Eae13 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Eae13 (Experimental allergic encephalomyelitis QTL 13) Rattus norvegicus

Symbol: Eae13
Name: Experimental allergic encephalomyelitis QTL 13
RGD ID: 70169
Previously known as: Experimental Autoimmune (allergic) Encephalomyelitis QTL 13
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis incidence/prevalence measurement   (CMO:0001046)    
LOD Score: Not Available
P Value: 0.032
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,139,202 - 36,638,073RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01227,190,240 - 42,196,641RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01229,163,190 - 44,046,371RGDRnor5.0
RGSC_v3.41225,367,251 - 37,906,389RGDRGSC3.4
RGSC_v3.11225,230,561 - 37,769,778RGD
Cross Type: F2
Strains Crossed: ACI/N DA 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
demyelination  (QTM)
paresis  (QTM)
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
DA  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Linkage analysis of myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis in the rat identifies a locus controlling demyelination on chromosome 18. Dahlman I, etal., Hum Mol Genet 1999 Nov;8(12):2183-90.
2. QTL Data Transfer QTL data import from the RatMap database

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2323959Auts2activator of transcription and developmental regulator AUTS2122410418725194123Rat
40964822LOC120095842uncharacterized LOC120095842122496547324968048Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122532323025781897Rat
7684404LOC102550645uncharacterized LOC102550645122580013725805997Rat
1305843Caln1calneuron 1122581174326303670Rat
41391291Trnas-aga21transfer RNA serine (anticodon AGA) 21122614549226145564Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122633202026418286Rat
41132218Ifitm1-ps2interferon induced transmembrane protein 1, pseudogene 2122639569326395896Rat
1311043SbdsSbds, ribosome maturation factor122642041026429650Rat
1303319Tmem248transmembrane protein 248122643077526457105Rat
41387608Trnal-aag19transfer RNA leucine (anticodon AAG) 19122645849526458569Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122645919026503790Rat
1582914Kctd7potassium channel tetramerization domain containing 7122652096926532327Rat
1308473Tpst1tyrosylprotein sulfotransferase 1122654453626605706Rat
620753CrcpCGRP receptor component122662396826659756Rat
619974Aslargininosuccinate lyase122665966426677136Rat
41266323LOC120096116small nucleolar RNA SNORA17122668094826681081Rat
41387478Trnat-agu12transfer RNA threonine (anticodon AGU) 12122668978826689862Rat
1598198Rps9-ps15ribosomal protein S9, pseudogene 15122669235326698674Rat
41014265LOC120096125small nucleolar RNA SNORA81122669321226693392Rat
41161287LOC120096127small nucleolar RNA SNORA81122669615026696237Rat
2772Gusbglucuronidase, beta122670118826714718Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1122671795926768193Rat
41114360Trnaa-agc84transfer RNA alanine (anticodon AGC) 84122676349126763563Rat
1560258Nupr2nuclear protein 2, transcriptional regulator122680012326803228Rat
1559988Zbed5zinc finger BED-type containing 5122680765226813706Rat
7646482LOC102555557MLV-related proviral Env polyprotein-like122682069126822694Rat
6496638Chchd2coiled-coil-helix-coiled-coil-helix domain containing 2122682873826834762Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1122683882226854547Rat
1563253Sumf2sulfatase modifying factor 2122685356126871835Rat
40968761LOC120095933uncharacterized LOC120095933122686188326865773Rat
1304763Cct6achaperonin containing TCP1 subunit 6A122687273626883125Rat
41308945LOC120096108small nucleolar RNA SNORA15122687576126875891Rat
41347348Snora22csmall nucleolar RNA, H/ACA box 22C122688078826880922Rat
1308764Psphphosphoserine phosphatase122688252426905084Rat
1566421Nipsnap2nipsnap homolog 2122690606826944201Rat
40971147LOC120096123small nucleolar RNA SNORA76122692392026924065Rat
1307650Mrps17mitochondrial ribosomal protein S17122694853526951828Rat
1596186Septin14septin 14122697528327005588Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene122702189927022580Rat
2324824Zfp11zinc finger protein 11122702806727040846Rat
1311541Mmp17matrix metallopeptidase 17122707439827099317Rat
41053934LOC120095935uncharacterized LOC120095935122707716627079043Rat
1305004Sfswapsplicing factor SWAP122710960727179941Rat
7689144LOC102555340uncharacterized LOC102555340122731604127324144Rat
1594795Adgrd1adhesion G protein-coupled receptor D1122748890827603714Rat
40947512LOC120095936uncharacterized LOC120095936122761394627623220Rat
41096920LOC120095937uncharacterized LOC120095937122763709427645516Rat
620367RanRAN, member RAS oncogene family122767404927678598Rat
2558Stx2syntaxin 2122767874427714751Rat
708533Rimbp2RIMS binding protein 2122774761527946256Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1122794974327970645Rat
