Gcr1 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL Registration

QTL: Gcr1 (Gastric cancer resistance QTL 1) Rattus norvegicus

Symbol: Gcr1
Name: Gastric cancer resistance QTL 1
RGD ID: 70201
Trait: stomach morphology trait   (VT:0000470)    
Measurement Type: stomach tumor susceptibility score   (CMO:0002043)    
LOD Score: 2.7
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04119,705,414 - 146,087,100RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04184,956,749 - 209,380,347RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44121,990,539 - 150,048,167RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.14144,844,971 - 150,292,996RGD
Cross Type: Not Available
Strains Crossed: ACI/N BUF/N 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
necropsy  (IDA)

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
BUF/N  (IEA)

References

References - curated
1. QTL data import from the RatMap database
2. Ushijima T, etal., Cancer Res 2000 Feb 15;60(4):1092-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3594Rpn1ribophorin I4119997232120018687Rat
3960Vhlvon Hippel-Lindau tumor suppressor4145580869145587835Rat
71067Gpr27G protein-coupled receptor 274132137793132138926Rat
3253Cntn3contactin 34134783671135159309Rat
3903Trhthyrotropin releasing hormone4124110716124113242Rat
70918Klf15Kruppel-like factor 154122364688122377690Rat
70938Il5rainterleukin 5 receptor subunit alpha4138796165138834164Rat
69339Nup210nucleoporin 2104122643952122741322Rat
3092Mitfmelanocyte inducing transcription factor4130172484130425496Rat
2664Gata2GATA binding protein 24120129028120142490Rat
69079Wnt7aWnt family member 7A4122994425123040609Rat
2933Itpr1inositol 1,4,5-trisphosphate receptor, type 14140247297140580749Rat
2281Cav3caveolin 34144382945144398919Rat
68439Bhlhe40basic helix-loop-helix family, member e404140703619140709319Rat
2176Atp2b2ATPase plasma membrane Ca2+ transporting 24145704779145948997Rat
3239Oxtroxytocin receptor4144399326144417598Rat
620280Prok2prokineticin 24132157556132171244Rat
629473Camk1calcium/calmodulin-dependent protein kinase I4145289300145300146Rat
632283Ghrlghrelin and obestatin prepropeptide4145674157145678066Rat
71039Mgllmonoglyceride lipase4120671436120773458Rat
621168Ogg18-oxoguanine DNA glycosylase4145282828145289367Rat
621294Aldh1l1aldehyde dehydrogenase 1 family, member L14123516553123564067Rat
621668Grip2glutamate receptor interacting protein 24123585184123636040Rat
708509Vom1r90vomeronasal 1 receptor 904121675261121684264Rat
628685Fbln2fibulin 24122835237122895127Rat
68321Sec61a1SEC61 translocon subunit alpha 14120453577120467932Rat
620172Frmd4bFERM domain containing 4B4129658137129984735Rat
620551Tmf1TATA element modulatory factor 14129521986129546024Rat
708572Arl6ip5ADP-ribosylation factor like GTPase 6 interacting protein 54129574363129598240Rat
621361Cntn4contactin 44137785166138787527Rat
68373Ruvbl1RuvB-like AAA ATPase 14120411917120447458Rat
621084Uba3ubiquitin-like modifier activating enzyme 34129548411129569550Rat
619857Grm7glutamate metabotropic receptor 74142452616143368460Rat
708391Vom1r97vomeronasal 1 receptor 974121898248121900419Rat
1304561Chchd6coiled-coil-helix-coiled-coil-helix domain containing 64121340952121565222Rat
61912Slc6a6solute carrier family 6 member 64123638619123713469Rat
620858Tpra1transmembrane protein adipocyte associated 14120843374120854534Rat
3201Nr2c2nuclear receptor subfamily 2, group C, member 24124005287124030349Rat
62008Cntn6contactin 64136512201136904355Rat
61908Rab7aRAB7A, member RAS oncogene family4119910461119963065Rat
621807CnbpCCHC-type zinc finger, nucleic acid binding protein4119747890119756787Rat
1304842Mtmr14myotubularin related protein 144145195046145238097Rat
1305008Suclg2succinate-CoA ligase GDP-forming subunit beta4127552100127824970Rat
