BpQTLcluster4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: BpQTLcluster4 (Blood pressure QTL cluster 4) Rattus norvegicus

Symbol: BpQTLcluster4
Name: Blood pressure QTL cluster 4
RGD ID: 70191
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: absolute change in mean arterial blood pressure   (CMO:0000533)    
LOD Score: 3.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8370,710,756 - 70,845,674RGD_MAPPER_PIPELINE
mRatBN7.2310,778,704 - 50,302,886RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.036,000,748 - 51,687,917RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0311,361,699 - 58,322,647RGDRnor5.0
RGSC_v3.436,373,335 - 47,588,420RGDRGSC3.4
RGSC_v3.136,373,636 - 47,484,792RGD
Cross Type: F2
Strains Crossed: BN SHR 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN  (IEA)
SHR  (IEA)

References

References - curated
# Reference Title Reference Citation
1. QTL Data Transfer QTL data import from the RatMap database
2. New target regions for human hypertension via comparative genomics. Stoll M, etal., Genome Res 2000 Apr;10(4):473-82.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308925Brd3bromodomain containing 331077316310829675Rat
41113215LOC120102083small nucleolar RNA SNORA2631082231010822430Rat
1305159Wdr5WD repeat domain 531083696410856682Rat
41292532Trnaa-agc47transfer RNA alanine (anticodon AGC) 4731084647710846558Rat
40972164LOC120102096U6atac minor spliceosomal RNA31085986810859993Rat
3610Rxraretinoid X receptor alpha31098983211076366Rat
70920Col5a1collagen type V alpha 1 chain31120842911356715Rat
621222Fcnbficolin B31139371311402198Rat
620320Olfm1olfactomedin 131152052211558240Rat
9339909LOC103691762microtubule-associated proteins 1A/1B light chain 3B pseudogene31164751611656307Rat
1595050Ppp1r26protein phosphatase 1, regulatory subunit 2631178150411790076Rat
1306233Pierce1piercer of microtubule wall 131179703111801568Rat
1309116Mrps2mitochondrial ribosomal protein S231180304411806341Rat
1591938Gbgt1globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)31182613111829745Rat
3533Ralgdsral guanine nucleotide dissociation stimulator31183968611880059Rat
2331Celcarboxyl ester lipase31188353211891035Rat
1305173Gtf3c5general transcription factor IIIC subunit 531189386711914187Rat
41017381Rnu6-592RNA, U6 small nuclear 59231192697611927077Rat
1311727Gfi1bgrowth factor independent 1B transcriptional repressor31194023211952989Rat
620124Tsc1TSC complex subunit 131196954712018591Rat
727909Spaca9sperm acrosome associated 931201937612028801Rat
1303144Ak8adenylate kinase 831202889512144468Rat
41345559Rnu1-136RNA, U1 small nuclear 13631214941612149579Rat
1592609Gtf3c4general transcription factor IIIC subunit 431215480312172795Rat
1304895Ddx31DEAD-box helicase 3131217282912238392Rat
620648Barhl1BarH-like homeobox 131224132712248649Rat
1564114Cfap77cilia and flagella associated protein 7731225845312381319Rat
1565673Ttf1transcription termination factor 131238462612409257Rat
11377311LOC108350345uncharacterized LOC10835034531240940612427689Rat
1565575Setxsenataxin31242809112480801Rat
1307089Ntng2netrin G231249257412551104Rat
1564993Med27mediator complex subunit 2731262959312803340Rat
619793Rapgef1Rap guanine nucleotide exchange factor 131289834913016234Rat
7582623Prrt1bproline rich transmembrane protein 1B31301985213028865Rat
7579002Golga2l1golgin A2 like 131303343113040798Rat
1359394Trub2TruB pseudouridine synthase family member 231304922013059836Rat
1304638Coq4coenzyme Q431306005413070502Rat
1307383Slc27a4solute carrier family 27 member 431307502213087943Rat
1306599Urm1ubiquitin related modifier 131310034013117064Rat
41238331LOC120101515uncharacterized LOC12010151531311797713119546Rat
1304778Cercamcerebral endothelial cell adhesion molecule31311815013155960Rat
4888575Mir219bmicroRNA 219b31311862313118722Rat
2325334Mir219-2microRNA 219-231311862613118721Rat
3229Odf2outer dense fiber of sperm tails 231316098113207223Rat
1307329Gle1GLE1 RNA export mediator31320931213237018Rat
621714Sptan1spectrin, alpha, non-erythrocytic 131324116413306047Rat
1359465Dync2i2dynein 2 intermediate chain 231330603913322121Rat
41368318SetSet nuclear proto-oncogene31333456413345598Rat
1305921Pkn3protein kinase N331335008213363572Rat
1306593Zdhhc12zinc finger DHHC-type palmitoyltransferase 1231336350413366383Rat
1310284Zer1zyg-11 related, cell cycle regulator31336968813397524Rat
1591937Tbc1d13TBC1 domain family, member 1331340894413425524Rat
1310763Endogendonuclease G31344911313451715Rat
1563514Spout1SPOUT domain containing methyltransferase 131345119113458918Rat
1306912Kyat1kynurenine aminotransferase 131345959813493308Rat
11422106LOC108350591glyceraldehyde-3-phosphate dehydrogenase pseudogene31349774513502170Rat
1311690Lrrc8aleucine rich repeat containing 8 VRAC subunit A31350957713537174Rat
1310377Phyhd1phytanoyl-CoA dioxygenase domain containing 131353567013553797Rat
41021698LOC120101891uncharacterized LOC12010189131353642513538891Rat
1310821Dolkdolichol kinase31355782613559864Rat
1306022Nup188nucleoporin 18831355991713616313Rat
1305886Sh3glb2SH3 domain-containing GRB2-like endophilin B231361693613631785Rat
1310887Miga2mitoguardin 231363623513658895Rat
1586630Rpl38l5ribosomal protein L38 like 531366296613663913Rat
1307447Dolpp1dolichyldiphosphatase 131366600013674312Rat
41403195LOC120102100U2 spliceosomal RNA31367251113672701Rat
1303031Cratcarnitine O-acetyltransferase31367568413689282Rat
1308354Ptpaprotein phosphatase 2 phosphatase activator31368974213720287Rat
1561058Ier5limmediate early response 5-like31374405613745647Rat
41136913LOC120101516uncharacterized LOC12010151631374721513754220Rat
2320952LOC100361008Cytochrome c oxidase subunit 5A, mitochondrial-like31380388713804503Rat
7629611LOC102550392uncharacterized LOC10255039231381381213823726Rat
