Eae4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Eae4 (Experimental allergic encephalomyelitis QTL 4) Rattus norvegicus

Symbol: Eae4
Name: Experimental allergic encephalomyelitis QTL 4
RGD ID: 70226
Previously known as: Experimental Autoimmune (allergic) Encephalomyelitis (immunization with spinal cord + adjuvant) QTL 4
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis incidence/prevalence measurement   (CMO:0001046)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr895,474,096 - 6,714,888RGD_MAPPER_PIPELINE
mRatBN7.291 - 25,661,317RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.091 - 29,467,098RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0928,304,251 - 46,197,383RGDRnor5.0
RGSC_v3.491,526,958 - 22,066,101RGDRGSC3.4
RGSC_v3.191,526,958 - 22,067,655RGD
Cross Type: F2
Strains Crossed: BN DA 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Vav1 is a candidate Gene for Eae4

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN  (IEA)
DA  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome-wide linkage analysis of chronic relapsing experimental autoimmune encephalomyelitis in the rat identifies a major susceptibility locus on chromosome 9. Dahlman I, etal., J Immunol 1999 Mar 1;162(5):2581-8.
2. A role for VAV1 in experimental autoimmune encephalomyelitis and multiple sclerosis. Jagodic M, etal., Sci Transl Med. 2009 Dec 9;1(10):10ra21. doi: 10.1126/scitranslmed.3000278.
3. QTL Data Transfer QTL data import from the RatMap database
Related QTLs

Related QTL Description Reference
Iresp3 maps to same region RGD:69712


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41314784Arhgap20-ps1Rho GTPase activating protein 20, pseudogene 19350679356712Rat
9092856LOC103691580uncharacterized LOC1036915809361381366432Rat
1587228Ralbp1-ps1ralA binding protein 1, pseudogene 19369017372317Rat
41183083Naa11-ps17N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 179412259412903Rat
1586098Nid2-ps14nidogen 2, pseudogene 149534980555257Rat
628680Uxs1UDP-glucuronate decarboxylase 19653740731121Rat
6490497Rps8-ps14ribosomal protein S8, pseudogene 149663722664348Rat
7694240Zfp119blzinc finger protein 119b like9746126775933Rat
41079714LOC120094900small nucleolar RNA SNORA489756175756311Rat
1589467Ebi3Epstein-Barr virus induced 39774252787544Rat
2324265Rps21-ps2ribosomal protein S21, pseudogene 29778351781683Rat
1589601Yju2YJU2 splicing factor9789603799505Rat
1590885Shdsrc homology 2 domain-containing transforming protein D9799652809769Rat
1583850Fsd1fibronectin type III and SPRY domain containing 19818241821761Rat
1566020Stap2signal transducing adaptor family member 29828369838648Rat
1589335MpndMPN domain containing9839473846446Rat
708456Sh3gl1SH3 domain containing GRB2 like 1, endophilin A29842285869753Rat
1590865Chaf1achromatin assembly factor 1 subunit A9873953900701Rat
1590866Ubxn6UBX domain protein 69900883906047Rat
621013Hdgfl2HDGF like 29909581929195Rat
1590867Plin4perilipin 49929168938062Rat
1589602Plin5perilipin 59939745946188Rat
1359464Lrg1leucine-rich alpha-2-glycoprotein 19947516949773Rat
69278Sema6bsemaphorin 6B9950939967905Rat
1588574Tnfaip8l1TNF alpha induced protein 8 like 19988587999342Rat
1589603Mydgfmyeloid-derived growth factor99996591008804Rat
1588575Dpp9dipeptidyl peptidase 9910113471046337Rat
9462719LOC103693194uncharacterized LOC103693194910463671049446Rat
1591762Rpl35l3ribosomal protein L35 like 3910781911088987Rat
2325434Mir9microRNA 9910802741080383Rat
41256487LOC120094864U6 spliceosomal RNA910807461080852Rat
1561112Fem1afem-1 homolog A910916951093901Rat
1590868Ticam1TIR domain containing adaptor molecule 1911025591111023Rat
1595854Plin3perilipin 3911111781123057Rat
1591748Arrdc5arrestin domain containing 5911266441132736Rat
1595855Uhrf1ubiquitin-like with PHD and ring finger domains 1911331171154639Rat
2323707Rps27l3ribosomal protein S27 like 3911547811157065Rat
1588576Kdm4blysine demethylase 4B911587371237233Rat
11473325Trnak-cuu11transfer RNA lysine (anticodon CUU) 11912111441211216Rat
3452Ptprsprotein tyrosine phosphatase, receptor type, S912454081307015Rat
1563631Znrf4zinc and ring finger 4913533081354496Rat
9685200TincrTINCR ubiquitin domain containing913871051389337Rat
1588577Safb2scaffold attachment factor B2913958521417010Rat
620613Safbscaffold attachment factor B914174491438408Rat
1588578Micos13mitochondrial contact site and cristae organizing system subunit 13914398411441782Rat
62085Rpl36ribosomal protein L36914419861447397Rat
621598Lonp1lon peptidase 1, mitochondrial914474441459771Rat
1594167Catsperdcation channel sperm associated auxiliary subunit delta914599671498342Rat
1589604Ranbp3RAN binding protein 3915072331544460Rat
41237504Capscalcyphosine915445971545631Rat
1303340Vmacvimentin-type intermediate filament associated coiled-coil protein915467471550417Rat
1303292Ndufa11NADH:ubiquinone oxidoreductase subunit A11915504871554546Rat
1588473Fut4-ps1fucosyltransferase 4, pseudogene 1915696051572022Rat
621494Nrtnneurturin915818601587835Rat
1563228Dus3ldihydrouridine synthase 3-like915934911598663Rat
1595447Prr22proline rich 22915991691601003Rat
1588579Rfx2regulatory factor X2916046361671220Rat
41282109LOC120094598uncharacterized LOC120094598916455991648694Rat
1589605Myl12b-ps2myosin light chain 12B, pseudogene 2916783361679276Rat
1588580Acsbg2acyl-CoA synthetase bubblegum family member 2916838461715517Rat
1595856Acsbg3acyl-CoA synthetase bubblegum family member 3917156131727637Rat
1588581Mllt1MLLT1, super elongation complex subunit917310771775985Rat
41213696LOC120094875U7 small nuclear RNA917514281751490Rat
41215231Bnip3-ps5BCL2 interacting protein 3, pseudogene 5917880411788770Rat
1588582Acer1alkaline ceramidase 1917943401824432Rat
1588583Clppcaseinolytic mitochondrial matrix peptidase proteolytic subunit918316801837700Rat
1598126Alkbh7alkB homolog 7918388861841044Rat
3432Pspnpersephin918409061841748Rat
1359646Gtf2f1general transcription factor IIF subunit 1918440271853455Rat
621828KhsrpKH-type splicing regulatory protein918625551872403Rat
1588585Slc25a41solute carrier family 25, member 41918736921881405Rat
1588586Slc25a23solute carrier family 25 member 23918826361898369Rat
1565035Crb3crumbs cell polarity complex component 3918985311903860Rat
1590869Dennd1cDENN domain containing 1C919040401916329Rat