1306723Prickle2prickle planar cell polarity protein 24124238167124584176Rat
1305577Mcm2minichromosome maintenance complex component 24120825699120840221Rat
1305589Fgd5FYVE, RhoGEF and PH domain containing 54123865557123962904Rat
708382Vom1r105vomeronasal 1 receptor 1054122124451122131893Rat
1306392Il17rcinterleukin 17 receptor C4145426647145439845Rat
1305815Podxl2podocalyxin-like 24120785494120817335Rat
1307077RybpRING1 and YY1 binding protein4132689623132740823Rat
1305760XpcXPC complex subunit, DNA damage recognition and repair factor4123134457123161985Rat
1307312Ppp4r2protein phosphatase 4, regulatory subunit 24133285552133323755Rat
1306993Rad18RAD18 E3 ubiquitin protein ligase4144537329144620606Rat
1307582Rpusd3RNA pseudouridine synthase D34145361937145370992Rat
1309939Sumf1sulfatase modifying factor 14140139017140220482Rat
1308857Trnt1tRNA nucleotidyl transferase 14138855497138869217Rat
1307688Isy1ISY1 splicing factor homolog4119721659119742349Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133131711133133170Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133037515133127183Rat
1308770Mrps25mitochondrial ribosomal protein S254124036654124048417Rat
1305250Pdzrn3PDZ domain containing RING finger 34133717139133951282Rat
1311706Hdac11histone deacetylase 114122781095122798355Rat
1560552Eefseceukaryotic elongation factor, selenocysteine-tRNA-specific4120194335120390203Rat
1305225Ccdc174coiled-coil domain containing 1744123760708123787529Rat
1359401Vom1r95vomeronasal 1 receptor 954121821837121822781Rat
1309584Irak2interleukin-1 receptor-associated kinase 24145594575145651066Rat
1303172Fancd2FA complementation group D24145489869145551479Rat
1306889Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 94124660254124860997Rat
1310433Setd5SET domain containing 54145017549145095247Rat
1311566Emc3ER membrane protein complex subunit 34145471466145487375Rat
1310746Chchd4coiled-coil-helix-coiled-coil-helix domain containing 44123108924123118186Rat
1359357EogtEGF domain specific O-linked N-acetylglucosamine transferase4129477779129515435Rat
1359363Abtb1ankyrin repeat and BTB domain containing 14120778580120784807Rat
1308363Txnrd3thioredoxin reductase 34121612332121650543Rat
1308669Foxp1forkhead box P14131362178131963466Rat
1549781Vom1r96vomeronasal 1 receptor 964121870699121871658Rat
1309212Cpne9copine family member 94145238011145262444Rat
1310096Arpc4actin related protein 2/3 complex, subunit 44145330457145340985Rat
1305971Lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated4123162086123168330Rat
1306788Lrig1leucine-rich repeats and immunoglobulin-like domains 14126615998126717434Rat
1305768Cfap100cilia and flagella associated protein 1004122314462122338862Rat
1310533Crbncereblon4138864910138885786Rat
1309412Creld1cysteine-rich with EGF-like domains 14145440284145449894Rat
1308963Lmcd1LIM and cysteine-rich domains 14144192989144252554Rat
1308811Slc25a26solute carrier family 25 member 264126522335126615402Rat
1305397Rbsnrabenosyn, RAB effector4124050559124080919Rat
1562113Cideccell death-inducing DFFA-like effector c4145377482145390497Rat
1563166Kbtbd8kelch repeat and BTB domain containing 84127164728127177537Rat
1560871Plxna1plexin A14121217658121262697Rat
1563152Srgap3SLIT-ROBO Rho GTPase activating protein 34144638782144869961Rat
1560289RGD1560289similar to chromosome 3 open reading frame 204123790516123839149Rat
1563492RGD1563492similar to ATP-binding cassette, sub-family F (GCN20), member 24136226867136229249Rat
1562010Ssuh2ssu-2 homolog4144301913144322197Rat
1561981Dnajb8DnaJ heat shock protein family (Hsp40) member B84120156640120159708Rat
1562716Tcp1-ps1t-complex protein 1, pseudogene 14120180605120182231Rat
1564009Tada3transcriptional adaptor 34145318417145330291Rat