41342810LOC120101517uncharacterized LOC12010151731394409213949236Rat
7576402LOC102554501uncharacterized LOC10255450131394938313953181Rat
1311084C3h9orf50similar to human chromosome 9 open reading frame 5031407667914087036Rat
1306582Ntmt1N-terminal Xaa-Pro-Lys N-methyltransferase 131409337414110565Rat
1308445Asb6ankyrin repeat and SOCS box-containing 631411062814115274Rat
1311471Prrx2paired related homeobox 231413257414168533Rat
62076Ptgesprostaglandin E synthase31417789214189236Rat
1308431Tor1btorsin family 1, member B31424318114249279Rat
628863Tor1atorsin family 1, member A31425066714257704Rat
1305178C3h9orf78similar to human chromosome 9 open reading frame 7831426426214272552Rat
1305621Usp20ubiquitin specific peptidase 2031427273714306409Rat
621350Fnbp1formin binding protein 131430906714424378Rat
41151319LOC120102117U12 minor spliceosomal RNA31434586014346010Rat
1305882Gpr107G protein-coupled receptor 10731443170414497623Rat
68417Ncs1neuronal calcium sensor 131452322014568829Rat
1585467Hmcn2hemicentin 231458835314738320Rat
2163Ass1argininosuccinate synthase 131474735514796909Rat
41110934LOC120102084small nucleolar RNA SNORA2631476836214768482Rat
1307004Fubp3far upstream element binding protein 331485552714904540Rat
1586401Prdm12PR/SET domain 1231492865114943341Rat
1306573Exosc2exosome component 231496293014973645Rat
1584969Abl1ABL proto-oncogene 1, non-receptor tyrosine kinase31497985315083065Rat
735020Qrfppyroglutamylated RFamide peptide31508804515088419Rat
1309097Fibcd1fibrinogen C domain containing 131509268215126371Rat
40980311LOC120101519uncharacterized LOC12010151931512691915130446Rat
1309399Lamc3laminin subunit gamma 331516522015226697Rat
1305081Aif1lallograft inflammatory factor 1-like31522947615254033Rat
1304977Nup214nucleoporin 21431525511115340568Rat
1566351Fam78afamily with sequence similarity 78, member A31535595815376330Rat
1305821Plpp7phospholipid phosphatase 7 (inactive)31538446115398820Rat
41053147LOC120101521uncharacterized LOC12010152131541798115422253Rat
1595906Prrc2bproline-rich coiled-coil 2B31543335715519105Rat
41368742Snord62asmall nucleolar RNA, C/D box 62A31550684715506931Rat
9258213LOC103691765uncharacterized LOC10369176531550848415521544Rat
41397579Snord62bsmall nucleolar RNA, C/D box 62B31551051515510599Rat
620078Pomt1protein-O-mannosyltransferase 131552071715538579Rat
1308313Uck1uridine-cytidine kinase 131553858015544465Rat
1559966Swi5SWI5 homologous recombination repair protein31557468715583760Rat
620282Golga2golgin A231558386215604279Rat
71096Dnm1dynamin 131560478215648654Rat
41286650LOC120102046U1 spliceosomal RNA31565059515650750Rat
1305336Ciz1CDKN1A interacting zinc finger protein 131565847915673762Rat
1561113Bblnbublin coiled coil protein31567457715677322Rat
69408Lcn2lipocalin 231568068815684033Rat
1310836Ptges2prostaglandin E synthase 231569050115697688Rat
41232171LOC120101523uncharacterized LOC12010152331569409015695381Rat
628666Slc25a25solute carrier family 25 member 2531570870215742195Rat
1597546Naif1nuclear apoptosis inducing factor 131574123915747672Rat
41092074LOC120101524mitochondrial import inner membrane translocase subunit Tim17-B-like31577667815777190Rat
1597535Eeig1estrogen-induced osteoclastogenesis regulator 131582244115854651Rat
2514Dpm2dolichyl-phosphate mannosyltransferase subunit 2, regulatory31585595215858867Rat
1597527Pip5kl1phosphatidylinositol-4-phosphate 5-kinase-like 131586049315869264Rat
1303005St6galnac4ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 431587223015885250Rat
1303196St6galnac6ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 631589427515907502Rat
2076Ak1adenylate kinase 131591243115923045Rat
1593188Engendoglin31593456615972618Rat
1587713Fpgsfolylpolyglutamate synthase31597280015993592Rat
1359638Cdk9cyclin-dependent kinase 931599646716001315Rat
1307287Sh2d3cSH2 domain containing 3C31601062216046491Rat
41245138Rnu6-899RNA, U6 small nuclear 89931602987916029985Rat
1359111Tor2atorsin family 2, member A31604859116053198Rat
2318922Ttc16tetratricopeptide repeat domain 1631605256716064598Rat
1310165Ptrh1peptidyl-tRNA hydrolase 1 homolog31606486716071098Rat
1560002Cfap157cilia and flagella associated protein 15731606652116073504Rat
3785Stxbp1syntaxin binding protein 131607672516138431Rat
1307018Niban2niban apoptosis regulator 231617467416224293Rat
1564403Lrsam1leucine rich repeat and sterile alpha motif containing 131622336716264261Rat
1565106Rpl12ribosomal protein L1231626426916266645Rat
41059769Snora65small nucleolar RNA, H/ACA box 6531626580116265930Rat
620611Slc2a8solute carrier family 2 member 831627491816284536Rat
1564019Garnl3GTPase activating Rap/RanGAP domain-like 331628871816432308Rat
41107518LOC120101525uncharacterized LOC12010152531631154516314634Rat
2319500Ralgps1Ral GEF with PH domain and SH3 binding motif 131643332316670276Rat
620004Angptl2angiopoietin-like 231651718516547024Rat
1596130Zbtb34zinc finger and BTB domain containing 3431670335516726082Rat
1310287Zbtb43zinc finger and BTB domain containing 4331674453516763854Rat
7578982LOC102550017uncharacterized LOC10255001731677835916781260Rat
41260489LOC120102022small nucleolar RNA SNORA4831685366616853809Rat
620843Lmx1bLIM homeobox transcription factor 1 beta31686219516940899Rat
9300457Rpl39l3ribosomal protein L39 like 331696991316970148Rat
1309709Mvb12bmultivesicular body subunit 12B31703400217192658Rat
41014645LOC120101526uncharacterized LOC12010152631724139317247946Rat
11425803LOC108350352uncharacterized LOC10835035231737963817415805Rat
1307198Pbx3PBX homeobox 331748869117682412Rat
9255683LOC103691768uncharacterized LOC10369176831762428617653427Rat
11375987LOC108350353uncharacterized LOC10835035331771249617715730Rat
1305363Mapkap1MAPK associated protein 131771581317918387Rat
6490845Rps7-ps1ribosomal protein S7, pseudogene 131774510017745785Rat
