Gcr1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Gcr1 (Gastric cancer resistance QTL 1) Rattus norvegicus

Symbol: Gcr1
Name: Gastric cancer resistance QTL 1
RGD ID: 70201
Trait: stomach morphology trait   (VT:0000470)    
Measurement Type: stomach tumor susceptibility score   (CMO:0002043)    
LOD Score: 2.7
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24120,260,281 - 147,278,687RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04119,705,414 - 146,087,100RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04184,956,749 - 209,380,347RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44121,990,539 - 150,048,167RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.14144,844,971 - 150,292,996RGD
Cross Type: Not Available
Strains Crossed: ACI/N BUF/N 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
necropsy  (IDA)

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
BUF/N  (IEA)

References

References - curated
# Reference Title Reference Citation
1. QTL Data Transfer QTL data import from the RatMap database
2. Chromosomal mapping of genes controlling development, histological grade, depth of invasion, and size of rat stomach carcinomas. Ushijima T, etal., Cancer Res 2000 Feb 15;60(4):1092-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3594Rpn1ribophorin I4120543667120565069Rat
3960Vhlvon Hippel-Lindau tumor suppressor4146772483146779376Rat
71067Gpr27G protein-coupled receptor 274132328364132329497Rat
3253Cntn3contactin 34134841268135214460Rat
3903Trhthyrotropin releasing hormone4124742111124777094Rat
70918Klf15KLF transcription factor 154122965718122978403Rat
70938Il5rainterleukin 5 receptor subunit alpha4139630652139664593Rat
69339Nup210nucleoporin 2104123511558123609874Rat
3092Mitfmelanocyte inducing transcription factor4130409020130621145Rat
2664Gata2GATA binding protein 24120654205120667763Rat
69079Wnt7aWnt family member 7A4123863108123908981Rat
2933Itpr1inositol 1,4,5-trisphosphate receptor, type 14141187377141554240Rat
2281Cav3caveolin 34145582168145598142Rat
68439Bhlhe40basic helix-loop-helix family, member e404141618453141624154Rat
2176Atp2b2ATPase plasma membrane Ca2+ transporting 24146894602147208060Rat
3239Oxtroxytocin receptor4145598549145614674Rat
620280Prok2prokineticin 24132346681132361754Rat
629473Camk1calcium/calmodulin-dependent protein kinase I4146481196146492039Rat
632283Ghrlghrelin and obestatin prepropeptide4146865712146869621Rat
71039Mgllmonoglyceride lipase4121192186121294187Rat
621168Ogg18-oxoguanine DNA glycosylase4146474701146481959Rat
621294Aldh1l1aldehyde dehydrogenase 1 family, member L14123059989123106471Rat
621668Grip2glutamate receptor interacting protein 24124271456124356538Rat
708509Vom1r90vomeronasal 1 receptor 904122139053122148056Rat
628685Fbln2fibulin 24123704289123763857Rat
68321Sec61a1SEC61 translocon subunit alpha 14120973519120987871Rat
620172Frmd4bFERM domain containing 4B4129895401130222070Rat
620551Tmf1TATA element modulatory factor 14129759952129785705Rat
708572Arl6ip5ADP-ribosylation factor like GTPase 6 interacting protein 54129810650129838628Rat
621361Cntn4contactin 44138624584139622499Rat
68373Ruvbl1RuvB-like AAA ATPase 14120932486120967400Rat
621084Uba3ubiquitin-like modifier activating enzyme 34129789526129810707Rat
619857Grm7glutamate metabotropic receptor 74143730862144613230Rat
708391Vom1r97vomeronasal 1 receptor 974122361863122364034Rat
1304561Chchd6coiled-coil-helix-coiled-coil-helix domain containing 64121803501122024209Rat
708384Vom1r102vomeronasal 1 receptor 1024122537934122545602Rat
708395Vom1r101vomeronasal 1 receptor 1014122499102122500235Rat
61912Slc6a6solute carrier family 6 member 64124195186124268880Rat
620858Tpra1transmembrane protein adipocyte associated 14121364093121375275Rat
3201Nr2c2nuclear receptor subfamily 2, group C, member 24124610216124666813Rat
62008Cntn6contactin 64137354886137751712Rat
61908Rab7aRAB7A, member RAS oncogene family4120461966120510756Rat
620122Chl1cell adhesion molecule L1-like4136291504136505830Rat
621807CnbpCCHC-type zinc finger, nucleic acid binding protein4120302768120311694Rat
1304842Mtmr14myotubularin related protein 144146386949146429990Rat
1305008Suclg2succinate-CoA ligase GDP-forming subunit beta4128067031128337146Rat
1306723Prickle2prickle planar cell polarity protein 24124869655125214862Rat
1305577Mcm2minichromosome maintenance complex component 24121346434121360962Rat
1305589Fgd5FYVE, RhoGEF and PH domain containing 54124497061124594564Rat
1306392Il17rcinterleukin 17 receptor C4146618321146631444Rat
1305815Podxl2podocalyxin-like 24121306224121338070Rat
1307077RybpRING1 and YY1 binding protein4132876260132928328Rat
1305760XpcXPC complex subunit, DNA damage recognition and repair factor4123993670124020922Rat
1307312Ppp4r2protein phosphatase 4, regulatory subunit 24133454555133495486Rat
1306993Rad18RAD18 E3 ubiquitin protein ligase4145735654145821102Rat
1307582Rpusd3RNA pseudouridine synthase D34146553743146562789Rat
1309939Sumf1sulfatase modifying factor 14141078735141160711Rat
1308857Trnt1tRNA nucleotidyl transferase 14139681115139703611Rat
1307688Isy1ISY1 splicing factor homolog4120276535120297227Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133213357133305586Rat
1308770Mrps25mitochondrial ribosomal protein S254124668320124680086Rat
1305250Pdzrn3PDZ domain containing RING finger 34133770736133996959Rat
1311706Hdac11histone deacetylase 114123645873123667407Rat
1560552Eefseceukaryotic elongation factor, selenocysteine-tRNA-specific4120719616120915779Rat