619730Tubb4atubulin, beta 4A class IVa919178411925286Rat
40940879LOC120094884U1 spliceosomal RNA919317161931879Rat
727974Tnfsf9TNF superfamily member 9919440171946351Rat
1588543Brcc3BRCA1/BRCA2-containing complex subunit 3919869421989484Rat
1588573Cd70Cd70 molecule920065632009715Rat
1588572Tnfsf14TNF superfamily member 14920682952073128Rat
2232C3complement C3920874372114366Rat
735149Gpr108G protein-coupled receptor 108921207402131771Rat
621145Trip10thyroid hormone receptor interactor 10921330852147795Rat
2322080Sh2d3aSH2 domain containing 3A921488032158150Rat
3951Vav1vav guanine nucleotide exchange factor 1921619852209951Rat
1359214Adgre1adhesion G protein-coupled receptor E1922424762398000Rat
7651541Hspa14-ps1heat shock protein family A (Hsp70) member 14, pseudogene 1922662852282720Rat
9391503LOC103690497U1 small nuclear ribonucleoprotein C pseudogene923542732354832Rat
1626052Vom2r-ps140vomeronasal 2 receptor, pseudogene 140924364302449682Rat
1588571Vom2r79vomeronasal 2 receptor, 79925058972553420Rat
1592341Vom2r-ps141vomeronasal 2 receptor, pseudogene 141925977032598602Rat
41402348Spetex2el6Spetex-2E protein like 6926188462636236Rat
41024372Pym1-ps6PYM homolog 1, exon junction complex associated factor, pseudogene 6926297702630658Rat
41041708Derl1-ps1derlin 1, pseudogene 1926532082655994Rat
41286286Spetex2dl1Spetex-2D protein like 1926796342683539Rat
41381625Derl1-ps3derlin 1, pseudogene 3926982822699629Rat
41293541Spetex2dl2Spetex-2D protein like 2927234222732885Rat
6489022Pym1-ps16PYM homolog 1, exon junction complex associated factor, pseudogene 16927346382735529Rat
41309847Derl1-ps2derlin 1, pseudogene 2927596502761098Rat
1589919Rcn1-ps18reticulocalbin 1, pseudogene 18927735362775324Rat
41255155Pcbp4-ps4poly(rC) binding protein 4, pseudogene 4927798932781482Rat
41009526Spetex2el7Spetex-2E protein like 7927856782793791Rat
41219852Pym1-ps7PYM homolog 1, exon junction complex associated factor, pseudogene 7928200412822123Rat
1594784Spetex2el1Spetex-2E protein like 1928494532889694Rat
2321302Spetex2l2Spetex-2 protein like 2929076642916404Rat
11447770Spetex2el2Spetex-2E protein like 2929253032935352Rat
41204078Rcn1-ps14reticulocalbin 1, pseudogene 14929460592947361Rat
41156996LOC120094610derlin-1-like929538292955222Rat
41342146LOC120094615uncharacterized LOC120094615930091093017536Rat
41298242Spetex2el10Spetex-2E protein like 10930294263052318Rat
41269133Derl1-ps4derlin 1, pseudogene 4930711233072058Rat
41156720Rcn1-ps8reticulocalbin 1, pseudogene 8930854493087638Rat
41198719Pcbp4-ps5poly(rC) binding protein 4, pseudogene 5930922003093599Rat
41390282Spetex2el5Spetex-2E protein like 5930975823106904Rat
41298228Spetex2el9Spetex-2E protein like 9931157533129689Rat
2318601C1h9orf40-ps1similar to human chromosome 9 open reading frame 40, pseudogene 1931443063145830Rat
7657956LOC102554555uncharacterized LOC102554555931770153216869Rat
41061308LOC120094622uncharacterized LOC120094622932296813242765Rat
41046919LOC120094621uncharacterized LOC120094621932419683264057Rat
1305941Plcl2phospholipase C-like 2932925643477009Rat
1561626Tbc1d5TBC1 domain family, member 5935033284017131Rat
41370247Ndufb1-ps1NADH:ubiquinone oxidoreductase subunit B1, pseudogene 1935950303595591Rat
7751678Rpl10-ps10ribosomal protein L10, pseudogene 10936163773621886Rat
41168059LOC120094782uncharacterized LOC120094782936842543705902Rat
2323094Rps20-ps12ribosomal protein S20, pseudogene 12941590734159432Rat
41161618LOC120094889small nucleolar RNA SNORA44942814814281609Rat
11357182LOC10835201660S ribosomal protein L26 pseudogene943833894383798Rat
1305561Satb1SATB homeobox 1946778174773061Rat
1562851Rpl31-ps7ribosomal protein L31, pseudogene 7948447734845186Rat
2323380Fcf1-ps6Fcf1 rRNA-processing protein, pseudogene 6949327784949393Rat
2549Kcnh8potassium voltage-gated channel subfamily H member 8955060445945828Rat
40981102LOC120094948U1 spliceosomal RNA957772475777398Rat
41072519Rps17-ps11ribosomal protein S17, pseudogene 11958984675905781Rat
41266739LOC120094624uncharacterized LOC120094624959646216246324Rat
1559808Rps26-ps12ribosomal protein S26, pseudogene 12960190316020447Rat
7538729Cfl1-ps4cofilin 1, pseudogene 4960564456057501Rat
1562800Spetex2l1Spetex-2 protein like 1961724896180127Rat
2323495Gosr1-ps1golgi SNAP receptor complex member 1, pseudogene 1962500516250572Rat
1596997Rbbp4-ps1RB binding protein 4, chromatin remodeling factor, pseudogene 1962818786283078Rat
1566407EfhbEF hand domain family, member B963721916441678Rat
9400366LOC103690615transmembrane protein 234-like963822126382523Rat
41399553LOC120094882small nucleolar RNA SNORA70963843726384506Rat
41144581Trnas-aga49transfer RNA serine (anticodon AGA) 49964455866445666Rat
620936Rab5aRAB5A, member RAS oncogene family964839066512877Rat
1564811Pp2d1protein phosphatase 2C-like domain containing 1965122826533653Rat
1305902Kat2blysine acetyltransferase 2B965625256667064Rat
41403358LOC120094907small nucleolar RNA SNORA48966078666608000Rat
1593238Sgo1shugoshin 1966721096687908Rat
15649864932415M13RiklRIKEN cDNA 4932415M13 gene like967079916732613Rat
621064Sult1c2sulfotransferase family 1C member 2968248406848830Rat
1305885Sult1c2asulfotransferase family 1C member 2A968736976904736Rat
40953770LOC120094625uncharacterized LOC120094625969564486962274Rat
41320429LOC120093086sulfotransferase 1C2-like969626047131268Rat
1559960Sult1c2al1sulfotransferase family 1C member 2A like 1971612167203145Rat
3768Sult1c3sulfotransferase family 1C member 3972215807266991Rat
1560901Acta1-ps2actin, alpha 1, skeletal muscle, pseudogene 2975012257502327Rat
69270Slc5a7solute carrier family 5 member 7975954407626258Rat
1592929Eif4g1-ps2eukaryotic translation initiation factor 4 gamma 1, pseudogene 2978568797861321Rat
1589660Taldo1-ps1transaldolase 1, pseudogene 1982753008276318Rat
2322325Fbxw2-ps1F-box and WD repeat domain containing 2, pseudogene 1983847868389434Rat
41279270Fbxw2-ps4F-box and WD repeat domain containing 2, pseudogene 4983940838398728Rat
6496783Fbxw2-ps3F-box and WD repeat domain containing 2, pseudogene 3984033958408043Rat
9112006Rpl27al9ribosomal protein L27A like 9985164298517495Rat
41143660Hnrnpd-ps2heterogeneous nuclear ribonucleoprotein D, pseudogene 2987123408713866Rat