1307479Gapvd1GTPase activating protein and VPS9 domains 131796834518041888Rat
2843Hspa5heat shock protein family A (Hsp70) member 531805550718059969Rat
1310612RabepkRab9 effector protein with kelch motifs31806129918083191Rat
1310460Fbxw2F-box and WD repeat domain containing 231808885918114387Rat
9424697B3galt9beta-1,3-galactosyltransferase 931812162018124149Rat
1308434Psmd5proteasome 26S subunit, non-ATPase 531813371518151000Rat
1564854CutalcutA divalent cation tolerance homolog-like31815430018174957Rat
1310390Phf19PHD finger protein 1931817528118197289Rat
41148686Rnu6-1256RNA, U6 small nuclear 125631819866018198758Rat
1596290Traf1TNF receptor-associated factor 131822202418242163Rat
2237C5complement C531827069618361994Rat
1308742C5l1complement C5 like 131840171618420064Rat
1305317Cntrlcentriolin31842814718500362Rat
620881Rab14RAB14, member RAS oncogene family31850195318523253Rat
7626419LOC102554040uncharacterized LOC10255404031854880318551679Rat
1303089Gsngelsolin31858516618638404Rat
1305109Stomstomatin31864505818667343Rat
11415833Rps29-ps18ribosomal protein S29, pseudogene 1831865282818653581Rat
1565200Ggta1l1glycoprotein, alpha-galactosyltransferase 1-like 131868467618701674Rat
7519388LOC102548933uncharacterized LOC10254893331868483718704251Rat
41302246LOC120101528spermidine synthase-like31870954818710782Rat
15600294930402F06RiklRIKEN cDNA 4930402F06 gene like31871144718729464Rat
629476Ggta1glycoprotein alpha-galactosyltransferase 131873298518824916Rat
41223777LOC120101529uncharacterized LOC12010152931880970818826377Rat
41235057LOC120101530uncharacterized LOC12010153031883080318840164Rat
7519941LOC102549213uncharacterized LOC10254921331885924518864078Rat
41334896LOC120101531uncharacterized LOC12010153131885969018860308Rat
40939483LOC120101532uncharacterized LOC12010153231886873618875078Rat
1564343Rps16-ps8ribosomal protein S16, pseudogene 831889902818899541Rat
41255400LOC120101533uncharacterized LOC12010153331890657418915565Rat
621686Dab2ipDAB2 interacting protein31891529019086282Rat
1588742Ttll11tubulin tyrosine ligase like 1131910989119335077Rat
41317518LOC120101534uncharacterized LOC12010153431924467019265072Rat
11412302LOC108350358uncharacterized LOC10835035831936841019371814Rat
40930499LOC120101535uncharacterized LOC12010153531937116119375704Rat
1306283Ndufa8NADH:ubiquinone oxidoreductase subunit A831938606219402090Rat
1307739Morn5MORN repeat containing 531940222119430075Rat
1306174Lhx6LIM homeobox 631943243919456268Rat
1307411Rbm18RNA binding motif protein 1831946733319487171Rat
1305897Mrrfmitochondrial ribosome recycling factor31948712419543911Rat
41328151LOC120101536uncharacterized LOC12010153631956929119569873Rat
3439Ptgs1prostaglandin-endoperoxide synthase 131958401519605589Rat
1561766Btf3-ps8basic transcription factor 3, pseudogene 831962091619621457Rat
1332877Or1u2-ps1olfactory receptor family 1 subfamily U member 2, pseudogene 131964110519641968Rat
1334061Or1j8-ps1olfactory receptor family 1 subfamily J member 8, pseudogene 131966717919668113Rat
1332916Or1j13bolfactory receptor family 1 subfamily J member 13B31971224219713180Rat
1333442Or1j8bolfactory receptor family 1 subfamily J member 8B31976523019766168Rat
1589699Klf5-ps1Kruppel-like factor 5, pseudogene 131978734019790302Rat
1334157Or1j16bolfactory receptor family 1 subfamily J member 16B31980352919806493Rat
1333097Or1j22olfactory receptor family 1 subfamily J member 2231983877119839700Rat
1333418Or1j10olfactory receptor family 1 subfamily J member 1031987183619872759Rat
1333084Or1j15bolfactory receptor family 1 subfamily J member 15B31991073819911667Rat
1333467Or1j13olfactory receptor family 1 subfamily J member 1331994606319947001Rat
1333900Or1j14olfactory receptor family 1 subfamily J member 1432004046220041400Rat
1332955Or1j15olfactory receptor family 1 subfamily J member 1532006734920068272Rat
1334217Or1j16olfactory receptor family 1 subfamily J member 1632014515820146096Rat
1334184Or1j24-ps1olfactory receptor family 1 subfamily J member 24, pseudogene 132019140520192325Rat
1333812Or1j12bolfactory receptor family 1 subfamily J member 12B32021130520212240Rat
1332629Or1j12olfactory receptor family 1 subfamily J member 1232026967820270616Rat
1333536Or1j13colfactory receptor family 1 subfamily J member 13C32031516220316100Rat
1333882Or1j19olfactory receptor family 1 subfamily J member 1932033968420340625Rat
1333914Or1j21olfactory receptor family 1 subfamily J member 2132034653520352728Rat
1332682Or1j1olfactory receptor family 1 subfamily J member 132038357720384518Rat
1333868Or1v2-ps1olfactory receptor family 1 subfamily V member 2, pseudogene 132039800520398768Rat
1333082Or1j4olfactory receptor family 1 subfamily J member 432040964120410579Rat
621629Or1n1olfactory receptor family 1 subfamily N member 132041326220414197Rat
1333209Or1j20olfactory receptor family 1 subfamily J member 2032042412520425072Rat
1334305Or1n1bolfactory receptor family 1 subfamily N member 1B32044460420445539Rat
1333103Or1n2olfactory receptor family 1 subfamily N member 232045646420457417Rat
1333496Or1l8olfactory receptor family 1 subfamily L member 832047236220473294Rat
1334437Or1ak2olfactory receptor family 1 subfamily AK member 232048392120484868Rat
41347654LOC120102126U4 spliceosomal RNA32050396520504098Rat
1333656Or1q1olfactory receptor family 1 subfamily Q member 132050699520507921Rat
1333411Or12k5olfactory receptor family 12 subfamily K member 532051768220518674Rat
1332758Or12k7bolfactory receptor family 12 subfamily K member 7B32055178820552741Rat
1334389Or12k7olfactory receptor family 12 subfamily K member 732060688720607873Rat
1333742Or12k8olfactory receptor family 12 subfamily K member 832062253120623523Rat
1333333Or1b1olfactory receptor family 1 subfamily B member 132063997620640929Rat
1332825Or1l4bolfactory receptor family 1 subfamily L member 4B32069926620700189Rat