1564145Lrrn1leucine rich repeat neuronal 14139633310139679730Rat
1561296ZxdcZXD family zinc finger C4122282119122314251Rat
1560852Thumpd3THUMP domain containing 34144985850145010164Rat
1561565Ier3ip1immediate early response 3 interacting protein 14132140802132152059Rat
735148Il17reinterleukin 17 receptor E4145413157145426608Rat
1562419Prrt3proline-rich transmembrane protein 34145449574145458900Rat
1359098Vom1r94vomeronasal 1 receptor 944121810559121811539Rat
1560513RGD1560513similar to macrophage migration inhibitory factor4132295929132298552Rat
1562825Chst13carbohydrate sulfotransferase 134122223846122244848Rat
1562830Arl8bADP-ribosylation factor like GTPase 8B4140837745140881866Rat
1564292RGD1564292similar to Nucleolar protein 14127966113127968435Rat
1549694Vom1r98vomeronasal 1 receptor 984121912352121913296Rat
1549711Tmem43transmembrane protein 434123118468123133610Rat
1311255Ttll3tubulin tyrosine ligase like 34145341059145366614Rat
1549740Vom1r93vomeronasal 1 receptor 934121771681121779354Rat
1559800Hmces5-hydroxymethylcytosine binding, ES cell specific4119841088119864115Rat
1549727Vom1r100vomeronasal 1 receptor 1004122005560122009301Rat
1563030Tafa1TAFA chemokine like family member 14128818468128942088Rat
1560353RGD1560353similar to 60S ribosomal protein L134136124902136127166Rat
727967Lhfpl4LHFPL tetraspan subfamily member 44145117533145147397Rat
1583000LOC688907similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)4127328444127334012Rat
1584828Brpf1bromodomain and PHD finger containing, 14145264445145280943Rat
1586603LOC686093similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34)4133523773133541592Rat
1585994LOC502870similar to B0361.84139024096139165637Rat
1585995LOC502869similar to karyopherin (importin) alpha 24135948298135950166Rat
1585996LOC502864similar to proteasome beta 3 subunit4127025024127028562Rat
1585997LOC502863similar to transcription elongation factor B (SIII), polypeptide 24126305326126305689Rat
1585998LOC502860hypothetical LOC5028604121658524121659443Rat
1585999Kbtbd12kelch repeat and BTB domain containing 124120492541120567755Rat
1586441LOC688659similar to acidic ribosomal phosphoprotein P04125658901125660013Rat
1586482Gxylt2glucoside xylosyltransferase 24133179185133263493Rat
1583218LOC685085similar to 40S ribosomal protein S254120040765120041256Rat
1564924Lmod3leiomodin 34129604378129619136Rat
1565292Copg1COPI coat complex subunit gamma 14119815041119840997Rat
1565997Fancd2osFANCD2 opposite strand4145549248145556054Rat
1564573Vom1r92vomeronasal 1 receptor 924121758942121761699Rat
1565488Jagn1jagunal homolog 14145399885145404605Rat
1565882SetmarSET domain and mariner transposase fusion gene4140092346140104495Rat
1565596H1f10H1.10 linker histone4119889016119892661Rat
1563633Edem1ER degradation enhancing alpha-mannosidase like protein 14140886644140918654Rat
1359555Sec13SEC13 homolog, nuclear pore and COPII coat complex component4145686186145699577Rat
1565300Rab43RAB43, member RAS oncogene family4119695012119714490Rat
1591392Prr20eproline rich 20E4121040810121053910Rat
1589573Slc41a3solute carrier family 41, member 34123467552123513447Rat
1586185Eif4e3eukaryotic translation initiation factor 4E family member 34132068581132111092Rat
1592322LOC689440similar to 60S ribosomal protein L134134507143134512545Rat
1587777Uroc1urocanate hydratase 14122244744122276357Rat
1587811LOC685964hypothetical protein LOC6859644122217505122221999Rat
1586017Tatdn2TatD DNase domain containing 24145653299145669343Rat
1586018LOC500283similar to Proteasome 26S subunit subunit 4 ATPase CG5289-PA4141168128141169458Rat
1586019LOC500279similar to Phosphoglycerate kinase 14138432885138434587Rat
1586020LOC500277similar to Ras-GTPase-activating protein binding protein 1 (ATP-dependent DNA helicase VIII) (GAP SH3-domain binding protein 1) (G3BP-1) (HDH-VIII)4136078376136079997Rat