1559663St6gal2ST6 beta-galactoside alpha-2,6-sialyltransferase 2991817449274161Rat
1588569Vom2r76vomeronasal 2 receptor, 76994679619492317Rat
7556959Sik3-ps1SIK family kinase 3, pseudogene 1995068299510000Rat
1582883Vom2r77vomeronasal 2 receptor, 77995728749638896Rat
1582873Pot1bprotection of telomeres 1B996703559728624Rat
40935681LOC120094870U6 spliceosomal RNA996740979674202Rat
7642378N4bp1-ps2Nedd4 binding protein 1, pseudogene 2997173159720322Rat
1359641Adgre4adhesion G protein-coupled receptor E4997581069901908Rat
11438663LOC10835187660S ribosomal protein L7 pseudogene997649519765788Rat
1590872Vom2r-ps138vomeronasal 2 receptor, pseudogene 138999264929946415Rat
1583959LOC691414hypothetical protein LOC691414999547209964136Rat
9281506Spetex2gl1Spetex-2G protein like 19997335310002936Rat
11396250Spetex2el3Spetex-2E protein like 391002522110036771Rat
41389612LOC120094832ERC protein 2-like91005061210051922Rat
41041357Rcn1-ps7reticulocalbin 1, pseudogene 791006702710067832Rat
1588537Spetex-2fl1Spetex-2F protein like 191007694910085216Rat
1591345Girdinl1girders of actin filaments like 191066477010683943Rat
1591714Dazldeleted in azoospermia-like91069559310712330Rat
1563347Rftn1raftlin lipid raft linker 191080461111002084Rat
1584839Kcnk16-ps1potassium two pore domain channel subfamily K member 16, pseudogene 191105906911064995Rat
621070Kif6kinesin family member 691107620311373205Rat
1306128Daam2dishevelled associated activator of morphogenesis 291142891311546982Rat
1308471Mocs1molybdenum cofactor synthesis 191154753311573935Rat
41285703LOC120094630uncharacterized LOC12009463091157517911591773Rat
11484729LOC108351887uncharacterized LOC10835188791165233911678809Rat
6494554Rpl5-ps2ribosomal protein L5, pseudogene 291166787811669951Rat
40988429LOC120094938U1 spliceosomal RNA91170829711708457Rat
41218959LOC120094631uncharacterized LOC12009463191181960811833871Rat
2322726Kin-ps1Kin17 DNA and RNA binding protein, pseudogene 191183393011835584Rat
7650881LOC102547352uncharacterized LOC10254735291188214611883458Rat
1311831Lrfn2leucine rich repeat and fibronectin type III domain containing 291189742512066177Rat
7683517LOC102547709uncharacterized LOC10254770991225737912272305Rat
41031628LOC120094909small nucleolar RNA SNORA1791238394412384075Rat
7706024LOC102547840uncharacterized LOC10254784091241534912423539Rat
41295786LOC120094632uncharacterized LOC12009463291241647712417396Rat
7570521LOC102548200uncharacterized LOC10254820091244695312450780Rat
1587368Unc5clunc-5 family C-terminal like91252810912543382Rat
1594018Tspo2translocator protein 291254461512548563Rat
1308727Apobec2apolipoprotein B mRNA editing enzyme catalytic subunit 291256495512578461Rat
1308299Oard1O-acyl-ADP-ribose deacylase 191257689412587264Rat
70976Nfyanuclear transcription factor Y subunit alpha91258743712613911Rat
1565175Treml1triggering receptor expressed on myeloid cells-like 191263558412642324Rat
1309841Trem2triggering receptor expressed on myeloid cells 291264760512654190Rat
7629065LOC102548435uncharacterized LOC10254843591266494012672794Rat
1307182B430306N03RiklRIKEN cDNA B430306N03 gene91268129012690555Rat
1587039Treml2triggering receptor expressed on myeloid cells-like 291269445312705379Rat
1587021Treml4triggering receptor expressed on myeloid cells-like 491271896812743879Rat
1305477Trem3triggering receptor expressed on myeloid cells 391274982112762547Rat
1309467Trem1triggering receptor expressed on myeloid cells 191276381912779285Rat
1311406Ncr2natural cytotoxicity triggering receptor 291277719512828437Rat
1585869Ncr2l1natural cytotoxicity triggering receptor 2 like 191284354212858881Rat
41022215LOC120094839uncharacterized LOC12009483991285926412864171Rat
1565959RGD1565959RGD156595991287369712886364Rat
15858341700067P10RiklRIKEN cDNA 1700067P10 gene like91289529412896592Rat
64928821700122O11RiklRIKEN cDNA 1700122O11 gene like91293744412943012Rat
7594246LOC102554116uncharacterized LOC10255411691303256913038429Rat
1311386Foxp4forkhead box P491305850613115406Rat
1560271MdfiMyoD family inhibitor91315680613175218Rat
1309583Tfebtranscription factor EB91319889013254726Rat
3943Pgcprogastricsin91325746213265682Rat
7710987LOC102554309uncharacterized LOC10255430991326177413266883Rat
1310226Frs3fibroblast growth factor receptor substrate 391328855913297285Rat
1563979Prickle4prickle planar cell polarity protein 491329749413305635Rat
1583567Tomm6translocase of outer mitochondrial membrane 691330426913305637Rat
1310513Usp49ubiquitin specific peptidase 4991330564013366132Rat
1306415Med20mediator complex subunit 2091337014613382756Rat
727959Byslbystin-like91338280613392557Rat
2293Ccnd3cyclin D391339416113400341Rat
41179785LOC120094634uncharacterized LOC12009463491341234313489689Rat
1308423Taf8TATA-box binding protein associated factor 891349189213511713Rat
1561662C9h6orf132similar to human chromosome 6 open reading frame 13291352482213561756Rat
6485345Cimip3ciliary microtubule inner protein 391356066913582987Rat
40926438LOC120094981U6 spliceosomal RNA91358758613587697Rat
1308712Guca1aguanylate cyclase activator 1A91358898813598566Rat
1308191Guca1bguanylate cyclase activator 1B91359961913607455Rat
1311516Mrps10mitochondrial ribosomal protein S1091361489713624819Rat
1307167Trerf1transcriptional regulating factor 191363161913858326Rat
41291055LOC120094873U6 spliceosomal RNA91380992913810029Rat
41188929LOC120094859U6 spliceosomal RNA91389540213895505Rat
1593237Ubr2ubiquitin protein ligase E3 component n-recognin 291398242714062315Rat
41372167LOC120094984U6 spliceosomal RNA91405162814051732Rat
3549Prph2peripherin 291406614914081454Rat
1306756Tbcctubulin folding cofactor C91409885514100043Rat
1305680BicralBICRA like chromatin remodeling complex associated protein91410025314185368Rat
1308469Rpl7l1ribosomal protein L7-like 191419810114206119Rat
41065341LOC120093043small nucleolar RNA SNORA1991420347414203604Rat
1596723Pex39peroxisomal biogenesis factor 3991420798814209134Rat
621388Ptcrapre T-cell antigen receptor alpha91421890714229141Rat
1597709Cnpy3canopy FGF signaling regulator 391423347814247847Rat
2719Gnmtglycine N-methyltransferase91425467514258028Rat
621637Pex6peroxisomal biogenesis factor 691425814514270335Rat
1306666Ppp2r5dprotein phosphatase 2, regulatory subunit B', delta91427036414300396Rat
1597751Mea1male-enhanced antigen 191430028314304130Rat