1332944Or1l4olfactory receptor family 1 subfamily L member 432076712920768064Rat
1333332Or1af1olfactory receptor family 1 subfamily AF member 132078454520785474Rat
41129592LOC120101432olfactory receptor 1G1-like32080765020808705Rat
1334355Olr431-psolfactory receptor pseudogene 43132081191620812126Rat
1584028Or7c74olfactory receptor family 7 subfamily C member 7432083661620837548Rat
1332729Olr433-psolfactory receptor pseudogene 43332084156320841791Rat
1333139Or5c1olfactory receptor family 5 subfamily C member 132086229720863280Rat
1584015Pdcl1-ps1phosducin-like 1, pseudogene 132087269120881151Rat
1589698Nme2-ps6NME/NM23 nucleoside diphosphate kinase 2, pseudogene 632088106320883655Rat
1588379Rrs1-ps10ribosome biogenesis regulator 1 homolog, pseudogene 1032093932120942374Rat
41003160Elob-ps11elongin B, pseudogene 1132098648820987742Rat
41209010Elob-ps7elongin B, pseudogene 732099050420992516Rat
1582869Elob-ps14elongin B, pseudogene 1432099505620995790Rat
41266536Elob-ps3elongin B, pseudogene 332100233621003559Rat
1590958LOC690876similar to transcription elongation factor B (SIII), polypeptide 232100647021007502Rat
1588382Elob-ps8elongin B, pseudogene 832101726421018340Rat
41101549Elob-ps13elongin B, pseudogene 1332102182521022305Rat
40987625Elob-ps15elongin B, pseudogene 1532102519421026182Rat
41185658Elob-ps5elongin B, pseudogene 532102914221030159Rat
6493667Dlg5l2discs large MAGUK scaffold protein 5 like 232106224721072153Rat
1591934Klf5-ps2Kruppel-like factor 5, pseudogene 232107191521073656Rat
1582840Rrs1-ps1ribosome biogenesis regulator 1 homolog, pseudogene 132108898921090611Rat
41001645LOC120101901uncharacterized LOC12010190132109599121099779Rat
621135Pdclphosducin like32111016521119763Rat
7654995Nme2-ps2NME/NM23 nucleoside diphosphate kinase 2, pseudogene 232111942321122807Rat
1304833Rc3h2ring finger and CCCH-type domains 232112153121186711Rat
41133334Snord90small nucleolar RNA, C/D box 9032116296821163078Rat
41083260Zbtb6l1zinc finger and BTB domain containing 6 like 132118503821192945Rat
1306007Zbtb6zinc finger and BTB domain containing 632118916021207561Rat
1308561Zbtb26zinc finger and BTB domain containing 2632119531921207925Rat
11425388LOC108350365uncharacterized LOC10835036532119941021205009Rat
1304691Rabgap1RAB GTPase activating protein 132120801221326013Rat
1586383Gpr21G protein-coupled receptor 2132127528921279008Rat
620673Strbpspermatid perinuclear RNA binding protein32132831021467753Rat
41374491U4l1U4 spliceosomal RNA like 132142035421420481Rat
1561137Rps16l1ribosomal protein S16 like 132149415521494684Rat
41026169LOC120101537uncharacterized LOC12010153732152771321534482Rat
41016805LOC120101903uncharacterized LOC12010190332154038321543108Rat
1309368Crb2crumbs cell polarity complex component 232154213821564876Rat
41337030LOC120101933U6 spliceosomal RNA32155103821551144Rat
40941630LOC120101945U6 spliceosomal RNA32155175421551860Rat
1307927Dennd1aDENN domain containing 1A32156474922052057Rat
71076Lhx2LIM homeobox 232211361922143909Rat
11473570Dpf3l1double PHD fingers 3 like 132221469422257038Rat
40939602LOC120101538uncharacterized LOC12010153832224525122257178Rat
727779Nek6NIMA-related kinase 632228426922356302Rat
621093Psmb7proteasome 20S subunit beta 732235777722417748Rat
1596103Alg11-ps3ALG11, alpha-1,2-mannosyltransferase, pseudogene 332242836922429945Rat
2318734Rps20-ps10ribosomal protein S20, pseudogene 1032243025822430776Rat
68350Nr5a1nuclear receptor subfamily 5, group A, member 132246478622486328Rat
1564740Nr6a1nuclear receptor subfamily 6, group A, member 132249510922683132Rat
2325335Mir181a2microRNA 181a-232261584522615961Rat
2325454Mir181b2microRNA 181b-232261694822617035Rat
41296457LOC120101539uncharacterized LOC12010153932261895022632367Rat
1311651Olfml2aolfactomedin-like 2A32268859022717917Rat
7749459Golga2l2golgin A2 like 232271624422731175Rat
41157828LOC120102092small nucleolar RNA SNORA7932273807222738216Rat
1562587Wdr38WD repeat domain 3832275015022753260Rat
1303007Rpl35ribosomal protein L3532275325522756217Rat
1308867Arpc5lactin related protein 2/3 complex, subunit 5-like32275871022767520Rat
1311305Golga1golgin A132276569022812637Rat
7707315Scail1suppressor of cancer cell invasion like 132281271922819111Rat
1594720Scaisuppressor of cancer cell invasion32281328322925337Rat
708460Ppp6cprotein phosphatase 6, catalytic subunit32292981622962123Rat
1589697Rpl10-ps2ribosomal protein L10, pseudogene 232303352923034161Rat
41241606LOC120102026small nucleolar RNA SNORA4832304743523047574Rat
7741314N4bp1-ps1Nedd4 binding protein 1, pseudogene 132315047223151651Rat
1589739Vdac2-ps3voltage-dependent anion channel 2, pseudogene 332321552623222603Rat
2323145Sp3-ps1Sp3 transcription factor, pseudogene 132360318123604872Rat
41256826LOC120101994U7 small nuclear RNA32362397123624033Rat
40992520LOC120101997U7 small nuclear RNA32362404923624108Rat
9093487LOC10369180540S ribosomal protein S14 pseudogene32371140923711911Rat
41337682LOC120102038small nucleolar RNA SNORA4832392516823925311Rat
2318320LOC10036236640S ribosomal protein S17-like32401982024020305Rat
11496785LOC10835055160S ribosomal protein L12 pseudogene32424981424250522Rat
41069797LOC120102003small nucleolar RNA SNORA7032455500324555138Rat
1561736Rpl10l3ribosomal protein L10A like 332455508024555585Rat
1306160Lrp1bLDL receptor related protein 1B32459430226715037Rat
41034676Actg1-ps7actin, gamma 1, pseudogene 732528326925290132Rat
41092566LOC120101541uncharacterized LOC12010154132689036826909301Rat
41393928LOC120102048small nucleolar RNA SNORA1732689649926896629Rat
41260220LOC120101542MLV-related proviral Env polyprotein-like32733382827335839Rat
71061Kynukynureninase32777864627929470Rat
1359304Arhgap15Rho GTPase activating protein 1532798936828592722Rat
41176684LOC120102081small nucleolar RNA SNORA4032830634528306467Rat