1305225Ccdc174coiled-coil domain containing 1744124392183124419035Rat
1359401Vom1r95vomeronasal 1 receptor 954122285444122286388Rat
1309584Irak2interleukin-1 receptor-associated kinase 24146786004146842615Rat
1303172Fancd2FA complementation group D24146679014146743422Rat
1306889Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 94125290633125462988Rat
1310433Setd5SET domain containing 54146217172146294896Rat
1311566Emc3ER membrane protein complex subunit 34146663065146678976Rat
1310746Chchd4coiled-coil-helix-coiled-coil-helix domain containing 44123968264123977398Rat
1359357EogtEGF domain specific O-linked N-acetylglucosamine transferase4129718897129756558Rat
1359363Abtb1ankyrin repeat and BTB domain containing 14121299302121305667Rat
1308363Txnrd3thioredoxin reductase 34122072548122112493Rat
1308669Foxp1forkhead box P14131559599132155092Rat
1549781Vom1r96vomeronasal 1 receptor 964122334287122335270Rat
1309212Cpne9copine family member 94146429961146454335Rat
1310096Arpc4actin related protein 2/3 complex, subunit 44146522255146532784Rat
1305971Lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated4124021023124027269Rat
1306788Lrig1leucine-rich repeats and immunoglobulin-like domains 14127130899127230956Rat
1305768Cfap100cilia and flagella associated protein 1004122914693122938994Rat
1310533Crbncereblon4139701154139719949Rat
1309412Creld1cysteine-rich with EGF-like domains 14146631883146641493Rat
1308963Lmcd1LIM and cysteine-rich domains 14145393153145452049Rat
1308811Slc25a26solute carrier family 25 member 264127036704127131026Rat
1305397Rbsnrabenosyn, RAB effector4124682228124712578Rat
1562113Cideccell death-inducing DFFA-like effector c4146569288146582173Rat
1563166Kbtbd8kelch repeat and BTB domain containing 84127675967127688785Rat
1560871Plxna1plexin A14121737934121782901Rat
1563152Srgap3SLIT-ROBO Rho GTPase activating protein 34145839369146070556Rat
1560289C4h3orf20similar to human chromosome 3 open reading frame 204124422033124470657Rat
1563492Abcf2-ps2ATP binding cassette subfamily F member 2, pseudogene 24137093916137096351Rat
1562010Ssuh2ssu-2 homolog4145502942145521881Rat
1561981Dnajb8DnaJ heat shock protein family (Hsp40) member B84120681918120685108Rat
1562716Tcp1-ps1t-complex protein 1, pseudogene 14120705645120707221Rat
1564009Tada3transcriptional adaptor 34146510213146521975Rat
1564145Lrrn1leucine rich repeat neuronal 14140476752140520210Rat
1561296ZxdcZXD family zinc finger C4122882389122914486Rat
1560852Thumpd3THUMP domain containing 34146185422146209802Rat
1561565Ier3ip1-ps1immediate early response 3 interacting protein 1, pseudogene 14132342131132342625Rat
735148Il17reinterleukin 17 receptor E4146604547146618206Rat
1562419Prrt3proline-rich transmembrane protein 34146641173146650487Rat
1359098Vom1r94vomeronasal 1 receptor 944122274165122275145Rat
1562825Chst13carbohydrate sulfotransferase 134122824022122837940Rat
1562830Arl8bADP-ribosylation factor like GTPase 8B4141748634141792605Rat
1564292Nop2-ps4NOP2 nucleolar protein, pseudogene 44128479630128481920Rat
1549694Vom1r98vomeronasal 1 receptor 984122375967122376911Rat
1549711Tmem43transmembrane protein 434123977680123992823Rat
1311255Ttll3tubulin tyrosine ligase like 34146532958146558425Rat
1549740Vom1r93vomeronasal 1 receptor 934122234616122242958Rat
1559800Hmces5-hydroxymethylcytosine binding, ES cell specific4120392812120415616Rat
1549727Vom1r100vomeronasal 1 receptor 1004122468150122471495Rat
1563030Tafa1TAFA chemokine like family member 14128738028129244223Rat
1560353Rpl13-ps10ribosomal protein L13, pseudogene 104136905705136907969Rat
727967Lhfpl4LHFPL tetraspan subfamily member 44146317110146340073Rat
1583000Eef1g-ps15eukaryotic translation elongation factor 1 gamma, pseudogene 154127841801127847162Rat
1584828Brpf1bromodomain and PHD finger containing, 14146456325146472781Rat
1585995Kpna1-ps6karyopherin subunit alpha 1, pseudogene 64136818724136820326Rat
1585997Elob-ps12elongin B, pseduogene 124126816689126817049Rat
1585998Hmgb2-ps2high mobility group box 2, pseudogene 24122120684122121727Rat
1585999Kbtbd12kelch repeat and BTB domain containing 124121014636121088701Rat
1586441Rplp0-ps15ribosomal protein lateral stalk subunit P0, pseudogene 154126179018126180835Rat
1586482Gxylt2glucoside xylosyltransferase 24133347230133449708Rat
1583218Rps25l3ribosomal protein S25 like 34120933765120934259Rat
1564924Lmod3leiomodin 34129843964129858684Rat
1565292Copg1COPI coat complex subunit gamma 14120366540120392502Rat
1565997Fancd2osFANCD2 opposite strand4146740863146747547Rat
1564573Vom1r92vomeronasal 1 receptor 924122212290122225494Rat
1565488Jagn1jagunal homolog 14146591577146596287Rat
1565882SetmarSET domain and mariner transposase fusion gene4141046058141058183Rat
1565596H1f10H1.10 linker histone4120440515120441578Rat
1563633Edem1ER degradation enhancing alpha-mannosidase like protein 14141797631141829717Rat
1359555Sec13SEC13 homolog, nuclear pore and COPII coat complex component4146877739146891130Rat
1565300Rab43RAB43, member RAS oncogene family4120249650120269174Rat
1591392Prr20eproline rich 20E4121566632121574734Rat
1589573Slc41a3solute carrier family 41, member 34123109555123154766Rat
1586185Eif4e3eukaryotic translation initiation factor 4E family member 34132258502132301808Rat
1592322Rpl13-ps14ribosomal protein L13, pseudogene 144134558719134564121Rat
1587777Uroc1urocanate hydratase 14122844933122876584Rat
1587811C4h3orf22similar to human chromosome 3 open reading frame 224122817681122822175Rat