1307105Klhdc3kelch domain containing 391430234514308736Rat
2321693Rrp36ribosomal RNA processing 3691430895614316959Rat
1587048Cul7cullin 791431910214333035Rat
1307147Mrpl2mitochondrial ribosomal protein L291433323314337006Rat
1306555Klc4kinesin light chain 491433716414351075Rat
1310472Ptk7protein tyrosine kinase 791435215514418473Rat
41050827LOC120094784uncharacterized LOC12009478491442431014426287Rat
1559787Srfserum response factor91442645314435734Rat
1562008Cul9cullin 991443594814479552Rat
620382Dnph12'-deoxynucleoside 5'-phosphate N-hydrolase 191448129614484034Rat
1559518Ttbk1tau tubulin kinase 191449316614538372Rat
621699Slc22a7solute carrier family 22 member 791454707314554354Rat
1565018Crip3cysteine-rich protein 391455445014557344Rat
1583221Zfp318zinc finger protein 31891456295814601557Rat
41113996LOC120094785uncharacterized LOC12009478591460058414622471Rat
1306696Abcc10ATP binding cassette subfamily C member 1091465724214677178Rat
1309143Dlk2delta like non-canonical Notch ligand 291467710214681584Rat
41251599LOC120094867U6 spliceosomal RNA91469494714695052Rat
1308708Tjap1tight junction associated protein 191470141814725623Rat
1561390Lrrc73leucine rich repeat containing 7391472615714730144Rat
1308185Yipf3Yip1 domain family, member 391473028914735644Rat
1309689Polr1cRNA polymerase I and III subunit C91473574014739852Rat
1311522Xpo5exportin 591474018214778171Rat
1309893PolhDNA polymerase eta91477835514813210Rat
9295718LOC103690509activated RNA polymerase II transcriptional coactivator p15 pseudogene91480024014802871Rat
1306367Gtpbp2GTP binding protein 291481396414823419Rat
2306314Rps2-ps6ribosomal protein S2, pseudogene 691482672914827651Rat
1309175Mad2l1bpMAD2L1 binding protein91483213314836458Rat
1310693Rsph9radial spoke head component 991484011514852950Rat
735229Mrps18amitochondrial ribosomal protein S18A91485332214869819Rat
619991Vegfavascular endothelial growth factor A91495530014970641Rat
7526556LOC102550162uncharacterized LOC10255016291510214115135118Rat
40995448LOC120094788uncharacterized LOC12009478891518871815190122Rat
41372763LOC12009478940S ribosomal protein S29-like91520739015209191Rat
7671069LOC102550363uncharacterized LOC10255036391523935115259876Rat
9095701LOC103690501uncharacterized LOC10369050191527904415280845Rat
1306240Mrpl14mitochondrial ribosomal protein L1491530284015315195Rat
1305862Tmem63btransmembrane protein 63B91531386715340722Rat
1302946Capn11calpain 1191534405915365604Rat
11426996Mymxmyomixer, myoblast fusion factor91539708615398263Rat
61899Slc29a1solute carrier family 29 member 191539966115414203Rat
1303075Hsp90ab1heat shock protein 90 alpha family class B member 191543298615438358Rat
1565318Slc35b2solute carrier family 35 member B291543859415442227Rat
735070NfkbieNFKB inhibitor epsilon91544360015450437Rat
1562074Tmem151btransmembrane protein 151B91545644615464289Rat
1305744Tcte1t-complex-associated testis expressed 191546357315482258Rat
1310617Aars2alanyl-tRNA synthetase 2, mitochondrial91548463915496116Rat
11376343LOC108351892uncharacterized LOC10835189291548649215493269Rat
631367Spats1spermatogenesis associated, serine-rich 191552717915562286Rat
70892Cdc5lcell division cycle 5-like91556494915603453Rat
11470506LOC108351893uncharacterized LOC10835189391559848615607891Rat
41127923LOC120094887small nucleolar RNA SNORA36 family91572372115723851Rat
41116177LOC120094792uncharacterized LOC12009479291574755815751915Rat
41349498LOC120094635uncharacterized LOC12009463591582535615830665Rat
1596995Yju2-ps1YJU2 splicing factor, pseudogene 191583190715835273Rat
1591316Supt3hSPT3 homolog, SAGA and STAGA complex component91587829616206768Rat
1590246Polr1hasRNA polymerase I subunit H, antisense91609862416099790Rat
2282Runx2RUNX family transcription factor 291616750416492826Rat
41069681LOC120094793uncharacterized LOC12009479391624432516245932Rat
41012750LOC120094636uncharacterized LOC12009463691657019416589380Rat
11432264LOC108351894uncharacterized LOC10835189491668964916700163Rat
620659Clic5chloride intracellular channel 591671098016813502Rat
41403460LOC120094638uncharacterized LOC12009463891672272016737939Rat
41005958LOC120094637uncharacterized LOC12009463791674266316765020Rat
11477544LOC108351895uncharacterized LOC10835189591681879716827112Rat
7587989LOC102555783uncharacterized LOC10255578391687721816888739Rat
1308689Enpp4ectonucleotide pyrophosphatase/phosphodiesterase 491688892316898860Rat
1359199Enpp5ectonucleotide pyrophosphatase/phosphodiesterase family member 591691018716917633Rat
69198Rcan2regulator of calcineurin 291695947817174823Rat
1307471Cyp39a1cytochrome P450, family 39, subfamily a, polypeptide 191723045517306775Rat
41220628LOC120094639uncharacterized LOC12009463991725419617257745Rat
620787Slc25a27solute carrier family 25, member 2791730689817333942Rat
1305956Tdrd6tudor domain containing 691734403317359348Rat
1310734Pla2g7phospholipase A2 group VII91736221417404476Rat
1560151Ankrd66ankyrin repeat domain 6691742143217441212Rat
41116623LOC120094640uncharacterized LOC12009464091743427317459213Rat
3080Mep1ameprin A subunit alpha91747463417504147Rat
621679Adgrf5adhesion G protein-coupled receptor F591751759617624107Rat
1310285Adgrf1adhesion G protein-coupled receptor F191766125817696359Rat
41053828LOC120094840uncharacterized LOC12009484091774401517747544Rat
41343382Atp5mg-ps1ATP synthase membrane subunit g, pseudogene 191776067617760986Rat
41272310LOC120094841uncharacterized LOC12009484191779406017801338Rat
1307308Tnfrsf21TNF receptor superfamily member 2191787915617954085Rat
727803Cd2apCD2-associated protein91808674418182744Rat
1306718Adgrf2adhesion G protein-coupled receptor F291823838918248745Rat
1565216Adgrf4adhesion G protein-coupled receptor F491827205018303219Rat
727869Opn5opsin 591836839318416098Rat
40929597Trnat-agu32transfer RNA threonine (anticodon AGU) 3291839905618399136Rat
1563020Ptchd4patched domain containing 491846293418666272Rat
41148077LOC120094642uncharacterized LOC12009464291988249019909177Rat
1587662Mmutmethylmalonyl-CoA mutase91992872019956985Rat
1359451Cenpqcentromere protein Q91995712219972807Rat
1587643Glyatl3glycine-N-acyltransferase-like 391997749319995723Rat
1588829C9h6orf141similar to human chromosome 6 open reading frame 14192002491620029094Rat