41066404LOC120102110U2 spliceosomal RNA32855995628560093Rat
1563393Gtdc1glycosyltransferase-like domain containing 132876664029161668Rat
41007407Rnu2-18RNA, U2 small nuclear 1832881327728813416Rat
11498418LOC108350367uncharacterized LOC10835036732887037328882513Rat
1307272Zeb2zinc finger E-box binding homeobox 232921458129344890Rat
9273023Zeb2-as1ZEB2 antisense RNA 132934307829345943Rat
7498952LOC102548671uncharacterized LOC10254867132943454929491656Rat
9075793LOC103690391uncharacterized LOC10369039132957970029583753Rat
11373432LOC108350369uncharacterized LOC10835036932962628029676672Rat
41353600LOC120101545uncharacterized LOC12010154532974202229786773Rat
7622113LOC102548934uncharacterized LOC10254893432999381829998722Rat
41041303LOC120102076small nucleolar RNA SNORA1733052038230520498Rat
2322483Traf7-ps2TNF receptor associated factor 7, pseudogene 233076880130770318Rat
41087157LOC120102072small nucleolar RNA SNORA1733081550330815603Rat
2323086Ddx18-ps2DEAD-box helicase 18, pseudogene 233120713731210520Rat
11429489LOC108350370uncharacterized LOC10835037033121664431228107Rat
9265290Elobl8elongin B like 833125526531255970Rat
41126518LOC120101546uncharacterized LOC12010154633134491731365067Rat
41040480LOC120102009small nucleolar RNA SNORA433136654831366647Rat
11383937LOC108350593uncharacterized LOC10835059333136701831374155Rat
41304536LOC120101992U7 small nuclear RNA33142960831429669Rat
41080470LOC120102080small nucleolar RNA SNORA4033152792831528053Rat
1590993Rpl37l4ribosomal protein L37 like 433209113732091463Rat
1334145Or6c247-ps1olfactory receptor family 6 subfamily C member 247, pseudogene 133210782932108276Rat
1589738Max-ps1MYC associated factor X, pseudogene 133252095032521403Rat
7597606R3hdm2-ps1R3H domain containing 2, pseudogene 133264742532683617Rat
11507559LOC108350372uncharacterized LOC10835037233297332732986885Rat
70911Acvr2aactivin A receptor type 2A33320496133292673Rat
735212Orc4origin recognition complex, subunit 433329084433334022Rat
1562961Mbd5methyl-CpG binding domain protein 533358885433738730Rat
41358771LOC120101434uncharacterized LOC12010143433378665333790312Rat
1307271Epc2enhancer of polycomb homolog 233386721933967908Rat
1308539Kif5ckinesin family member 5C33403208234185597Rat
7502848LOC102556679uncharacterized LOC10255667933413506434137136Rat
1562767Lypd6bLy6/Plaur domain containing 6B33419910134360770Rat
1303202Ns5atp4-ps3NS5A transactivated protein 4, pseudogene 333446571534466470Rat
1587119Lypd6Ly6/Plaur domain containing 633448742534632887Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 233455988934559961Rat
41239310LOC120101547fatty acid-binding protein 5-like33458594934586393Rat
1587102Hnrnpa1-ps20heterogeneous nuclear ribonucleoprotein A1, pseudogene 2033467336934674656Rat
1303272Mmadhcmetabolism of cobalamin associated D33470864934726554Rat
7691310LOC102555425uncharacterized LOC10255542533472651434736258Rat
41020350Cep19-ps1centrosomal protein 19, pseudogene 133489813134898840Rat
1359690Rnd3Rho family GTPase 333557192935589283Rat
1359393Tas2r134taste receptor, type 2, member 13433607765236078641Rat
41177880LOC120101491ubiquitin-40S ribosomal protein S27a-like33625497536261863Rat
41102312Rpl29-ps11ribosomal protein L29, pseudogene 1133631504736315697Rat
41165151Rpl28-ps9ribosomal protein L28, pseudogene 933636699136367397Rat
1306676Rbm43RNA binding motif protein 4333639443136404757Rat
4109660Cct8-ps2chaperonin containing Tcp1, subunit 8 (theta), pseudogene 233640919636410212Rat
41340043Cct8-ps3chaperonin containing Tcp1, subunit 8 (theta), pseudogene 333640952636410608Rat
1311721NmiN-myc (and STAT) interactor33641560736439716Rat
1588377Ldha-ps11lactate dehydrogenase A, pseudogene 1133646040936461527Rat
621359Tnfaip6TNF alpha induced protein 633650225036521652Rat
1562474Rif1replication timing regulatory factor 133655468936607961Rat
1311134Nebnebulin33661367736811618Rat
41372376Trnaa-agc59transfer RNA alanine (anticodon AGC) 5933664813836648210Rat
40942202LOC120101548uncharacterized LOC12010154833681641136831129Rat
1563584Myl6-ps6myosin light chain 6, pseudogene 633683138836831996Rat
41374742Cdk4-ps3cyclin-dependent kinase 4, pseudogene 333683868736839389Rat
621327Arl5aARF like GTPase 5A33687846136903362Rat
68385Cacnb4calcium voltage-gated channel auxiliary subunit beta 433690677137169165Rat
41067155LOC120102058small nucleolar RNA SNORA1733699430236994428Rat
1311497Stam2signal transducing adaptor molecule 233718614537234810Rat
40956857Trnas-aga35transfer RNA serine (anticodon AGA) 3533725558437255658Rat
40998676Ndufa2-ps1NADH:ubiquinone oxidoreductase subunit A2, pseudogene 133726176337262065Rat
1564306Dppa5al1developmental pluripotency associated 5A like 133731594237316483Rat
1560248Fmnl2formin-like 233734879137624746Rat
1311401Prpf40apre-mRNA processing factor 40 homolog A33762558537689859Rat
1564819Arl6ip6ARF like GTPase 6 interacting protein 633768999437720358Rat
40961022Ndufb1-ps2NADH:ubiquinone oxidoreductase subunit B1, pseudogene 233774469037745060Rat
40992840LOC120101962U6 spliceosomal RNA33776843537768539Rat
9428172Rps27a-ps7ribosomal protein S27a, pseudogene 733780272737803281Rat
9854659Rps27a-ps31ribosomal protein S27a, pseudogene 3133781397937814699Rat
2320490Micos10-ps2mitochondrial contact site and cristae organizing system subunit 10, pseudogene 233789684237897073Rat
1592097Hnrnpa1-ps7heterogeneous nuclear ribonucleoprotein A1, pseudogene 733801837538025764Rat
41117082LOC120102079small nucleolar RNA SNORA4033815393638154056Rat
11472940LOC108350373uncharacterized LOC10835037333825885938310242Rat
1595512Rprmreprimo, TP53 dependent G2 arrest mediator homolog33853958138540998Rat
41261021LOC120102131U6 spliceosomal RNA33858576838585874Rat
1595484Dkc1-ps2dyskerin pseudouridine synthase 1, pseudogene 233875218938753825Rat