1586017Tatdn2TatD DNase domain containing 24146845156146865708Rat
1586018Psmc4-ps3proteasome 26S subunit, ATPase 4, pseudogene 34142081325142082608Rat
1586019Pgk1-ps9phosphoglycerate kinase 1, pseudogene 94139263587139265702Rat
1586020G3bp1-ps8G3BP stress granule assembly factor 1, pseudogene 84136952803136954495Rat
1587829Vom1r104vomeronasal 1 receptor 1044122768885122769850Rat
1589884Rps7-ps6ribosomal protein S7, pseudogene 64140380731140381276Rat
1589006Vom1r99vomeronasal 1 receptor 994122430887122431711Rat
1586021Tuba1b-ps2tubulin, alpha 1B, pseudogene 24134342304134343235Rat
1586024Hnrnpa1-ps45heterogeneous nuclear ribonucleoprotein A1, pseudogene 454127704697127705507Rat
1586025Magi1membrane associated guanylate kinase, WW and PDZ domain containing 14126205663126811354Rat
1597443Tafa4TAFA chemokine like family member 44129437466129671320Rat
1592353Smtn-ps1smoothelin, pseudogene 14133742253133744275Rat
1590113Apool2apolipoprotein O-like 24127274472127275699Rat
1598136Brk1BRICK1 subunit of SCAR/WAVE actin nucleating complex4146750821146766050Rat
1596313Iqsec1IQ motif and Sec7 domain ArfGEF 14123168719123488300Rat
2316381Vom1r-ps87vomeronasal 1 receptor pseudogene 874123930673123931299Rat
2316382Vom1r-ps86vomeronasal 1 receptor pseudogene 864122686949122687878Rat
2316383Vom1r-ps85vomeronasal 1 receptor pseudogene 854122625876122626474Rat
2316384Vom1r-ps84vomeronasal 1 receptor pseudogene 844122613355122614266Rat
2316385Vom1r-ps83vomeronasal 1 receptor pseudogene 834122608252122609154Rat
2316386Vom1r-ps82vomeronasal 1 receptor pseudogene 824122595522122596518Rat
2316387Vom1r-ps81vomeronasal 1 receptor pseudogene 814122586021122586924Rat
2316388Vom1r-ps80vomeronasal 1 receptor pseudogene 804122396580122396744Rat
2316389Vom1r-ps79vomeronasal 1 receptor pseudogene 794122394932122395749Rat
2316390Vom1r-ps78vomeronasal 1 receptor pseudogene 784122370207122371034Rat
2316391Vom1r-ps77vomeronasal 1 receptor pseudogene 774122311684122312578Rat
2316408Vom1r103vomeronasal 1 receptor 1034122723226122730713Rat
2319160Dynll1l1dynein light chain LC8-type 1 like 14126581958126582522Rat
2319333Apoo-ps2apolipoprotein O, pseudogene 24146587525146589978Rat
2319475Ggact-ps2gamma-glutamylamine cyclotransferase, pseudogene 24146504023146505562Rat
2319531Cct3-ps6chaperonin containing TCP1 subunit 3, pseudogene 64146490625146500878Rat
2320195Ssbp1-ps1single stranded DNA binding protein 1, pseudogene 14126884577126890225Rat
2323419Polr2m-ps3RNA polymerase II subunit M, pseudogene 34122141718122144244Rat
2323009Mdfic2MyoD family inhibitor domain containing 24130845260130948054Rat
2323735Gsta4-ps4glutathione S-transferase alpha 4, pseudogene 44120318859120320679Rat
2323903Psma3-ps3proteasome 20S subunit alpha 3, pseudogene 34127029644127030164Rat
6492017Rpl4-ps2ribosomal protein L4, pseudogene 24136330114136331466Rat
6487745Actg1-ps3actin, gamma 1, pseudogene 34140834718140835768Rat
6491660Thumpd3-as1THUMPD3 antisense RNA 14146210520146217026Rat
7499834LOC102548450uncharacterized LOC1025484504146564239146568426Rat
7508836LOC102549269uncharacterized LOC1025492694128652499128742024Rat
7512196Vom1r97l1vomeronasal 1 receptor 97 like 14122166102122172598Rat
7539827LOC102548902uncharacterized LOC1025489024124160535124201206Rat
7650153LOC102552138uncharacterized LOC1025521384120450176120462899Rat
7623898LOC102548337uncharacterized LOC1025483374146168757146185408Rat
7609120LOC102548080uncharacterized LOC1025480804145820794145887127Rat
7609272LOC102554878uncharacterized LOC1025548784121271560121272968Rat
7643253Rrs1-ps7ribosome biogenesis regulator 1 homolog, pseudogene 74128616299128619872Rat
7661237LOC102554570uncharacterized LOC1025545704125334112125359366Rat
7590189LOC102555978uncharacterized LOC1025559784125459772125773012Rat
7591615LOC102555035uncharacterized LOC1025550354121464929121479571Rat
7562079LOC102554068uncharacterized LOC1025540684120590582120622585Rat
7550029LOC102555094uncharacterized LOC1025550944121511450121516890Rat
7565639LOC102549329uncharacterized LOC1025493294136745668136762242Rat
7553480LOC102554857uncharacterized LOC1025548574124441221124498179Rat
7731047LOC102555697uncharacterized LOC1025556974133577659133647925Rat
7696532LOC102554942uncharacterized LOC1025549424121401011121454903Rat
7669867LOC102555037uncharacterized LOC1025550374132153125132201203Rat
7723051LOC102547466uncharacterized LOC1025474664141491266141542083Rat
9070006LOC103692189uncharacterized LOC1036921894126124290126129626Rat
9124640LOC10369217960S ribosomal protein L34 pseudogene4120362254120362604Rat
9229745LOC103692198uncharacterized LOC1036921984132521989132539049Rat
9252280LOC103692180uncharacterized LOC1036921804120584341120590943Rat
9301889LOC103692187uncharacterized LOC1036921874124712546124722083Rat
11461811LOC108350742uncharacterized LOC1083507424141571301141599424Rat
11081189Nup50-ps1nucleoporin 50, pseudogene 14128787567128789296Rat
11469179LOC108350740uncharacterized LOC1083507404134210738134238146Rat
11358358LOC108350743uncharacterized LOC1083507434143321781143331269Rat
11398915Trnal-aag2transfer RNA leucine (anticodon AAG) 24127454175127454256Rat
11410861Rps11-ps14ribosomal protein S11, pseudogene 144124395855124398410Rat
11400916LOC108350874uncharacterized LOC1083508744141940905141942281Rat
11380647LOC108350745uncharacterized LOC1083507454147262869147277704Rat
11380835LOC108350738uncharacterized LOC1083507384132797064132799375Rat
11479425Alg11-ps1ALG11, alpha-1,2-mannosyltransferase, pseudogene 14139862203139863619Rat