1564244Cyp2ac1cytochrome P450, family 2, subfamily ac, polypeptide 192003582320058570Rat
61871RhagRh-associated glycoprotein92006980020097836Rat
621653Crisp2cysteine-rich secretory protein 292010764920131967Rat
9450374LOC103690514exocrine gland-secreted peptide 1-like92014367220150293Rat
11390506Rpl36a-ps6ribosomal protein L36A, pseudogene 692018293820195730Rat
11433453LOC108351994exocrine gland-secreted peptide 1-like92020572720212941Rat
1586485Uqcrb-ps2ubiquinol-cytochrome c reductase binding protein, pseudogene 292035341420353798Rat
619846Crisp3cysteine-rich secretory protein 392043205120472663Rat
40999450LOC120094644uncharacterized LOC12009464492046236620468036Rat
1306627Pgk2phosphoglycerate kinase 292048036720481933Rat
41032701LOC120094842uncharacterized LOC12009484292054784420555930Rat
41297475LOC120094927U1 spliceosomal RNA92058290620583063Rat
41131560Ubbl3ubiquitin B like 392066143520662315Rat
11397802LOC108351900uncharacterized LOC10835190092066334820670645Rat
41309930LOC120094646uncharacterized LOC12009464692070335220714779Rat
1590757Crisp1cysteine-rich secretory protein 192074177520768796Rat
1560245Defb49defensin beta 4992083268620837352Rat
1559758Defb18defensin beta 1892085223020853247Rat
1562466Defb16-psdefensin beta 16 pseudogene92087506420883875Rat
1565718Defb17defensin beta 1792088024620883875Rat
1585305Prmt1-ps3protein arginine methyltransferase 1, pseudogene 392129985121301148Rat
41106882LOC120094874U7 small nuclear RNA92131650421316566Rat
40979134LOC120094879U7 small nuclear RNA92131665421316712Rat
9222779LOC103690504ubiquitin-conjugating enzyme E2 N-like92135783621358387Rat
41216390LOC120094920small nucleolar RNA SNORA1792152044521520572Rat
1304864Tfap2dtranscription factor AP-2 delta92168057721744840Rat
1306321Tfap2btranscription factor AP-2 beta92178625121816054Rat
1308476Pkhd1PKHD1 ciliary IPT domain containing fibrocystin/polyductin92254739623037443Rat
41204456Rpl19-ps12ribosomal protein L19, pseudogene 1292292760822932930Rat
41309300LOC120094648uncharacterized LOC12009464892308610723099478Rat
2325550Mir206microRNA 20692309424923094332Rat
2325527Mir133bmicroRNA 133b92309813423098217Rat
2888Il17ainterleukin 17A92314440223147889Rat
1584090Ppig-ps1peptidylprolyl isomerase G, pseudogene 192315970023162455Rat
41327487LOC120094868U6 spliceosomal RNA92317884423178936Rat
1311398Il17finterleukin 17F92319009423201482Rat
1305168Mcm3minichromosome maintenance complex component 392321916923237314Rat
2318314Cct7-ps4chaperonin containing TCP1 subunit 7, pseudogene 492323722223241597Rat
41151456LOC120094940small nucleolar RNA SNORA1792326215223262285Rat
1311710Paqr8progestin and adipoQ receptor family member 892331252123362175Rat
40980684LOC120094937small nucleolar RNA SNORA1792333872223338803Rat
7567345LOC102549795uncharacterized LOC10254979592334850723376276Rat
1587365Efhc1EF-hand domain containing 192337581523414283Rat
1589151Tram2translocation associated membrane protein 292341920423498745Rat
7706003LOC102549948uncharacterized LOC10254994892351713023522234Rat
7743195LOC102550123uncharacterized LOC10255012392361424323645208Rat
1562107Gsta3l1glutathione S-transferase alpha 3 like 192361969123628517Rat
1307710Tmem14atransmembrane protein 14A92364059423652379Rat
1591980Gsta3glutathione S-transferase alpha 392365857423684240Rat
7676682Mkrn1-ps1makorin ring finger protein 1, pseudogene 192367258623673857Rat
11474512LOC108351903uncharacterized LOC10835190392368406623690680Rat
41174992LOC120094861U6 spliceosomal RNA92369826123698371Rat
2753Gsta1glutathione S-transferase alpha 192370347623720121Rat
1566137Rpl10a-ps1ribosomal protein L10A, pseudogene 192372079023721499Rat
1565402Gsta6glutathione S-transferase alpha 692374326223806260Rat
41373830Erh-ps1ERH, mRNA splicing and mitosis factor, pseudogene 192375303123753355Rat
1586180Tp53-ps1tumor protein p53, pseudogene 192381058023812111Rat
1597396Khdc1KH domain containing 192381244223814932Rat
1596202Khdc1bKH domain containing 1B92382199323827647Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592383018524395984Rat
620000Rims1regulating synaptic membrane exocytosis 192469695925196404Rat
1594773Hnrnpc-ps2heterogeneous nuclear ribonucleoprotein C, pseudogene 292537089225371782Rat
1309049Ppp1r14blprotein phosphatase 1, regulatory inhibitor subunit 14B like92553116525532798Rat
41158924LOC120094650uncharacterized LOC12009465092555150625649126Rat
1586777Snrpd1-ps1small nuclear ribonucleoprotein D1 polypeptide, pseudogene 192555610225556765Rat
41057709LOC120094649uncharacterized LOC12009464992559278325615957Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10252D7Mit1213691077552010775580Ratregion
10873D9Uwm39991455455514554654Ratregion
34264D9Mgh5167958577835857951Ratregion
33583D9Mit927192315912623159388Ratregion
36063D9Rat3717191588777915887950Ratregion
36151D9Rat4615991076977510769932Ratregion
36157D9Rat3116192121837921218540Ratregion
37416D9Rat7019092526804425268236Ratregion
37468D9Rat162221933686523368873Ratregion
37472D9Rat8722891868264518682873Ratregion
35336D9Rat3928891563800415638292Ratregion
35437D9Rat3816491590616415906328Ratregion
35439D9Rat3513391722047617220609Ratregion
36984D9Rat2912992566118825661317Ratregion
37634D9Rat7921991420956414209783Ratregion
37692D9Rat8222091131173811311958Ratregion
37776D9Rat8819891112370211123900Ratregion
36510D9Rat409291401384014013932Ratregion
36707D9Rat3215891975163419751792Ratregion
34963D9Rat3415391836330118363454Ratregion
35104D9Rat16013291518425015184382Ratregion
35623D9Rat4112691353377013533896Ratregion
35695D9Rat44169951098265109995Ratregion
35733D9Rat45164942953494295513Ratregion
35871D9Rat3614791696139816961545Ratregion
39890D9Rat19322191711170917111930Ratregion
38320D9Rat6620691704407517044281Ratregion
40738D9Rat13012092375402423754144Ratregion
38684D9Rat7824391700715217007395Ratregion
38764D9Rat8110991487536514875477Ratregion
40022D9Rat15217492213332222133488Ratregion
40170D9Rat13513191176556411765695Ratregion
39400D9Rat12821192554906825549279Ratregion
41928D9Rat3327691867069618670972Ratregion
42879D9Rat18119091751034817510538Ratregion
42880D9Rat18220491718628417186488Ratregion
42884D9Rat18023592411607824116997Ratregion
42884D9Rat18023592411676224116997Ratregion
41218D9Rat13413491345703913457174Ratregion
41272D9Rat139127958596955859822Ratregion