735044Galnt13polypeptide N-acetylgalactosaminyltransferase 1333890369539560683Rat
40933123LOC120102077small nucleolar RNA SNORA1733902117039021277Rat
40977097LOC120102015small nucleolar RNA SNORA2/SNORA34 family33935167439351809Rat
41385392Mrps21-ps2mitochondrial ribosomal protein S21, pseudogene 233945908339459334Rat
1598165Hsp90ab1-ps23heat shock protein 90 alpha family class B member 1, pseudogene 2333953186339534065Rat
41256231LOC120102130U6 spliceosomal RNA33962913339629239Rat
11502263LOC108350374uncharacterized LOC10835037433993432739943737Rat
2958Kcnj3potassium inwardly-rectifying channel, subfamily J, member 333994489640106646Rat
2324286Ofd1-ps1Ofd1 centriole and centriolar satellite protein, pseudogene 134051788940522835Rat
7571468Gapdh-ps94Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9434070575640706713Rat
41270589LOC120101439uncharacterized LOC12010143934108407641091751Rat
41386871LOC1201020405S ribosomal RNA34127416641274284Rat
7624465LOC102552656uncharacterized LOC10255265634140397441420166Rat
41194913Rnu6-641RNA, U6 small nuclear 64134166480541664911Rat
3202Nr4a2nuclear receptor subfamily 4, group A, member 234168984741707036Rat
11471288Trnaa-cgc1transfer RNA alanine (anticodon CGC) 134176222741762298Rat
11377829Trnag-gcc1transfer RNA glycine (anticodon GCC) 134176254441762614Rat
2726Gpd2glycerol-3-phosphate dehydrogenase 234180055241937729Rat
1589694Gapdh-ps4Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 434196962741994850Rat
41263037LOC120101440uncharacterized LOC12010144034209700342112153Rat
6487629Zfp532-ps1zinc finger protein 532, pseudogene 134253559342539695Rat
620361Galnt5polypeptide N-acetylgalactosaminyltransferase 534257362242619881Rat
1308367Ermnermin34262816042633816Rat
1307990Cytipcytohesin 1 interacting protein34269805842774955Rat
7739841LOC102555754uncharacterized LOC10255575434273588542743489Rat
621789Acvr1cactivin A receptor type 1C34281549042892423Rat
620200Acvr1activin A receptor type 134297855843097892Rat
7554908LOC102555913uncharacterized LOC10255591334309817143101848Rat
1589693Gapdh-ps1glyceraldehyde-3-phosphate dehydrogenase, pseudogene 134321236343214261Rat
7671946LOC102556145uncharacterized LOC10255614534325161443259310Rat
1308188Upp2uridine phosphorylase 234327304843317417Rat
1561169Ccdc148coiled-coil domain containing 14834335688543631999Rat
41258230LOC120101550basic proline-rich protein-like34363026743632662Rat
1307840Pkp4plakophilin 434363236443835834Rat
41094759Rps14-ps3ribosomal protein S14, pseudogene 334387634543876799Rat
9190663LOC103691811dynein light chain roadblock-type 1 pseudogene34388464343885168Rat
1309610Dapl1death associated protein-like 134396099343980940Rat
41255996LOC120101955U6 spliceosomal RNA34404418944044292Rat
1302949Tanc1tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 134409938744335478Rat
1359296Wdsub1WD repeat, sterile alpha motif and U-box domain containing 134434041544370890Rat
11422397LOC108350580uncharacterized LOC10835058034437592444379414Rat
1309801Baz2bbromodomain adjacent to zinc finger domain, 2B34438428244681619Rat
7716591Arf4-ps1ADP-ribosylation factor 4, pseudogene 134462585044630139Rat
41047996Rnu6-22RNA, U6 small nuclear 2234466084744660953Rat
1308993Marchf7membrane associated ring-CH-type finger 734468022944720172Rat
41254171LOC120101908uncharacterized LOC12010190834470164544705078Rat
1307606Cd302CD302 molecule34472232444756045Rat
7489036Mir6216microRNA 621634475686144756938Rat
41332538LOC120101907uncharacterized LOC12010190734476111544773503Rat
1565962Ly75lymphocyte antigen 7534476470244852219Rat
1309777Pla2r1phospholipase A2 receptor 134488394345013793Rat
1303119Itgb6integrin subunit beta 634504629545170532Rat
41106923LOC120102123U4 spliceosomal RNA34513767345137755Rat
11446749LOC108350379uncharacterized LOC10835037934514411645149094Rat
1307777Rbms1RNA binding motif, single stranded interacting protein 134519582845420406Rat
1594533Psmd8-ps1proteasome 26S subunit, non-ATPase 8, pseudogene 134545612445469819Rat
11391174LOC108352564uncharacterized LOC10835256434566369645700941Rat
11401909LOC108352563uncharacterized LOC10835256334571752245752406Rat
41258419LOC120102049small nucleolar RNA SNORA1734579319345793322Rat
41124612LOC120101552uncharacterized LOC12010155234605991446066272Rat
628859TankTRAF family member-associated NFKB activator34611423046190270Rat
1594532Psmd14proteasome 26S subunit, non-ATPase 1434625433846347076Rat
9112027LOC103691831cation-dependent mannose-6-phosphate receptor pseudogene34627299746287040Rat
1591773Tbr1T-box brain transcription factor 134635023746368397Rat
41179729Rnu6-249RNA, U6 small nuclear 24934643474946434854Rat
41018897Rpl9-ps12ribosomal protein L9, pseudogene 1234647779646480228Rat
631407Slc4a10solute carrier family 4 member 1034666507646959088Rat
2515Dpp4dipeptidylpeptidase 434696223347043870Rat
41063319LOC120101554uncharacterized LOC12010155434707772347101724Rat
9363799LOC103691814uncharacterized LOC10369181434709350047096631Rat
2668Gcgglucagon34711391447122958Rat
621253Fapfibroblast activation protein, alpha34713882347207671Rat
1560496Ifih1interferon induced with helicase C domain 134722898047275403Rat
1306589Gcagrancalcin34729732047329913Rat
7530968Shoc2-ps1SHOC2 leucine-rich repeat scaffold protein, pseudogene 134730189447305302Rat
621112Kcnh7potassium voltage-gated channel subfamily H member 734732933847822122Rat
41098018LOC120102053small nucleolar RNA SNORA1734744325747443380Rat
11432617LOC108350383uncharacterized LOC10835038334782143847837682Rat
1308174Fignfidgetin, microtubule severing factor34863751048760772Rat
41217695LOC120101556uncharacterized LOC12010155634911070749143091Rat
1598030Gatd1-ps1glutamine amidotransferase class 1 domain containing 1, pseudogene 134926662949267219Rat
61869Grb14growth factor receptor bound protein 1434956821049683805Rat