1587829Vom1r104vomeronasal 1 receptor 1044122169765122170730Rat
1589884LOC689694similar to 40S ribosomal protein S7 (S8)4139537980139538525Rat
1589006Vom1r99vomeronasal 1 receptor 994121968622121969446Rat
1586021LOC500273similar to tubulin, alpha 8 like 34134290913134291859Rat
1586024LOC500263similar to heterogeneous nuclear ribonucleoprotein A34127193389127194243Rat
1586025Magi1membrane associated guanylate kinase, WW and PDZ domain containing 14125684816126300013Rat
1597443Tafa4TAFA chemokine like family member 44129196658129430438Rat
1592353LOC689407similar to smoothelin isoform a4133688739133690763Rat
1593481LOC689383similar to cytoplasmic beta-actin4133137034133139247Rat
1592633LOC685514similar to ribosomal protein L364120403170120403551Rat
1590235LOC685733similar to vomeronasal V1r-type receptor V1rb64121703480121704364Rat
1598136Brk1BRICK1 subunit of SCAR/WAVE actin nucleating complex4145559206145574438Rat
1596313Iqsec1IQ motif and Sec7 domain ArfGEF 14123400717123454656Rat
2316381Vom1r-ps87vomeronasal 1 receptor pseudogene 874123062299123062925Rat
2316382Vom1r-ps86vomeronasal 1 receptor pseudogene 864122185642122186571Rat
2316383Vom1r-ps85vomeronasal 1 receptor pseudogene 854122085455122086053Rat
2316384Vom1r-ps84vomeronasal 1 receptor pseudogene 844122072934122073845Rat
2316385Vom1r-ps83vomeronasal 1 receptor pseudogene 834122067831122068733Rat
2316386Vom1r-ps82vomeronasal 1 receptor pseudogene 824122055101122056097Rat
2316387Vom1r-ps81vomeronasal 1 receptor pseudogene 814122045600122046503Rat
2316388Vom1r-ps80vomeronasal 1 receptor pseudogene 804121932963121933127Rat
2316389Vom1r-ps79vomeronasal 1 receptor pseudogene 794121931315121932132Rat
2316390Vom1r-ps78vomeronasal 1 receptor pseudogene 784121906592121907419Rat
2316391Vom1r-ps77vomeronasal 1 receptor pseudogene 774121848074121848968Rat
2316408Vom1r103vomeronasal 1 receptor 1034122124451122131712Rat
2319160LOC100361920dynein light chain 1-like4126070800126074935Rat
2319333LOC100361844mCG51413-like4145395849145398300Rat
2319475LOC100361799cDNA sequence BC006662-like4145312923145313543Rat
2318954LOC100362026cytochrome c oxidase, subunit VIc-like4126905378126905672Rat
2319531LOC100361743chaperonin containing Tcp1, subunit 3 (gamma)4145307845145310648Rat
2320195LOC100364870hypothetical LOC1003648704126369560126410240Rat
2323419LOC100363221hypothetical LOC1003632214121677926121679555Rat
2323009Mdfic2MyoD family inhibitor domain containing 24130649564130751397Rat
2323735LOC100362958hypothetical LOC1003629584119764433119765427Rat
2323903LOC100362876hypothetical LOC1003628764126515242126520847Rat
6493463LOC10091133740S ribosomal protein S25-like4120407800120408290Rat
6493053LOC10091137140S ribosomal protein S25-like4120413647120414138Rat
6487745LOC100912325actin, cytoplasmic 2-like4139990873139991923Rat
6491660Thumpd3-as1THUMPD3 antisense RNA 14145010882145017388Rat
7499834LOC102548450uncharacterized LOC1025484504145373527145376624Rat
7507912LOC102555186uncharacterized LOC1025551864132290011132294070Rat
7508836LOC102549269uncharacterized LOC1025492694128152877128221659Rat
7512196LOC102547820uncharacterized LOC1025478204121701430121706862Rat
7514013LOC102556061uncharacterized LOC1025560614125191567125247001Rat
7537443LOC102556496uncharacterized LOC1025564964125688257125697591Rat
7539827LOC102548902uncharacterized LOC1025489024123703946123738341Rat
7650153LOC102552138uncharacterized LOC1025521384119895653119910825Rat
7623898LOC102548337uncharacterized LOC1025483374144953748144985765Rat
7609120LOC102548080uncharacterized LOC1025480804144620731144687704Rat
7609272LOC102554878uncharacterized LOC1025548784120750833120752329Rat
7643253LOC102550115ribosome biogenesis regulatory protein homolog4128659271128662434Rat