11480110LOC108350739uncharacterized LOC1083507394133581761133598613Rat
11508794LOC108350727uncharacterized LOC1083507274120415759120430399Rat
11484912Rpl30-ps10ribosomal protein L30, pseudogene 104135972768135975698Rat
41167200Vom1r114vomeronasal 1 receptor 11344122679045122680064Rat
41203173LOC120102365uncharacterized LOC1201023654147065997147066964Rat
41234562LOC120102340uncharacterized LOC1201023404121723881121732860Rat
41355210LOC120102710small nucleolar RNA SNORA174123361345123361441Rat
41383162LOC120102335uncharacterized LOC1201023354120733062120737659Rat
41140809LOC120102666small nucleolar RNA SNORA174133135428133135559Rat
41284758Trnas-aga13transfer RNA serine (anticodon AGA) 134140797732140797813Rat
41091722LOC120102670small nucleolar RNA SNORA174125861717125861845Rat
41146337LOC120102364uncharacterized LOC1201023644146787484146795910Rat
41327928Rnu6-433RNA, U6 small nuclear 4334131099002131099108Rat
41361992LOC120102607U6 spliceosomal RNA4135562032135562145Rat
41093674LOC120102354uncharacterized LOC1201023544133142571133164384Rat
41120855LOC120102337uncharacterized LOC1201023374121604758121615075Rat
41188500LOC120102506uncharacterized LOC1201025064144039749144041146Rat
41262491LOC120102350uncharacterized LOC1201023504132559007132560324Rat
41121964Cox6c-ps3cytochrome c oxidase subunit 6C, pseudogene 34127416018127417910Rat
41150042LOC120102331uncharacterized LOC1201023314120353804120366389Rat
41153665LOC120102642small nucleolar RNA SNORA294120707367120707503Rat
41178684Prune2-ps1prune homolog 2 with BCH domain, pseudogene 14130327921130328679Rat
41263255LOC120102348uncharacterized LOC1201023484129815657129821673Rat
41393297Trnap-agg26transfer RNA proline (anticodon AGG) 264146300941146301014Rat
41180729LOC120102601U6 spliceosomal RNA4144143261144143356Rat
41394821LOC120102171uncharacterized LOC1201021714126995970126999766Rat
41156543LOC120102345uncharacterized LOC1201023454126097347126157088Rat
41216201LOC120102586U6 spliceosomal RNA4146200474146200580Rat
41288887LOC120102344uncharacterized LOC1201023444125657909125684813Rat
41344928LOC120102718small nucleolar RNA SNORA174137032326137032442Rat
41126171LOC120102771small nucleolar RNA U34132053395132053495Rat
41158046LOC120102501uncharacterized LOC1201025014139283893139296350Rat
41070385Snora44small nucleolar RNA, H/ACA box 444126415989126416119Rat
41070524C18h18orf32-ps1similar to human chromosome 18 open reading frame 32, pseudogene 14133734357133734611Rat
41102695LOC120102611U7 small nuclear RNA4136623724136623786Rat
41127226LOC120102641small Cajal body-specific RNA 164135361243135361421Rat
41127828LOC120102339uncharacterized LOC1201023394121701048121712111Rat
41196182LOC120102769small nucleolar RNA U34146088309146088519Rat
41219320LOC120102505cyclin-dependent kinases regulatory subunit 2-like4144220612144220990Rat
41372663LOC120102573U6 spliceosomal RNA4139689094139689204Rat
41072523LOC120102179uncharacterized LOC1201021794136171929136192655Rat
41161138LOC120102336uncharacterized LOC1201023364121277566121278416Rat
41081553LOC120102498uncharacterized LOC1201024984126742553126760176Rat
41162659Actg1-ps9actin, gamma 1, pseudogene 94133306869133313492Rat
41162866Trnat-agu30transfer RNA threonine (anticodon AGU) 304126353506126353587Rat
41163084LOC120102358uncharacterized LOC1201023584133818078133839199Rat
41199103Trnav-aac19transfer RNA valine (anticodon AAC) 194121218174121218246Rat
41351198LOC120102180uncharacterized LOC1201021804136636923136641514Rat
41376499LOC120102333uncharacterized LOC1201023334120648227120658210Rat
41402055LOC120102752U2 spliceosomal RNA4146594912146595102Rat
41402798LOC120102332uncharacterized LOC1201023324120567736120572576Rat
41403052LOC120102750U2 spliceosomal RNA4146511607146511797Rat
41132129Gabarap-ps3GABA type A receptor-associated protein, pseudogene 34126518341126548868Rat
41352693LOC120102755U2 spliceosomal RNA4134969601134969762Rat
41377972LOC120102346uncharacterized LOC1201023464126183463126186067Rat
41166573Snu13-ps2small nuclear ribonucleoprotein 13, pseudogene 24144510658144511761Rat
41233243LOC120102174macrophage migration inhibitory factor-like4132485219132485730Rat
41011708LOC120102630small nucleolar RNA SNORA36 family4129770615129770745Rat
40949626LOC120102500uncharacterized LOC1201025004129086996129146558Rat
40953411LOC120102343uncharacterized LOC1201023434125386934125418673Rat
40980164LOC120102351RING1 and YY1 binding protein4132876260132929075Rat
40930702LOC120102497uncharacterized LOC1201024974126723866126732961Rat
40983794LOC120102360uncharacterized LOC1201023604138620225138624508Rat
41004547LOC120102499uncharacterized LOC1201024994129197518129420528Rat
40934392LOC120102689small nucleolar RNA SNORA174140680625140680738Rat
40962142LOC120102363translation initiation factor IF-2-like4146447443146458594Rat
40993191LOC120102703small nucleolar RNA SNORA174126026597126026707Rat
40943387LOC120102178uncharacterized LOC1201021784135763696135765816Rat
40996046LOC120102553U4 spliceosomal RNA4142973965142974049Rat
41024974LOC120102352uncharacterized LOC1201023524133042414133050061Rat
41049156LOC120102357uncharacterized LOC1201023574133676076133686958Rat
41313119LOC120102359uncharacterized LOC1201023594136616052136628878Rat
41314095LOC120102353uncharacterized LOC1201023534133100432133108825Rat
41025378LOC120102338uncharacterized LOC1201023384121690045121700753Rat
41246146LOC120102361uncharacterized LOC1201023614141728281141747563Rat
41246601LOC120102177uncharacterized LOC1201021774134335166134338245Rat