41043121LOC120102125U4 spliceosomal RNA34966123749661394Rat
6492288LOC100911508uncharacterized LOC10091150834973789049746043Rat
1308954Cobll1cordon-bleu WH2 repeat protein-like 134975326049915168Rat
41113803LOC120101557uncharacterized LOC12010155734978621349795843Rat
41083239LOC120101991U7 small nuclear RNA34982031849820381Rat
41244250Rps11-ps10ribosomal protein S11, pseudogene 1034987113849907924Rat
1306005Slc38a11solute carrier family 38, member 1134998711950033615Rat
41403016LOC120102041small nucleolar RNA SNORA1735005387150054023Rat
41148402LOC120102035small nucleolar RNA SNORA4835009309950093233Rat
3635Scn3asodium voltage-gated channel alpha subunit 335014641150258119Rat
3632Scn2asodium voltage-gated channel alpha subunit 235030278150437504Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10260D3Rat5215631831145418311610Ratregion
10344D3Wox1212531188471211884828Ratregion
10625D3Mgh2012434711353147113655Ratregion
10678D3Mgh2118234187457841874764Ratregion
11260D3Mit820735030267950302886Ratregion
33862D3Mit924533035677330357018Ratregion
34252D3Mgh1913231922714719227279Ratregion
34336D3Mgh714333945463739454780Ratregion
34347D3Mgh1611931077870410778823Ratregion
36047D3Rat4614733684746636847613Ratregion
36167D3Rat5012232071409020714212Ratregion
36195D3Rat5115032146466021464822Ratregion
36354D3Mit2221031916237119162581Ratregion
37282D3Rat10317234539071445390751Ratregion
37282D3Rat10317234539071445390886Ratregion
37394D3Rat12322734480510444805331Ratregion
37510D3Rat10022533819223338192458Ratregion
37588D3Rat18917933871036538710544Ratregion
37010D3Rat4915732749462127494778Ratregion
36472D3Rat4413134418827844188411Ratregion
36657D3Rat5814531500542215005567Ratregion
34927D3Rat19017933238565332385832Ratregion
35054D3Rat5513831493762114937759Ratregion
35609D3Rat5318031737470317374883Ratregion
35617D3Rat5416831448914514489218Ratregion
35617D3Rat5416831448914514489306Ratregion
35745D3Rat4812032946323529463355Ratregion
38148D3Rat8218833323078833230976Ratregion
38346D3Rat9819933370334733703538Ratregion
38506D3Rat9619231487214914872341Ratregion
38552D3Rat8021133552842835528639Ratregion
38646D3Rat11719332901749029017683Ratregion
38652D3Rat11820033750766037507860Ratregion
40122D3Rat18615334365019843650351Ratregion
40362D3Rat18716234419364344193805Ratregion
38818D3Rat8311034539162145391731Ratregion
38882D3Rat8914733582336035823507Ratregion
38904D3Rat12219634234325842343454Ratregion
39034D3Rat11314134724284247242983Ratregion
39050D3Rat13021934723321147233430Ratregion
39072D3Rat12420031533793115338131Ratregion
39214D3Rat13117432143858421438758Ratregion
39494D3Rat18421534727045547270670Ratregion
41476D3Rat19315731424056014240717Ratregion
42636D3Rat28010631201661412016720Ratregion
42638D3Rat23222331452936514529588Ratregion
42639D3Rat23121131415870514158916Ratregion
42640D3Rat22922632006830720068533Ratregion
42641D3Rat27821631909133519091551Ratregion
42642D3Rat27614432285809622858240Ratregion
42643D3Rat27420334445632444456527Ratregion
42644D3Rat27314734659640246596549Ratregion
40854D3Rat19235731774916217749521Ratregion
40912D3Rat19124932134384121344079Ratregion
40968D3Rat19419931452938114529570Ratregion
41720D3Rat23019231957096319571155Ratregion
41780D3Rat22714734382736443827511Ratregion
41842D3Rat22823633855024938550487Ratregion
41908D3Rat27521534408420044084415Ratregion
44552D9Wox2113634175726141757340Ratregion
43611D3Got1121531687564716875862Ratregion
43613D3Got225631595255515952811Ratregion
43613D3Got225631595255515952876Ratregion
43614D3Got525231381369413813944Ratregion
43616D3Got913231696220116962333Ratregion
43618D3Got1012131741247617412594Ratregion
43620D3Got1720432213140522131609Ratregion
43622D3Got1424631925981119260057Ratregion
43623D3Got1511931934566519345784Ratregion
43624D3Got1622431966389619664120Ratregion
43625D3Got713231940719319407325Ratregion
43626D3Got817731916237919162556Ratregion
43627D3Got2320733584981235850019Ratregion
43628D3Got2512933496716834967297Ratregion
43629D3Got2727433540087735401151Ratregion
43630D3Got2420833530572735305935Ratregion
43631D3Got3014833835368538353831Ratregion
43631D3Got3014833835368538354081Ratregion
43631D3Got3014833835378538353831Ratregion
43632D3Got3122533790353937903764Ratregion
43634D3Got3318534776986247770067Ratregion
60800D3Wox215934916291149163071Ratregion
60801D3Wox310433117232031172424Ratregion
60385D3Got17521932419245524192674Ratregion
60386D3Got1829132794445927944750Ratregion
60388D3Got2026032354297723543237Ratregion
60389D3Got2112732775715227757279Ratregion
60390D3Got2213633410549734105633Ratregion
60391D3Got2615133362564633625797Ratregion
60392D3Got2819533298503532985232Ratregion
60393D3Got2920933568974835689957Ratregion
60395D3Got413631116773411167870Ratregion
69714D3Kyo214531524679615246941Ratregion
625799D3Got1322432118841821188642Ratregion
625833D3Got17616333853930338539466Ratregion
66449D3Mco1626132501365025013911Ratregion
66452D3Mco1820031740031017400510Ratregion
66504D3Mco3020031370836213708392Ratregion
66504D3Mco3020031370836213708597Ratregion
727995D3Chm6125033120619931206451Ratregion
727998D3Chm1122732920940029209628Ratregion
727999D3Chm1021434617489446175108Ratregion
728000D3Chm4223931419779214198031Ratregion
728000D3Chm4223931478220014782438Ratregion
728001D3Chm5829632859654628596842Ratregion
728002D3Chm7621533172899331729208Ratregion
728004D3Chm1215134627369846273849Ratregion
728005D3Chm4017431418970114189875Ratregion
728012D3Chm1522331740644217406665Ratregion
728013D3Chm2519233022278930222981Ratregion
728014D3Chm5120834170074041700952Ratregion
728019D3Chm823033167512931675359Ratregion
728022D3Chm2221134813530148135514Ratregion
728023D3Chm4317331419918514199358Ratregion
728024D3Chm5722332844167328441896Ratregion
728027D3Chm4117331419004514190218Ratregion
728028D3Chm722731760028217600509Ratregion
728029D3Chm7222034187454041874764Ratregion