7643619LOC102555246uncharacterized LOC1025552464133008974133013814Rat
7661237LOC102554570uncharacterized LOC1025545704124700015124752686Rat
7590189LOC102555978uncharacterized LOC1025559784125044157125133795Rat
7591615LOC102555035uncharacterized LOC1025550354120944213120958941Rat
7545388LOC102556397gamma-aminobutyric acid receptor-associated protein-like4126015048126016219Rat
7601859LOC102555860uncharacterized LOC1025558604125147311125164319Rat
7562079LOC102554068uncharacterized LOC1025540684120064813120074394Rat
7550029LOC102555094uncharacterized LOC1025550944120993623120996241Rat
7565639LOC102549329uncharacterized LOC1025493294135876685135891505Rat
7553480LOC102554857uncharacterized LOC1025548574123858182123864108Rat
7692497LOC102547402uncharacterized LOC1025474024140620451140656139Rat
7707413LOC10254641260S ribosomal protein L23a-like4126520330126520871Rat
7731047LOC102555697uncharacterized LOC1025556974133406466133469099Rat
7696532LOC102554942uncharacterized LOC1025549424120881995120934151Rat
7669867LOC102555037uncharacterized LOC1025550374131990634131993482Rat
7698712LOC102547280uncharacterized LOC1025472804135465906135470160Rat
7723051LOC102547466uncharacterized LOC1025474664140564422140594171Rat
9087191LOC103692185uncharacterized LOC1036921854121630814121632736Rat
9129755LOC103692186uncharacterized LOC1036921864122717433122718470Rat
9139503LOC10369219660S ribosomal protein L23a pseudogene4129896833129898054Rat
9140318LOC103690748uncharacterized LOC1036907484123285245123286792Rat
9101484LOC103692192uncharacterized LOC1036921924126632734126635384Rat
9070006LOC103692189uncharacterized LOC1036921894125604132125608677Rat
9152984LOC103692204uncharacterized LOC1036922044145798664145803494Rat
9199378LOC103692202cyclin-dependent kinases regulatory subunit 2 pseudogene4142969739142970846Rat
9124640LOC10369217960S ribosomal protein L34 pseudogene4119810755119811105Rat
9205690LOC103692203uncharacterized LOC1036922034144070869144117408Rat
9075742LOC103692191uncharacterized LOC1036921914126220395126226449Rat
9215796LOC103692193uncharacterized LOC1036921934127796666127800972Rat
9307839LOC103692197uncharacterized LOC1036921974132430947132439747Rat
9272263LOC103692200uncharacterized LOC1036922004133406466133413628Rat
9229745LOC103692198uncharacterized LOC1036921984132330276132374231Rat
9285430LOC103692190uncharacterized LOC1036921904125644800125657336Rat
9377556LOC103692188uncharacterized LOC1036921884124537165124539501Rat
9252280LOC103692180uncharacterized LOC1036921804120054538120060839Rat
9255243LOC103692201UPF0729 protein C18orf32 homolog4133680844133681086Rat
9340208LOC103692195uncharacterized LOC1036921954129318247129319649Rat
9301889LOC103692187uncharacterized LOC1036921874124080874124090409Rat
9261195LOC103692199uncharacterized LOC1036921994132530834132579765Rat
9414372LOC103692194uncharacterized LOC1036921944127561439127562904Rat
11385382LOC10835087360S ribosomal protein L17 pseudogene4133680324133680845Rat
11455689LOC108350871uncharacterized LOC1083508714130118654130152487Rat
11455017LOC108350728uncharacterized LOC1083507284120163047120164389Rat
11461811LOC108350742uncharacterized LOC1083507424140656378140666835Rat
11081189LOC500265nucleoporin 50-like4128264112128267776Rat
11469179LOC108350740uncharacterized LOC1083507404134178846134183878Rat
11469674LOC108350730uncharacterized LOC1083507304123272132123294291Rat
11470597LOC108350736uncharacterized LOC1083507364129680778129690167Rat
11358358LOC108350743uncharacterized LOC1083507434141997425142006546Rat
11435432LOC108350819uncharacterized LOC1083508194122505378122627742Rat
11357165LOC108350733uncharacterized LOC1083507334126901623126927870Rat
11431714LOC108350729glyceraldehyde-3-phosphate dehydrogenase pseudogene4121439306121440757Rat