41247159LOC120102502uncharacterized LOC1201025024139299748139305639Rat
41318857LOC120102342uncharacterized LOC1201023424124637670124656902Rat
41053760LOC120102356uncharacterized LOC1201023564133648139133660193Rat
41335347Rnu6-131RNA, U6 small nuclear 1314129166306129166407Rat
41031424LOC120102347uncharacterized LOC1201023474128336735128342363Rat
41317445LOC120102593U6 spliceosomal RNA4144668340144668444Rat
41317950LOC120102724small nucleolar RNA SNORA174130392379130392510Rat
41223619LOC120102503uncharacterized LOC1201025034138789618138794102Rat
41337025LOC120102349uncharacterized LOC1201023494132466966132473095Rat
41227538LOC120102655small nucleolar RNA SNORA484121944388121944517Rat
41017193LOC120102762U2 spliceosomal RNA4142280446142280654Rat
41066235Eef1a1-ps16eukaryotic translation elongation factor 1 alpha 1, pseudogene 164145130360145132187Rat
41018384Psmb3-ps2proteasome 20S subunit beta 3, pseudogene 24127536885127537501Rat
41306468LOC120102496uncharacterized LOC1201024964126790194126802525Rat
41239321LOC120102362uncharacterized LOC1201023624141998399142016719Rat
41240645LOC120102176uncharacterized LOC1201021764134072462134077268Rat
41309288Rpl21-ps9ribosomal protein L21, pseudogene 94120819893120820436Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10156D4Mit181854131730729131730924Ratregion
10157D4Wox171574131730755131730914Ratregion
10158D4Arb162514131730738131730991Ratregion
33933D4Mit161144128289450128289560Ratregion
33995D4Mit191454146565735146565864Ratregion
34001D4Mit171474132642577132642728Ratregion
34106D4Mgh61654133370903133371042Ratregion
34174D4Mgh71434138503169138503340Ratregion
34256D4Mgh181244126395976126396065Ratregion
34367D4Mgh81064146446565146446691Ratregion
36143D4Rat601194146803311146803430Ratregion
36175D4Rat531924124380585124380778Ratregion
36271D4Rat811424139028970139029107Ratregion
37214D4Rat1052284126278101126278340Ratregion
35262D4Rat791584129854502129854654Ratregion
35278D4Rat462994120926564120926865Ratregion
35315D4Rat821364142041324142041467Ratregion
36898D4Rat801244130142051130142186Ratregion
37100D4Rat522344125920192125920418Ratregion
37850D4Rat1041514137755016137755168Ratregion
36508D4Rat482134123143783123143996Ratregion
34902D4Rat551754126192368126192555Ratregion
35046D4Rat583624133821995133822342Ratregion
35070D4Rat571884132326984132327165Ratregion
35088D4Rat591804147278504147278687Ratregion
39634D4Rat1852364125064558125064778Ratregion
39768D4Rat1831384123717924123718054Ratregion
39930D4Rat1881334127252528127252665Ratregion
38074D4Rat1212324131435943131436173Ratregion
40642D4Rat1952154141356262141356469Ratregion
40642D4Rat1952154141356262141356570Ratregion
38412D4Rat882394130018906130019145Ratregion
38458D4Rat951204129149351129149473Ratregion
38590D17Rat772174138998642138998682Ratregion
38866D4Rat872094127056296127056497Ratregion
38998D4Rat922224129998172129998394Ratregion
39158D4Rat11414120699429120699558Ratregion
39162D4Rat1162344130492986130493224Ratregion
42152D4Arb223184124264787124265103Ratregion
42712D4Rat2342414123802452123802675Ratregion
42716D4Rat2732384131508575131508837Ratregion
42719D4Rat2371434133675946133676093Ratregion
42720D4Rat2742184139648159139648368Ratregion
42721D4Rat2382004139725403139725596Ratregion
42722D4Rat2393264140371931140372255Ratregion
42723D4Rat2752434143083544143083794Ratregion
42724D4Rat2402144145325821145326050Ratregion
41232D4Rat1821414120260281120260420Ratregion
41362D10Rat1691554132570401132570548Ratregion
41500D4Rat1961514141235569141235720Ratregion
41502D4Rat1871464123826662123826812Ratregion
42711D4Rat2692294121132485121132697Ratregion
40974D4Rat1862014125121436125121651Ratregion
41594D4Rat1902564129812526129812798Ratregion
41616D4Rat1931574135850004135850165Ratregion
41796D4Rat2361364127263958127264101Ratregion
43829D4Got832314121139726121139954Ratregion
43830D4Got1481564120926546120926704Ratregion
43831D4Got821174123154343123154460Ratregion
43832D4Got931604126848713126848873Ratregion
43833D4Wox21474127437973127438130Ratregion
43833D4Wox21474143010164143010230Ratregion
43834D4Got982884131073658131073946Ratregion
43835D4Got941474129193486129193635Ratregion
43836D4Got95994129302326129302425Ratregion
43837D4Got150884129667204129667292Ratregion
43840D4Got1072934138945369138945662Ratregion
43841D4Got1601494145683146145683295Ratregion
43842D4Got1191514145399780145399931Ratregion
43845D4Got1171864144948937144949123Ratregion
43849D4Got116874144957334144957421Ratregion
43851D4Got1142154142610413142610628Ratregion
43853D4Wox11054136784053136784169Ratregion
43855D4Got1061534137673168137673321Ratregion
43857D4Got1251134146073937146074052Ratregion
60469D4Got961944129960443129960637Ratregion
60405D4Got1002024133675945133676147Ratregion
60406D4Got1011414136063094136063235Ratregion
60407D4Got1031524137934748137934900Ratregion
60408D4Got1051384139745505139745643Ratregion
60411D4Got1212474147246387147246636Ratregion
625808D4Got1041024139080774139080874Ratregion
62517D4Uia91704124915758124915928Ratregion
67765D4Uwm21644131873209131873379Ratregion
1631230D4Got2292554124746726124746984Ratregion
1628639D4Got2671624121063505121063667Ratregion
1628786D4Got2531494120656434120656583Ratregion
1639172D4Wox431594145618389145618548Ratregion
1641048D4Got3112394144996142144996430Ratregion
1641048D4Got3112394144996191144996430Ratregion
1641089D4Wox562944124194958124195252Ratregion
1641661D4Uia132234120633208120633431Ratregion
1633142D4Got2661874132308431132308618Ratregion
1633220D4Got2581674132700379132700546Ratregion