728032D3Chm7923434383707443837310Ratregion
728033D3Chm5423534499193844992173Ratregion
728036D3Chm6020633142640331426609Ratregion
728037D3Chm5024834162056341620811Ratregion
728038D3Chm619131740552217405713Ratregion
66569D18Mco120534370636643706533Ratregion
67265D3Arb414231105160011051742Ratregion
67266D3Arb521031673546416735674Ratregion
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5086386AW52980016234991301149913173Ratregion
5081126RH14198018732164935121649538Ratregion
5086679BM38737420333329175533291958Ratregion
5086743AA81918019631654777116547967Ratregion
5086758Stxbp124531607759916077844Ratregion
5086809BM38676922031349126113491481Ratregion
5081763BE11809618231488801314888195Ratregion
5081919BE11875515033978326739783417Ratregion
5081931BE11878215634286076742860923Ratregion
5085722BQ20338018831843735618437544Ratregion
5085966BQ20361415035011133250111482Ratregion
5502922Prpf40a73033762925437629984Ratregion
5502973Nr4a222734169141541691642Ratregion
5507555D11S256910433544740035447504Ratregion
5503222UniSTS:23723717031978843219788601Ratregion
5503591UniSTS:46468411832246607822466196Ratregion
5504145UniSTS:25918053431805617118056705Ratregion
5503684FIGN__672359534864362048644215Ratregion
5504044px-43d224632447248124472727Ratregion
5504400PMC18813P221131216739812167609Ratregion
5504930Zik112331867235918672482Ratregion
5505374Cdk9167531599650315998178Ratregion
5505598UniSTS:48513094832048392020484868Ratregion
5505694UniSTS:48939595432055178720552741Ratregion
5505937Acvr2a14233320543933205581Ratregion
5506131UniSTS:4984326631861305518613121Ratregion
5506199Tor1a36831425070714251075Ratregion
5506539HSPA5_98879631805908418059880Ratregion
5506260D6S451168932221208922213778Ratregion
5506688REN3601322931374304213743271Ratregion
5506821G4613020231661423916614441Ratregion
5506690REN3600727431374436113744635Ratregion
5506692REN3600823231374415413744386Ratregion
5506694REN3600525931374508513745344Ratregion
5506696REN3600922531374395113744176Ratregion
5506700REN3614225131371372013713971Ratregion
5506702REN3634221531366565013665865Ratregion
5507105UniSTS:22456122031236667112366891Ratregion
5507053UniSTS:22426818631297226112972447Ratregion
5499725UniSTS:23434721431079189110792105Ratregion
5499727UniSTS:23436418231301537913015561Ratregion
5499733UniSTS:23436924931509268115092930Ratregion
5499735UniSTS:23438515632293100022931156Ratregion
5499741UniSTS:23439214733769062337690770Ratregion
5499687Acvr174034297980942980549Ratregion
5499731UniSTS:23436512431416829214168416Ratregion
5499587At-9B-134114132445043524451577Ratregion
5500987PMC109903P267434169161141692285Ratregion
5502082MARC_31635-31636:1045776384:135133328919633289547Ratregion
5499691Acvr2033328208633283655Ratregion
5502786DPP420034696411146964311Ratregion
5503122GOLGA1-197632280041922801395Ratregion
5503190ksks38827133328923733289508Ratregion
5500571RH13603320234519820545198407Ratregion
5500831G0709310731748921117489318Ratregion
5500625RH13634021131479660614796816Ratregion
5503422DXS808798631159508111596068Ratregion
5501341ECD2189623731374415413744391Ratregion
5501063PMC133732P146133410682134107282Ratregion
5501343ECD2205923231374361113743843Ratregion
5501746MARC_10305-10306:998934185:198132284629922847280Ratregion
5501904MARC_17149-17150:1028234160:136234459259544592957Ratregion
5501920MARC_17455-17456:1028295191:167831359033113591009Ratregion
5505540D2S171152732229830222299679Ratregion
5501942MARC_17905-17906:1025019334:1033328802833289310Ratregion
5502503RH125103031365519713656373Ratregion
5502485RH12506119531372007813720273Ratregion
5502271RH12423715431345126613451420Ratregion
5502567RH12536827331805916418059437Ratregion
11528616rs10698495631754241117542411Ratregion
11528617rs10675850031649064816490648Ratregion
11528618rs10698764431924168119241681Ratregion
Position Markers

Flank 1: (D3Mgh16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,778,704 - 10,778,823 (+)MAPPER
Rnor_6.036,000,748 - 6,000,866NCBI
Rnor_5.0311,361,699 - 11,361,817UniSTS
RGSC_v3.436,373,336 - 6,373,454UniSTS
RGSC_v3.436,373,335 - 6,373,454RGD
RGSC_v3.136,373,636 - 6,373,754RGD
Celera35,573,283 - 5,573,401UniSTS
RH 3.4 Map316.9RGD
RH 3.4 Map316.9UniSTS
Cytogenetic Map3p12UniSTS
Peak: (Scn2a)
Rat AssemblyChrPosition (strand)Source
GRCr8370,710,862 - 70,845,569 (+)NCBI
mRatBN7.2350,302,781 - 50,437,504 (+)NCBI
mRatBN7.2 Ensembl350,302,877 - 50,437,214 (+)Ensembl
UTH_Rnor_SHR_Utx353,646,466 - 53,788,492 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0362,230,075 - 62,372,108 (+)NCBI
UTH_Rnor_WKY_Bbb_1.0360,013,503 - 60,148,019 (+)NCBI
Rnor_6.0351,687,910 - 51,822,008 (+)NCBI
Rnor_6.0 Ensembl351,687,809 - 51,822,250 (+)Ensembl
Rnor_5.0358,322,640 - 58,456,658 (+)NCBI
RGSC_v3.4347,588,413 - 47,722,800 (+)NCBI
RGSC_v3.1347,484,784 - 47,619,172 (+)NCBI
Celera349,896,043 - 50,030,402 (+)NCBI
RH 3.4 Map3613.5RGD
Cytogenetic Map3q21NCBI
Flank 2: (D3Mit8)
Rat AssemblyChrPosition (strand)Source
GRCr8370,710,756 - 70,710,963 (+)Marker Load Pipeline
mRatBN7.2350,302,679 - 50,302,886 (+)MAPPER
Rnor_6.0351,687,711 - 51,687,917NCBI
Rnor_5.0358,322,441 - 58,322,647UniSTS
RGSC_v3.4347,588,214 - 47,588,420UniSTS
RGSC_v3.1347,484,585 - 47,484,792RGD
Celera349,895,844 - 49,896,050UniSTS
RH 3.4 Map3615.3UniSTS
RH 3.4 Map3615.3RGD
SHRSP x BN Map335.0198UniSTS
SHRSP x BN Map335.0198RGD
FHH x ACI Map336.02RGD
Cytogenetic Map3q24UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
11528620Bss113Bone structure and strength QTL 1139.752e-10femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)31649064819241681Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene BpQTLcluster4

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details cluster of 3 blood pressure QTL, for (SS x BN)F2 cross LOD=3(delta_hs_m_is_MAP), (LOD=2.575(deltaSBP) =2.86(deltaMAP) 68932