11453727LOC108350870glyceraldehyde-3-phosphate dehydrogenase pseudogene4123573149123574032Rat
11432238LOC108350734uncharacterized LOC1083507344126953162126981104Rat
11412448LOC108350820ribosome biogenesis regulatory protein homolog4128095623128098790Rat
11418581LOC108350844uncharacterized LOC1083508444143266215143272319Rat
11408865LOC108350741uncharacterized LOC1083507414139683245139690535Rat
11398915Trnal-aag2transfer RNA leucine (anticodon AAG) 24126941939126942020Rat
11410861LOC10835080140S ribosomal protein S11-like4123764849123765341Rat
11400782LOC108350872uncharacterized LOC1083508724130537776130548325Rat
11400915LOC108350821glyceraldehyde-3-phosphate dehydrogenase pseudogene4130078501130082491Rat
11400916LOC108350874uncharacterized LOC1083508744141021819141023201Rat
11380647LOC108350745uncharacterized LOC1083507454146071280146086117Rat
11380835LOC108350738uncharacterized LOC1083507384132608924132610834Rat
11478132LOC108350744uncharacterized LOC1083507444145091322145113115Rat
11504573LOC108350732uncharacterized LOC1083507324126884411126899044Rat
11479425LOC108348222GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase pseudogene4139024096139026202Rat
11480110LOC108350739uncharacterized LOC1083507394133415250133420934Rat
11508794LOC108350727uncharacterized LOC1083507274119865784119877033Rat
11513147LOC108350822uncharacterized LOC1083508224135374528135384688Rat
11494882LOC108350735uncharacterized LOC1083507354129863376129880065Rat
11484082LOC108350731uncharacterized LOC1083507314126806910126876502Rat
11518111LOC108350737uncharacterized LOC1083507374132615974132624020Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10156D4Mit181854131532260131532452Ratregion
10157D4Wox171574131532286131532442Ratregion
10158D4Arb162514131532269131532519Ratregion
33933D4Mit161144127777294127777403Ratregion
33995D4Mit191454145373934145374062Ratregion
34001D4Mit171474132455408132455556Ratregion
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34174D4Mgh71434137666258137666428Ratregion
34174D4Mgh71434136351734136351904Ratregion
34256D4Mgh181244125884464125884552Ratregion
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36143D4Rat601194145611768145611886Ratregion
36175D4Rat531924122483467122483659Ratregion
36271D4Rat811424138199017138199153Ratregion
37214D4Rat1052284125765814125766052Ratregion
35262D4Rat791584129614905129615056Ratregion
35278D4Rat462994120400597120400898Ratregion
35315D4Rat821364141127649141127791Ratregion
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37100D4Rat522344125394610125394835Ratregion
37202D4Rat942144141586953141587133Ratregion
37850D4Rat1041514136908430136908581Ratregion
36508D4Rat482134123478354123478566Ratregion
34902D4Rat551754125671525125671711Ratregion
35046D4Rat583624133776133133776479Ratregion
35070D4Rat571884132136266132136446Ratregion
35088D4Rat591804146086918146087100Ratregion
39634D4Rat1852364124432940124433159Ratregion
39768D4Rat1831384122848831122848960Ratregion
39930D4Rat1881334126739594126739730Ratregion
38074D4Rat1212324131238668131238897Ratregion
40642D4Rat1952154140425986140426293Ratregion
40642D4Rat1952154140425986140426192Ratregion
38412D4Rat882394129783241129783479Ratregion
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42152D4Arb223184123642406123642721Ratregion
42712D4Rat2342414122933728122933948Ratregion
42716D4Rat2732384131310159131310420Ratregion
42717D4Rat2722004127887545127887754Ratregion
42718D4Rat2352224132245957132246187Ratregion
42719D4Rat2371434133505086133505232Ratregion
42720D4Rat2742184138813963138814171Ratregion
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42722D4Rat2393264139529020139529341Ratregion
42724D4Rat2402144144125660144125888Ratregion
42724D4Rat2402144144085608144085836Ratregion
41232D4Rat1821414119705414119705552Ratregion