1633603D4Got2981304123069574123069704Ratregion
1640297D4Got2301494131890768131890919Ratregion
1635138D4Got2321214136289819136289940Ratregion
1636680D4Wox441394141623426141623565Ratregion
1636685D4Got2341914144208084144208275Ratregion
1636959D4Got2511414146873645146873771Ratregion
1637532D4Cebr21514132373212132373363Ratregion
1633948D4Got1511094138650889138650993Ratregion
1634438D4Got2592674141480540141480804Ratregion
7193069BI2780821774146239996146240173Ratregion
5038650AU0148191374121978002121978139Ratregion
5038652BE1364731144122894589122894703Ratregion
5038654AW7433154414125314007125314448Ratregion
5038656AU0176271314125601011125601142Ratregion
5038658BB4681911014126445402126445503Ratregion
7206666Mcm210824121346695121347777Ratregion
7206678Zxdc7074122894017122894724Ratregion
5036412Mitf1404130538293130538433Ratregion
5036472Rab7-ps12314120462698120462929Ratregion
5036523Nr2c21824124661479124661661Ratregion
5039122RH1275251974139700023139700220Ratregion
5036639AU0486801524130262374130262526Ratregion
5036961AU0497611884131873204131873394Ratregion
5036963AU0497682564146385076146385334Ratregion
5037129A001W261654132876338132876503Ratregion
5031252PMC114236P16674133310597133311048Ratregion
5033921RH1406232204124687474124687694Ratregion
5028663RH1259162534120973527120973780Ratregion
5031402PMC15869P12844120305089120305373Ratregion
5034197RH1417362004126205783126205983Ratregion
5034201RH1417502154120653422120653637Ratregion
5026350RH1318682024145835507145835709Ratregion
5029037RH1432741584120955412120956762Ratregion
5034381D3S39901764146899207146899383Ratregion
5034454BF4150922254146643779146644004Ratregion
5026588RH1327881834129761666129761849Ratregion
5031984AU0464722904144628939144629227Ratregion
5034690BG3744871014126212454126212555Ratregion
5032277AI9878561174146510460146510577Ratregion
5035062SHGC-773071344120302961120303095Ratregion
5032469D13Ertd614e2274137093946137094173Ratregion
5032469D13Ertd614e2274137093946137094173Ratregion
5029813BI2784421154121117284121117399Ratregion
5032605RH1346211944146765758146765952Ratregion
5034898AI1711371414146210566146210707Ratregion
5027319AW4555001134145451850145451963Ratregion
5030045AW5311821734124221697124221870Ratregion
5035198BE1024411694122914747122914916Ratregion
5027513AI5287721464120706024120706170Ratregion
5032985RH1372061944125334321125334515Ratregion
5025018AW546958864120415138120415224Ratregion
5025020BE1993181074125290924125291033Ratregion
5027703RH127371324146293134146293266Ratregion
5033297RH1383141234131596485131596608Ratregion
5025406RH1281921954123511544123511827Ratregion
5025406RH1281921954123511632123511827Ratregion
502793736.MMHAP88FLD6.seq1644124623000124623164Ratregion
5030667BE1075341604124423562124423722Ratregion
5033365RH1385681654124456030124456195Ratregion
5025560RH1287912124146779079146779291Ratregion
5028107X990432004139595452139595652Ratregion
5030759BF4045991724129207415129207587Ratregion
5028269D6Mit1781024126752841126752943Ratregion
5028281D7Mit2141154121009331121009446Ratregion
5033791RH1401361844131775302131775486Ratregion
5033805RH1401871844121292996121293180Ratregion
5028462AI4523371974145836955145837152Ratregion
5031195RH1026111244131560789131560913Ratregion
5054887RH1434821514146860270146860421Ratregion
5051413AW2604161044146663298146663402Ratregion
5051439AW2087701154135147641135147756Ratregion
5053463RH1426631554121357599121357755Ratregion
5056073RH1441672364125681904125682140Ratregion
5053901RH1429162664128335667128335933Ratregion
5056817RH1445971764144525486144525662Ratregion
5056889RH1446391984146175896146176094Ratregion
5055345RH1437481494136501892136502041Ratregion
5054603RH1433192754139703268139703543Ratregion
5059542BE0972371774146313574146313751Ratregion
5058530BF3931772294146752183146752412Ratregion
5058664BI2844191974123075227123075424Ratregion
5055933RH1440862024138802555138802757Ratregion
5055941RH1440912054127111887127112092Ratregion
5058804BI2780441734126584909126585082Ratregion
5058818BI2780821564146239996146240152Ratregion
5059698BE0976601584130453838130453996Ratregion
505216708.MMHAP84FRC8.seq1714122366340122366511Ratregion
505220531.MMHAP7FRC10.seq1894132855424132855613Ratregion
5055347RH1437491604146762075146762235Ratregion
5059018AI0712301954145451780145451975Ratregion
5055561RH1438722414129896509129896750Ratregion
5055717RH1439621144125021317125021431Ratregion
5049914RH1337541824141322729141322910Ratregion
5052349X593871414124742275124742416Ratregion
5058396AI0586821204127035618127035738Ratregion
5059072BF3874131614125290721125290883Ratregion
5059164AI1370802444125679610125679854Ratregion
5059206BF3876571624120337440120337598Ratregion
5050186RH1339112124124022682124022894Ratregion
5053267RH1425502544131766560131766814Ratregion
5053433RH1426461584129911850129912008Ratregion
5053511RH1426911004147029203147029303Ratregion
5057740BE1014911634146184331146184494Ratregion
5052458AI5051051274146481267146481394Ratregion
5052721RH1422321904124744795124744985Ratregion
5054123RH1430431894132913366132913555Ratregion
5051411AI327076814146532071146532152Ratregion
5054409RH1432071634146728537146728700Ratregion
5053389RH1426201054122896600122896705Ratregion
5051631D45913864140515805140515891Ratregion
5044150RH1304381834133230710133230893Ratregion
5040688RH1284262104121292996121294061Ratregion
5040944RH1285731944124684067124684261Ratregion
5044384RH1305722204141078766141078986Ratregion
5044486RH1306302204146743084146743304Ratregion
5044512RH1306462104121375023121375233Ratregion
5044582RH1306862064145597285145597676Ratregion