41490D9Rat138145985680328568177Ratregion
40894D9Rat13324791463350614633755Ratregion
41556D9Rat13214891549913615499288Ratregion
43124D18Rat12223391957244019572673Ratregion
44547D9Got2615691758455117584707Ratregion
44549D9Got1511591173586111735976Ratregion
44550D9Got1226391102999111030254Ratregion
44551D9Got1440091184997111850371Ratregion
44553D9Got1615191338053513380686Ratregion
44555D9Got14024391364766013647903Ratregion
44555D9Got14024391364766013648039Ratregion
44556D9Got1818191505138115051562Ratregion
44557D9Got1717491538092615381100Ratregion
44558D9Hmgc122891647065216470878Ratregion
44559D9Got2212991666525216665381Ratregion
44560D9Got2324691756517617565422Ratregion
44561D9Got2521491784387917844093Ratregion
44562D9Got2016491730445817304622Ratregion
44563D9Got2117891766435817664536Ratregion
44564D9Got2717691875150418751680Ratregion
44565D9Got2816392191746021917623Ratregion
44566D9Got2919492236594722366141Ratregion
44567D9Wox1917692207116922071345Ratregion
44568D9Wox1617292219877322198945Ratregion
44569D9Got3024092291126422911504Ratregion
44570D9Got3123592429783724298072Ratregion
44571D9Got3215592354096823541123Ratregion
44573D9Got3315292351340323513555Ratregion
44574D9Got3519492550878925508983Ratregion
60643D9Got10172976083627608534Ratregion
60652D9Got1316491124880511248969Ratregion
60657D9Got139184917301621730346Ratregion
60658D9Got1924791709245217092701Ratregion
60659D9Got2151950127845012935Ratregion
60660D9Got2421591711998617120201Ratregion
60661D9Got3292948016044801896Ratregion
60662D9Got4137935572663557403Ratregion
60663D9Got5120934920473492167Ratregion
60667D9Got6174948015994801772Ratregion
60668D9Got7192946752864675478Ratregion
60669D9Got8286943017314302019Ratregion
60670D9Got9145959002275900374Ratregion
60825D9Wox20110987630218763131Ratregion
60826D9Wox22152979545577954713Ratregion
60827D9Wox23160979545567954720Ratregion
1303360D9Got200208911858441186050Ratregion
62475D1Uia414091743533817435380Ratregion
62508D9Uia1141992644979264638Ratregion
631290D9Wox2499910245371024636Ratregion
1334445D9Wox1819892207120022071398Ratregion
1630338D9Got20225791390887313909130Ratregion
1631969D9Wox2817791340125813401435Ratregion
1628057D9Wox3417892469906124699239Ratregion
1629214D9Wox3624091752125117521491Ratregion
1629708D9Wox4316291497004214970204Ratregion
1638936D9Wox3814092045455120454691Ratregion
1641215D9Cebr3178934786283478806Ratregion
1639864D9Wox411289951427951555Ratregion
1635603D9Got21526491678928116789545Ratregion
1636087D9Wox4415091340079313400943Ratregion
1636259D9Cebr123791087323910873477Ratregion
1636389D9Got22218192361018223610363Ratregion
1637006D9Got245229982103738210602Ratregion
1638026D9Wox4219091496905414969244Ratregion
1632443D9Got1273921580852158360Ratregion
1634267D9Got231267987777998778067Ratregion
1634453D9Got21319991680848016808679Ratregion
7206718D17Mit3521691546358315463799Ratregion
7205916D2S21540969439706944119Ratregion
5036191D17Wsu104e231910015471001778Ratregion
5038924RH12741130991473936414739673Ratregion
7206552UniSTS:547044781918834531884234Ratregion
7206560UniSTS:547057266918737081873974Ratregion
5036410UniSTS:14385023191430034914300580Ratregion
5039092RH12750821091443541814435628Ratregion
5039152RH12754219691543871715438913Ratregion
5036631AU04865320392166439821664601Ratregion
5037011AU04991518791372180413721991Ratregion
5037183RH911021419827981828122Ratregion
5035713Runx230991616772616168035Ratregion
5031352PMC150810P110391637176516371868Ratregion
5028593AI4152818791472531814725405Ratregion
5028595AU015179126919036601903786Ratregion
5028637RH125689201987138678714067Ratregion
5028643RH125746250917311371731387Ratregion
5028645RH12575525491560311115603365Ratregion
7205848GAK__6772498940872574087688Ratregion
5031416AU04839313092166027021660400Ratregion
5031526AU048038185954782085478393Ratregion
5026284RH13162121792371141323711630Ratregion
5031956AU046569252955622245562477Ratregion
5026628RH13293519891258627212586470Ratregion
5026652RH13302518092254406822544248Ratregion
5026696RH13318516591420455214204717Ratregion
5026726RH13330119591330576713305962Ratregion
5026742RH13336219391424755314247747Ratregion
5029383RH144584188921189532119141Ratregion
5032167RH126039217918440381844255Ratregion
5026958RH13418520491406528114065485Ratregion
5035402BE11465118691908135619081542Ratregion
5035490BQ19602621092020793720208147Ratregion
5034992Nrtn101915821001582201Ratregion
5029919BE10318319791188325611883453Ratregion
5030057AW53151121791107622111076438Ratregion
5032853RH13673018991546159115461780Ratregion
5035182AW52658117291844626018446432Ratregion
5035204BE09855015991350193413502093Ratregion
5027521AW04802314391453655514536698Ratregion
5027523AI4134818791467721514677302Ratregion
5030167BF4011669491702919017029284Ratregion
5030189AI14567918791481276714812955Ratregion
5027671Dscr1l123091696177316962003Ratregion
5027723SGC32809133919186421918775Ratregion
5027763RH9464616891406617114066339Ratregion
5033153RH13779517791202572712025900Ratregion
5025204RH12741638391330514913305532Ratregion
5025206RH12742421191587871515878926Ratregion
5027819RH9486719091261161312611803Ratregion
5033217RH13801423592407546124075696Ratregion
5028195D17Mit88146921154952115641Ratregion
5033551RH13923912191261363012613751Ratregion
5033593RH139393238912368741237112Ratregion
5031029BE12123316791310130613101473Ratregion
5033751RH13998719091252832412528514Ratregion
5025782RH129643189918405831840772Ratregion
5025868RH130001197918374741837671Ratregion
5031171BE11684615491636444316364597Ratregion
5055955RH144099208918688391869047Ratregion
5051587AW0499428991443523914435328Ratregion
5051725RH94621149922087682208917Ratregion
5053913RH14292324391096244910962692Ratregion
5054397RH14320114191406055214060693Ratregion
5057416AI01043512691818241918182545Ratregion
5052147RH9486619091261160312611793Ratregion
5055353RH143752104911590571159161Ratregion
5054461RH143237249987133198713568Ratregion
5059382AW53053715891358281213582970Ratregion
5057854BF38626217992495736724957546Ratregion
5057868BE10160420892519117325191381Ratregion
5054743RH143400760914553461456106Ratregion
5057882BF39288114391242318312423326Ratregion
5057932BF38634115091473656414736714Ratregion
5055161RH14364113091266532212665452Ratregion
5056449RH14438521491337256013372774Ratregion
5055249RH143692133958327485832881Ratregion