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43829D4Got832314120619002120619229Ratregion
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43833D4Wox21474126925735126925891Ratregion
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43835D4Got941474128892772128892918Ratregion
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43840D4Got1072934138114390138114682Ratregion
43841D4Got1601494144484572144484720Ratregion
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43845D4Got1171864143704850143705035Ratregion
43849D4Got116874143713247143713333Ratregion
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43853D4Wox11054135913868135913983Ratregion
43855D4Got1061534136827355136827507Ratregion
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1631230D4Got2292554124115332124115589Ratregion
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1641048D4Got3112394143751956143752194Ratregion
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1641089D4Wox562944123713414123713707Ratregion
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7193069BI2780821774145040358145040534Ratregion
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5025406RH1281921954122644209122644403Ratregion
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502793736.MMHAP88FLD6.seq1644123991337123991500Ratregion
5030667BE1075341604123792057123792216Ratregion
5033365RH1385681654123824523123824687Ratregion
5025560RH1287912124145587539145587750Ratregion
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505216708.MMHAP84FRC8.seq1714121902726121902896Ratregion
505220531.MMHAP7FRC10.seq1894132668161132668349Ratregion
5055347RH1437491604145570464145570623Ratregion
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5499593G66214784145054914145054991Ratregion
5500563RH1359991454145471825145471969Ratregion
5499909UniSTS:2354952114123451852123452062Ratregion
5499911UniSTS:2354961374122855453122855589Ratregion
5500021UniSTS:2362041104119764829119764938Ratregion
5501005PMC117179P16974145322240145322936Ratregion
5501640UNH10423114123002020123002330Ratregion
5500178D6Mit1417304145979550145980279Ratregion
5499917UniSTS:2355232094145587411145587619Ratregion
5501035PMC124275P24704119911355119911824Ratregion
5501253PMC170950P13904144415399144415788Ratregion
5501414Ogg104145286983145288270Ratregion
5501594RH369058854123156128123157012Ratregion
5504490PMC23053P21104145581092145581201Ratregion
5504704PMC58532P12444120140086120140795Ratregion
5501534RH468973694129181679129182047Ratregion
5501622REN62H019764132645446132646421Ratregion
5502134MARC_5405-5406:996690354:1634125659077125659139Ratregion
5502936Srgap311204144639153144640272Ratregion
5506895G474331484132224068132224215Ratregion
5502409RH1247491514119748200119748350Ratregion
11565154D4Nirs82084120086953120087161Ratregion
Position Markers

Flank 1: (D4Rat182)
Rat AssemblyChrPosition (strand)Source
Rnor_6.04119,705,414 - 119,705,552NCBI
Rnor_5.04184,956,749 - 184,956,887UniSTS
RGSC_v3.44121,990,539 - 121,990,678RGD
RGSC_v3.44121,990,540 - 121,990,678UniSTS
RGSC_v3.14122,235,020 - 122,235,159RGD
Celera4109,220,824 - 109,220,962UniSTS
Cytogenetic Map4q34UniSTS
SHRSP x BN Map454.33UniSTS
SHRSP x BN Map454.33RGD
Peak: (D4Arb16)
Rat AssemblyChrPosition (strand)Source
Rnor_6.04131,532,269 - 131,532,519NCBI
Rnor_5.04196,023,944 - 196,024,194UniSTS
RGSC_v3.44133,939,407 - 133,939,659RGD
RGSC_v3.44133,939,408 - 133,939,658UniSTS
Celera4120,589,305 - 120,589,547UniSTS
Cytogenetic Map4q34UniSTS
RH 3.4 Map4801.3UniSTS
RH 3.4 Map4801.3RGD
RH 2.0 Map4863.3RGD
SHRSP x BN Map458.74RGD
FHH x ACI Map475.85RGD
Flank 2: (D4Rat59)
Rat AssemblyChrPosition (strand)Source
Rnor_6.04146,086,918 - 146,087,100NCBI
Rnor_5.04209,380,165 - 209,380,347UniSTS
RGSC_v3.44150,047,799 - 150,048,167RGD