5041270RH1287601804123763541123763721Ratregion
5043748RH1302041844146208155146208339Ratregion
5044036RH1303731904122876329122876519Ratregion
5045946RH1314701804146210566146210746Ratregion
5044498RH1306372194146617915146618140Ratregion
5046578RH1318341964127115939127116135Ratregion
5047676RH1324642024146454112146454314Ratregion
5047678RH1324651864139703366139703552Ratregion
5045618RH1312812124120320186120320396Ratregion
5045852RH1314161804139701782139701962Ratregion
5046712RH1319112074125689937125690144Ratregion
5046794RH1319581934120507584120507777Ratregion
5048014RH1326591854122843727122844961Ratregion
5048020RH1326622184141827303141827521Ratregion
5046982RH1320662144126313294126313508Ratregion
5048268RH1328051814120303038120303219Ratregion
5047194RH1321872044123863233123864186Ratregion
5039578RH1277862204124594140124594360Ratregion
5042248RH1293251804141829491141829671Ratregion
5048494RH1329362084139699387139699567Ratregion
5049596RH1335721884123154544123154732Ratregion
5042758RH1296282204120720164120720384Ratregion
5039632RH1278171954123106251123106446Ratregion
7192189Wnt7a2074123865107123865314Ratregion
5042324RH1293692104133884426133884636Ratregion
5040026RH1280471814141096667141096848Ratregion
5040082RH1280791964124742158124742354Ratregion
5040096RH1280872024146480937146481139Ratregion
5042692RH1295891804146596070146596250Ratregion
5041016RH1286151854123992421123992606Ratregion
5043860RH1302692004142750452142750654Ratregion
5072596RH1369411894146481737146481926Ratregion
5075054RH1383721374122112235122112372Ratregion
5075086RH1383901564124431552124431708Ratregion
5072096RH1366482084146209549146209757Ratregion
5075518RH1386402484120288742120288990Ratregion
5075808RH1388091874124236686124236873Ratregion
5075836RH1388252204146532510146532730Ratregion
5072456RH1368601884124668370124668558Ratregion
5074386RH1379871714146557668146557839Ratregion
5072692RH1369971874124271492124271679Ratregion
5076578RH1392572444141079097141079340Ratregion
5076690RH1393221404130489447130489587Ratregion
5074928RH1383001254132190391132190516Ratregion
5075026RH1383562214129985162129985383Ratregion
5080588RH1416661814133837561133837742Ratregion
5080600RH1416731804121014656121014836Ratregion
5079494RH1410301874141791866141792053Ratregion
5076698RH1393272474141621578141621825Ratregion
5076858RH1394192104120666683120666893Ratregion
5076240RH1390612004146860115146860315Ratregion
5077316RH1396861504120276375120276525Ratregion
5077954RH1400571924131561676131561868Ratregion
5077962RH1400622014121438939121439138Ratregion
5079706RH1411561834123169578123169761Ratregion
5078202RH1402031934141509945141510139Ratregion
5078462RH1403571214120667412120667533Ratregion
5077732RH1399252154146209245146209460Ratregion
5079946RH1412941824124869754124869936Ratregion
5078074RH1401292024129719148129719350Ratregion
5080108RH1413872154146756249146756464Ratregion
5080152RH1414151924146926607146926799Ratregion
5079094RH1407322084122969799122970007Ratregion
5070560RH1345722144120564776120564989Ratregion
5080394RH1415541994132174664132174863Ratregion
5080418RH1415671824145367593145367775Ratregion
5078692RH1404931174129719148129719265Ratregion
5071248RH1349731984146865731146866872Ratregion
5070622RH1346081874146842135146842322Ratregion
5070666RH1346342104123168858123169068Ratregion
5073132RH1372571504146875552146875702Ratregion
5073868RH1376851254146558667146558792Ratregion
5074288RH1379301744131990256131990430Ratregion
5074316RH1379461504146644529146644679Ratregion
5073572RH1375141334146481260146481393Ratregion
5072434RH1368471814128067126128067307Ratregion
5074544RH1380781394124651528124651667Ratregion
5074752RH1381981404129328980129329120Ratregion
5071788RH1352851974124418648124418845Ratregion
5061728BF4027121474132200182132200329Ratregion
5066838AU0481211604146844318146844478Ratregion
5066924AU0480691344130561057130561191Ratregion
5067238AU0478771754120455427120455602Ratregion
5067378AU0477901404145614933145615073Ratregion
5067586AU0476561864129444645129444831Ratregion
5067614AU0476402594129444589129444848Ratregion
5068012AU0474031564134648769134648925Ratregion
5068296AU0472301604120870267120870427Ratregion
5068556AU0470751984145249917145250115Ratregion
5070087RH944651734146898953146899126Ratregion
5070199RH945291644141510212141510376Ratregion
5068912AU0468482374124678669124678901Ratregion
5069712AU046321994128363713128363814Ratregion
5070524D6Ertd263e2194146481234146481453Ratregion
5062176AI4544651334131560967131561100Ratregion
5062280BE1064701714125357065125358486Ratregion
5062280BE1064701714125358315125358367Ratregion
5062280BE1064701714125358315125358486Ratregion
5062416BE1066511604123864606123864766Ratregion
5064034AW5294051764145598568145598744Ratregion
5060868BF3958721934133893687133893880Ratregion
5060894BF4012781324131983230131983362Ratregion
5062588BF4034671194146893959146894078Ratregion
5060052BF3949641254146153840146153965Ratregion
5062152BE1128292004126758147126758347Ratregion
5062460BF3979221444120663301120663445Ratregion
5064028BE1204791624141831887141832049Ratregion
5064150BE1206761594145503010145503169Ratregion
5060900BF3959301334126327764126327897Ratregion
5062634BF4036331994123965703123965902Ratregion
5064452BE1080191574122921619122921776Ratregion
5064628BF3994621614130113532130113693Ratregion
5063088BF3983272474133494679133494926Ratregion
5066386AU0483872674126458110126458377Ratregion
5066414AU0483712474133675911133676158Ratregion
5064848BF399861904145837334145837424Ratregion
5061596BE1055681554124663311124663466Ratregion