5052551U05252157946812684681425Ratregion
5058984BE10266915091264666412646814Ratregion
5059840BF38800815591416806114168216Ratregion
5055679RH143940223915545501554773Ratregion
5055783RH14400032791429541714295744Ratregion
5055783RH14400032791429541714295744Ratregion
5060010BF40026321792510442625104643Ratregion
5049934RH13376618091467733814677518Ratregion
5058520BI2906699491776795117768045Ratregion
5059054BE10276017391385384413854017Ratregion
5059196BF38762715291845461618454768Ratregion
5053597RH14274113991352289313523032Ratregion
5052555AU0409091459901143901288Ratregion
5050204RH13392187691356464013565517Ratregion
5051176RH134483197911112851111482Ratregion
5051248RH1345244649901259901723Ratregion
5050802RH1342661849809550809734Ratregion
5044034RH13037218092334861823348798Ratregion
5040812RH12849747591433411014334585Ratregion
5040900RH12854820191830290218303103Ratregion
5044466RH13061918091108912311089303Ratregion
5044588RH13069019591409896214099157Ratregion
5044610RH13070319591311505713115252Ratregion
5041036RH12862620291257812812578330Ratregion
5043762RH130212189919888281989019Ratregion
5044988RH130918180918886551889908Ratregion
5045018RH13093647991788009117880573Ratregion
5045636RH131291196931443923144593Ratregion
5041724RH129022183968755546875737Ratregion
5041724RH129022183968755546875737Ratregion
5044612RH130704302920875292087831Ratregion
5046328RH131689551919031241903675Ratregion
5045328RH131115215934763233476538Ratregion
5047532RH13238120991261158012611789Ratregion
5045998RH131500190921208542121044Ratregion
5046012RH131508214934790803479294Ratregion
5048858RH13314621091695953316959743Ratregion
5045680RH13131718191560305215603233Ratregion
5047826RH13255019391431111014311303Ratregion
5046654RH13187820191544287715443078Ratregion
5046796RH13195918192438759024387771Ratregion
5049384RH133450189972216527221841Ratregion
5049430RH133476180987148138714993Ratregion
5046956RH132051205913959381396143Ratregion
5048190RH132760183965295126529695Ratregion
5047390RH13230019491437123714371431Ratregion
5042368RH12939418291543860415438786Ratregion
5048574RH1329821959929247929442Ratregion
5040042RH12805621491403217014032384Ratregion
5042910RH12971721591430010014300315Ratregion
5039450RH12771320992336180623362015Ratregion
5039458RH12771718591406201514062200Ratregion
5039594RH12779520291435070214350904Ratregion
5039636RH12781921591485335414853569Ratregion
5042054RH12921220892006983520070043Ratregion
5042154RH129271150965148486514998Ratregion
5042204RH12929921091330538513305595Ratregion
5043066RH129812187910015861001773Ratregion
5039670RH12783921191430031914300530Ratregion
5040150RH128118217935125303512747Ratregion
5040254RH12817820791530301715303224Ratregion
5042570RH1295142039808030808233Ratregion
5043778RH13022219091154669911546889Ratregion
5040454RH12829220691257702912577235Ratregion
5072624RH136957217929076812907895Ratregion
5072776RH13704620891541389315414101Ratregion
5071972RH13539121791359831013598527Ratregion
5075446RH13859813091359442813594558Ratregion
5075654RH13871914491459815614598300Ratregion
5075722RH138759230911361261136356Ratregion
5072278RH13675621791406617014066387Ratregion
5076364RH13913212491293788712938011Ratregion
5072558RH136918180915442101544390Ratregion
5072558RH136918180915442101544390Ratregion
5072586RH13693418291750967617509858Ratregion
5072684RH13699221791534045515340672Ratregion
5072718RH1370131509846570846720Ratregion
5074636RH13813124492363225723632501Ratregion
5076626RH13928513291359967613599808Ratregion
5075388RH13856519491470794914708143Ratregion
5075018RH13835112092498637024986490Ratregion
5080612RH1416805769902833903409Ratregion
5080644RH14169918591474031714740502Ratregion
5077750RH139937189923976872397876Ratregion
5075838RH13882621691406055214060768Ratregion
5079538RH14105618191430850614308687Ratregion
5079608RH14109918092383357023833750Ratregion
5077456RH139767199946803274680526Ratregion
5077656RH139882217936737963674013Ratregion
5078316RH14027020691339222613392432Ratregion
5079836RH141231219922091872209406Ratregion
5079838RH14123221991744092417441143Ratregion
5078260RH14023618491413475714134941Ratregion
5080084RH14137418092321925323219433Ratregion
5078580RH14042621891452513714525355Ratregion
5079102RH1407361459940003940148Ratregion
5079144RH14076114291363227913632421Ratregion
5072912RH137126203919178381918041Ratregion
5072940RH13714218091154753711547717Ratregion
5079200RH140794198915553931555591Ratregion
5080266RH1414812019900438900639Ratregion
5080270RH141483200912354861235686Ratregion
5071406RH13506319792341930323419500Ratregion
5071426RH1350751919951032951223Ratregion
5073602RH13753112391431920814319331Ratregion
5073630RH13754716191348817313488334Ratregion
5073660RH13756515292365209023652242Ratregion
5070828RH1347292019802971803172Ratregion
5074174RH13786419591363426113634456Ratregion
5071184RH13493618591263561112635796Ratregion
5071192RH1349402209799190799410Ratregion
5073414RH13742218791100293511003122Ratregion
5071960RH13538418191351868113518862Ratregion
5074234RH13789922992337484223375071Ratregion
5071560RH13515318791546392615464113Ratregion
5072170RH13669312391258828612588409Ratregion
5071622RH135189187912363181236505Ratregion
5071732RH13525318191443762614437807Ratregion
5071774RH13527620091422880314229003Ratregion
5063376BI30178721091236329412363504Ratregion
5065056BF40559512591493523814935363Ratregion
5066842AU048118196929118272912073Ratregion
5067106AU04796120092354095723541157Ratregion
5067232AU04788118391411483814115021Ratregion
5067308AU04783413691548934215489478Ratregion
5067488AU04771410692141073121410837Ratregion
5067640AU04762312091092899210929112Ratregion
5067764AU04755024591514459115144831Ratregion
5068108AU04734315792532724425327401Ratregion
5068402AU04716818791883681418837001Ratregion
5068548AU04708019491304802313048217Ratregion
5068616AU047037210982408818240924Ratregion
5069402AU0465239691675698616757082Ratregion
5069780AU02875825692542014025420398Ratregion
5069796AU02800516692286245322862619Ratregion
5070404AI84681614291530326115303403Ratregion
5069246AU04662328991122706611227350Ratregion
5063502BF39896711591716404117164156Ratregion
5065308AI53519210492342457023424674Ratregion
5060360AW525135168912069781207146Ratregion
5062256BE10640415192048170020481851Ratregion