RGSC_v3.44150,047,973 - 150,048,155UniSTS
RGSC_v3.14150,292,814 - 150,292,996RGD
Celera4135,831,416 - 135,831,598UniSTS
RH 3.4 Map4946.8UniSTS
RH 3.4 Map4946.8RGD
RH 2.0 Map4934.0RGD
SHRSP x BN Map471.41RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473786419132455556Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)475258970120258970Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)475258970120258970Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)476567036121567036Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)479555067124555067Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)481959983152055009Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)484475257178931073Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)485794049129615056Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486312589146942261Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486312589147702403Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486438317168047091Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486532519131532519Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487136446132136446Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487136446132136446Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)494414208139414208Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494893247168046938Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)499066823144066823Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105277348150277348Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4105682594150682594Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4105971071168047091Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106347236151347236Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4108876717169215811Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109636356154636356Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109636356154636356Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4112807675157807675Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4115372758150038284Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4116726724157291438Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4117926139162926139Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4119705414146087100Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4120318422146087100Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120400597146942261Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4123111827168111827Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123478354168478354Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4123587009168587009Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4124442168169442168Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4125884464168047091Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4128602727173602727Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4131834282176834282Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4131864442176864442Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132455408168047091Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (VE) (CMO:0000132)4134917642179917642Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4136351734180689124Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4136908430182878540Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4137171018182171018Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4145373934176509907Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4145547014184226339Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4145547014184226339Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146086918168047091Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Gcr1

RGD Curation Notes
Note Type Note Reference