5082111BF4096362064125379506125379712Ratregion
5087056BM3877431564129843486129843642Ratregion
5087112AI5026301814132277197132277459Ratregion
5087128BM3878071764122325697122325873Ratregion
5087809D6Wsu137e1954120564802120564997Ratregion
5088080Rab72374120506727120506964Ratregion
5082919BF3904131534123674366123674519Ratregion
5088149Wnt7a5474123863936123864483Ratregion
5088189AU0484202944134452549134452843Ratregion
5088451AU0485771084126444892126445000Ratregion
5089525AU0492072654142823737142824002Ratregion
5089561AU0492281684121283967121284135Ratregion
5090769AU0499522434145627947145628186Ratregion
5088911AU0488432984141306952141307250Ratregion
5084534AA9456802184129841201129841419Ratregion
5090153AU0495822144146602760146602974Ratregion
5085022AI0089351814133919855133920036Ratregion
5087704Atp2b22774146896756146897034Ratregion
5087741Cnbp1694120302771120302940Ratregion
5082237BI2743651254120297462120297587Ratregion
5090681AU0498971884122865191122865379Ratregion
5080874RH1418332064123107234123107440Ratregion
5090425AU0497431764121153246121153424Ratregion
5090613AU0498571314147265968147266101Ratregion
5088723AU0487391164124045167124045283Ratregion
5088731AU0487461714131460368131460539Ratregion
5088899AU0488362484120827695120827941Ratregion
5081100RH1419652134124628136124628349Ratregion
5081128RH1419812114146861336146861547Ratregion
5090135AU0495702914126909599126909890Ratregion
5082673BE1199791604123653032123653192Ratregion
5084476AA8504811514128067126128067277Ratregion
5081222RH1420352204122901435122901655Ratregion
5081308RH1420851904146263612146263802Ratregion
5083083BI2751072004124665111124665311Ratregion
5083233BG3803312314126728933126729164Ratregion
5081689BF4080771004146865461146865561Ratregion
5083819AA8008782304145735817145736047Ratregion
5503146RAB7A784120467340120468086Ratregion
5503328UniSTS:238061884146518727146518918Ratregion
5504510PMC262394P11274146865824146866894Ratregion
5504512PMC262394P304146868795146869548Ratregion
5504662PMC33279P14604133310167133310617Ratregion
5504268G436641284146894612146894740Ratregion
5504288D3S2930E1934146898106146898299Ratregion
5504652PMC327172P12814120651590120651871Ratregion
5504811ha210216974141704357141706054Ratregion
5504869ha271704145300255145300814Ratregion
5505414Oxtr6624145613875145614537Ratregion
5505460Prok2664132348155132348221Ratregion
5505486G197171654132876338132876503Ratregion
5505229Aldh1l1684123078906123078974Ratregion
5505622UniSTS:48678214994133083451133084950Ratregion
5505626UniSTS:48763811344132328363132329497Ratregion
5505544D12S20449644121304226121305190Ratregion
5505786UniSTS:49324111344132328363132329497Ratregion
5505822UniSTS:49555010484122168346122169394Ratregion
5505935UniSTS:49661912814130586060130587341Ratregion
5506242TXP2087544121529818121530572Ratregion
5506473AFM342xc104131050442131051010Ratregion
5506533GRM7_13887684144612440144613208Ratregion
5507047UniSTS:2242371814142168020142168201Ratregion
5507107UniSTS:2245851954120303411120303607Ratregion
5507057UniSTS:2242782054123543954123544159Ratregion
5499593G66214784146254556146254634Ratregion
5500563RH1359991454146663423146663568Ratregion
5499909UniSTS:2354952114123171312123171523Ratregion
5499911UniSTS:2354961374123724546123724683Ratregion
5500021UniSTS:2362041104120319710120319820Ratregion
5501005PMC117179P16974146514035146514732Ratregion
5501640UNH10423114123870702123871013Ratregion
5500178D6Mit1417304147171223147171953Ratregion
5499917UniSTS:2355232094146778951146779160Ratregion
5501035PMC124275P24704120462854120463324Ratregion
5501253PMC170950P13904145613871145614261Ratregion
5501414Ogg104146478876146480164Ratregion
5501594RH369058854124015064124015949Ratregion
5504490PMC23053P21104146772705146772815Ratregion
5504704PMC58532P12444120665358120666068Ratregion
5501534RH468973694129422482129422851Ratregion
5501622REN62H019764132832789132833761Ratregion
5502134MARC_5405-5406:996690354:1634126179895126179958Ratregion
5502936Srgap311204145839739145840859Ratregion
5502409RH1247491514120303077120303228Ratregion
11565154D4Nirs82084120612774120612983Ratregion
Position Markers

Flank 1: (D4Rat182)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24120,260,281 - 120,260,420 (+)MAPPER
Rnor_6.04119,705,414 - 119,705,552NCBI
Rnor_5.04184,956,749 - 184,956,887UniSTS
RGSC_v3.44121,990,539 - 121,990,678RGD
RGSC_v3.44121,990,540 - 121,990,678UniSTS
RGSC_v3.14122,235,020 - 122,235,159RGD
Celera4109,220,824 - 109,220,962UniSTS
SHRSP x BN Map454.33RGD
SHRSP x BN Map454.33UniSTS
Cytogenetic Map4q34UniSTS
Peak: (D4Arb16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24131,730,738 - 131,730,991 (+)MAPPER
Rnor_6.04131,532,269 - 131,532,519NCBI
Rnor_5.04196,023,944 - 196,024,194UniSTS
RGSC_v3.44133,939,407 - 133,939,659RGD
RGSC_v3.44133,939,408 - 133,939,658UniSTS
Celera4120,589,305 - 120,589,547UniSTS
RH 3.4 Map4801.3UniSTS
RH 3.4 Map4801.3RGD
RH 2.0 Map4863.3RGD
SHRSP x BN Map458.74RGD
FHH x ACI Map475.85RGD
Cytogenetic Map4q34UniSTS
Flank 2: (D4Rat59)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24147,278,504 - 147,278,687 (+)MAPPER
Rnor_6.04146,086,918 - 146,087,100NCBI
Rnor_5.04209,380,165 - 209,380,347UniSTS
RGSC_v3.44150,047,973 - 150,048,155UniSTS
RGSC_v3.44150,047,799 - 150,048,167RGD
RGSC_v3.14150,292,814 - 150,292,996RGD
Celera4135,831,416 - 135,831,598UniSTS
RH 3.4 Map4946.8RGD
RH 3.4 Map4946.8UniSTS
RH 2.0 Map4934.0RGD
SHRSP x BN Map471.41RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Gcr1

RGD Curation Notes
Note Type Note Reference