - 69,218,765UniSTS
RGSC_v3.41669,218,407 - 69,218,766RGD
RGSC_v3.11669,218,613 - 69,218,972RGD
Celera1662,816,493 - 62,816,665UniSTS
SHRSP x BN Map1630.54UniSTS
SHRSP x BN Map1630.54RGD
Cytogenetic Map16q12.3-q12.4UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
1298527Arunc2Aerobic running capacity QTL 22.9exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)166853271675029966Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type F2 of reciprocal crosses 2306974
qtl_general number of animals used: 106 3-4 month old and 126 6 month old F 2 males 2306974
qtl_general software used: statistical analysis by Statistica 6.0; Linkage analysis by MAPMAKER/EXP3.0 and MAPMAKER/QTL 1.1 2306974
qtl_general this region accounts for 17.5% of the motor activity variability in the first minute 2306974
qtl_general measurement method: rats were placed on an illuminated rectangular area surrounded by plexiglass and divided into squares with a metal cylinder placed in the center; behavior was determined by counting the number of squares crossed in 6 minutes 2306974
qtl_general measurement method: plasma corticosterone level was measured at rest and after stress 2306974