5063810AW53527718091792447317924653Ratregion
5063946AW53581315491456886214569016Ratregion
5062684BF40384345391181977811820231Ratregion
5060096BF38848716791365030613650473Ratregion
5060126BF38852617891415288214153060Ratregion
5062148BE10626318091337305613373236Ratregion
5063602BE10782015991339057113390730Ratregion
5060528BE11029315491735917517359329Ratregion
5062272BE10646115092391450723914657Ratregion
5061002BF4016319492514322025143314Ratregion
5062564BF40342017891687734916877527Ratregion
5061128AW52616516091420489514205055Ratregion
5062870BE11313016091447060614470766Ratregion
5062970BE11351216992519182725191996Ratregion
5064758BF4050239292498314524983237Ratregion
5061484BE11187215591376587613766031Ratregion
5066502AU04831822492479531924795543Ratregion
5061512BE10537315591596980615969961Ratregion
5087054AI40639319092517378425173974Ratregion
5087368BQ20949021391656971516569928Ratregion
5086598AA89179620991330538113305590Ratregion
5087582PMC344171P190892342610323427011Ratregion
5082751BF39002024591347642313476668Ratregion
5089123AU048967144965329966533142Ratregion
5089153AU048986107933190933319126Ratregion
5089817AU049381278920872442087522Ratregion
5083205BF39098920691401951614019722Ratregion
5083255BI27583775991325808013258839Ratregion
5088247AU04845419091288859512888787Ratregion
5089297AU04907220791092887610929083Ratregion
5083535BI27609117591682687616827051Ratregion
5083637BI276528188918305331830721Ratregion
5083753AA80069816092383052523830685Ratregion
5088761AU04876117091838425418384424Ratregion
5088869AU04881814691542941415429560Ratregion
5089659AU04928625591131173811311993Ratregion
5084434AI23519411792341991023420027Ratregion
5090109AU04955520892423915524239185Ratregion
5090237AU04963114692397017523970321Ratregion
5090237AU04963114692397017523970479Ratregion
5085014AI01010714992038721720387366Ratregion
5087805D5Wsu145e276987149268715204Ratregion
5085451BM39039516091169231311692473Ratregion
5085483AI17714720691413032114130527Ratregion
5088569AU048648122915900301590152Ratregion
5080942RH14187220291457189814572100Ratregion
5090429AU049745282982536598253941Ratregion
5088909AU048842138921517322151868Ratregion
5081306RH14208419691472627914726475Ratregion
5085663BI27677916391367391213674075Ratregion
5089245AU04904121892262640922626629Ratregion
5086016BM38383015091431594814316098Ratregion
5080982RH14189518292342244223422624Ratregion
5081006RH14190915891352484713525005Ratregion
5082955BF39048521492510432725104541Ratregion
5082963BI28143911192047193220472043Ratregion
5083511BE10032921191361489613615107Ratregion
5085788BM38501716191695265816952819Ratregion
5503260UniSTS:2376588391418475414184837Ratregion
5503224UniSTS:237297319926996642699979Ratregion
5503224UniSTS:237297319927610262761341Ratregion
5503224UniSTS:237297319929536022953917Ratregion
5503268UniSTS:237667257913973831397640Ratregion
5503272UniSTS:237662129933977043397833Ratregion
5503470SRF_346773091443353014434260Ratregion
5507819REN5932125391291399012914243Ratregion
5504111px-6g713791930989719310034Ratregion
5504570PMC305791P167191442718914427903Ratregion
5504570PMC305791P167191442723214427903Ratregion
5505506D4S33301671990139299015512Ratregion
5504438PMC20712P193491495436714955301Ratregion
5505124Khsrp941918634751864416Ratregion
5506491D11S41431536976654537666991Ratregion
5506698REN3602081491148830111489115Ratregion
5507005fj02h10.x1332949715104971842Ratregion
5501936MARC_17747-17748:1031760580:1502921222882122790Ratregion
5500424REN6052925091320278613203036Ratregion
5499697Dazl110691070094810702054Ratregion
5502303RH12435427391339416613394439Ratregion
5500605RH136188207965116546511861Ratregion
5500414REN5958323691297041612970652Ratregion
5500416REN5959524091297311212973352Ratregion
5500418REN5982725291303250213032754Ratregion
5500420REN5999425491307481213075066Ratregion
5500422REN6051524791319949513199742Ratregion
5500450AW184596286975018637502149Ratregion
5500649RH136456190965116546511844Ratregion
5503436stSG63486098491310355213104536Ratregion
5500897D4S157952291096758210968104Ratregion
5505227Safb1304914302831431587Ratregion
5501742MARC_10377-10378:999102157:1147591477488414776359Ratregion
5506575VEGF_112782491496919014970014Ratregion
5506583AW46451710392555624825556351Ratregion
5501870MARC_16413-16414:1018631384:10914086921409275Ratregion
5501870MARC_16413-16414:1018631384:10914311961431698Ratregion
5501886MARC_16785-16786:1033500245:365091433079814331448Ratregion
5502022MARC_24021-24022:1029778648:1606919185431919149Ratregion
5502086MARC_3939-3940:996679197:361192323455523235166Ratregion
5502106MARC_4447-4448:966894303:1182910019131003230Ratregion
5502447RH1248918791431930814319395Ratregion
5502975Tcfap2b47992181144221811921Ratregion
5502353RH12456518192555636125556542Ratregion
5502371RH124646187917312491731436Ratregion
Position Markers

Flank 1: (D9Rat29)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2925,661,188 - 25,661,317 (+)MAPPER
Rnor_6.0929,466,970 - 29,467,098NCBI
Rnor_5.0928,304,251 - 28,304,379UniSTS
RGSC_v3.4922,066,101 - 22,066,432RGD
RGSC_v3.4922,066,241 - 22,066,369UniSTS
RGSC_v3.1922,067,655 - 22,067,783RGD
Celera923,209,951 - 23,210,079UniSTS
RH 3.4 Map9243.5UniSTS
RH 3.4 Map9243.5RGD
RH 2.0 Map9232.4RGD
SHRSP x BN Map924.2298RGD
FHH x ACI Map918.97RGD
Peak: (D9Mgh5)
Rat AssemblyChrPosition (strand)Source
GRCr896,094,409 - 6,094,576 (+)Marker Load Pipeline
mRatBN7.295,857,783 - 5,857,951 (-)MAPPER
Rnor_6.093,309,754 - 3,309,921NCBI
Rnor_5.0937,250,734 - 37,250,901UniSTS
RGSC_v3.492,176,482 - 2,176,650RGD
RGSC_v3.492,176,483 - 2,176,650UniSTS
RGSC_v3.192,176,482 - 2,176,650RGD
Celera92,719,700 - 2,719,867UniSTS
Cytogenetic Map9q11UniSTS
Flank 2: (D9Mit6)
Rat AssemblyChrPosition (strand)Source
GRCr896,714,692 - 6,714,888 (+)Marker Load Pipeline
RGSC_v3.491,526,763 - 1,526,958UniSTS
RGSC_v3.191,526,762 - 1,526,958RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Eae4


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Eae4  Experimental allergic encephalomyelitis QTL 4    Experimental Autoimmune (allergic) Encephalomyelitis (immunization with spinal cord + adjuvant) QTL 4  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general generation of DA.BN-(D9Wox24-D9Rat20)/Kini and LEW.BN-(D9Wox24-D9Got22)/Kini confined this region between D9Wox24 to D9Got8 (~1 cM) 7241236