11518793LOC108352441uncharacterized LOC108352441122797074527974390Rat
1583825Fzd10frizzled class receptor 10122809837128101566Rat
11406627Rps20-ps3ribosomal protein S20, pseudogene 3122814558828146353Rat
41145714LOC120095942uncharacterized LOC120095942122824438928263727Rat
735062Tmem132dtransmembrane protein 132D122827003928917324Rat
40950631LOC120095943uncharacterized LOC120095943122830924128329042Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1122897598429049707Rat
708469Slc15a4solute carrier family 15 member 4122904863429082480Rat
1583824Tmem132ctransmembrane protein 132C122911521329437900Rat
11472079LOC108352443uncharacterized LOC108352443122914059329146192Rat
41181629Tmem254-ps1transmembrane protein 254, pseudogene 1122939753429414987Rat
41348602LOC120095946uncharacterized LOC120095946122946757229469165Rat
41154964LOC120096083U2 spliceosomal RNA122946950029469687Rat
1559821Myl6l2myosin light chain 6 like 2122948809129488746Rat
41083776LOC120095947uncharacterized LOC120095947122950898329528608Rat
9386528Rpl7-ps7ribosomal protein L7, pseudogene 7122955463029556108Rat
9188281LOC103691337uncharacterized LOC103691337122964621429652464Rat
41351787LOC120095949uncharacterized LOC120095949122973060929736279Rat
41235196LOC120095951uncharacterized LOC120095951122986393629869460Rat
41366922LOC120095952uncharacterized LOC120095952122988752429899402Rat
11363226LOC108352445uncharacterized LOC108352445122995068830009315Rat
2324513Mrpl23-ps1mitochondrial ribosomal protein L23, pseudogene 1123012462230125050Rat
7668786LOC102549552uncharacterized LOC102549552123014630830148665Rat
41213846LOC120095956uncharacterized LOC120095956123014922730154629Rat
11405284LOC108352488uncharacterized LOC108352488123018629430194578Rat
1592278Frg1-ps1FSHD region gene 1, pseudogene 1123026902130269933Rat
11493793LOC108352502uncharacterized LOC108352502123038801030409963Rat
40974416LOC120095960uncharacterized LOC120095960123068444330713892Rat
1566191Tmem132btransmembrane protein 132B123082983131093841Rat
41202940LOC120095961uncharacterized LOC120095961123099435430996878Rat
708522Aacsacetoacetyl-CoA synthetase123111309831156411Rat
1561711Bri3bpBri3 binding protein123117674231188563Rat
1306837Dhx37DEAH-box helicase 37123119478231214890Rat
11517466Trnaa-ugc3transfer RNA alanine (anticodon UGC) 3123122046331220534Rat
11440418Trnad-guc4transfer RNA aspartic acid (anticodon GUC) 4123122106331221134Rat
11367381Trnaf-gaa4transfer RNA phenylalanine (anticodon GAA) 4123122392631223998Rat
11425977Trnad-guc5transfer RNA aspartic acid (anticodon GUC) 5123122438131224452Rat
11373727Trnaa-ugc4transfer RNA alanine (anticodon UGC) 4123122569831225769Rat
621244Ubcubiquitin C123123914931243924Rat
2302Scarb1scavenger receptor class B, member 1123129614331362649Rat
41213561LOC120095963uncharacterized LOC120095963123136729531370732Rat
1310293Ncor2nuclear receptor co-repressor 2123146641831628319Rat
41017092LOC120095965uncharacterized LOC120095965123152405131528132Rat
1588777Rflnarefilin A123163336031642313Rat
7677226Zfp664zinc finger protein 664123176779231796038Rat
1561886Rpl27l5ribosomal protein L27 like 5123177986031780438Rat
1601131Ccdc92coiled-coil domain containing 92123179610231823333Rat
619988Dnah10dynein, axonemal, heavy chain 10123182345131946857Rat
9133337LOC103691347eukaryotic translation initiation factor 1 pseudogene123191454131914883Rat
41097782LOC120095966uncharacterized LOC120095966123194682131962475Rat
621006Atp6v0a2ATPase H+ transporting V0 subunit a2123194722031979875Rat
1591895Tctn2tectonic family member 2123198244032007242Rat
41257986Trnaa-agc44transfer RNA alanine (anticodon AGC) 44123199897931999059Rat
40970512Timm23-ps1translocase of inner mitochondrial membrane 23, pseudogene 1123200749732008787Rat
1305494Gtf2h3general transcription factor IIH subunit 3123200901032025484Rat
620819Eif2b1eukaryotic translation initiation factor 2B subunit alpha123202559332033848Rat
2324094Ddx55DEAD-box helicase 55123203446232050218Rat
69243Tmed2transmembrane p24 trafficking protein 2123205254232061628Rat
1307973Rilpl1Rab interacting lysosomal protein-like 1123207187032109687Rat
1310724Snrnp35small nuclear ribonucleoprotein U11/U12 subunit 35123211203232119829Rat
1303140Rilpl2Rab interacting lysosomal protein-like 2123212590832137426Rat
1587560Kmt5alysine methyltransferase 5A123213935332167777Rat
1310005Sbno1strawberry notch homolog 1123217517632234200Rat
1308664Cdk2ap1cyclin-dependent kinase 2 associated protein 1123224975232258483Rat
1563482Mtrfrmitochondrial translation release factor in rescue123226156932275258Rat
1598368Mphosph9M-phase phosphoprotein 9123227544932346097Rat
1310867Pitpnm2phosphatidylinositol transfer protein, membrane-associated 2123234745532479103Rat
1307657Arl6ip4ADP-ribosylation factor like GTPase 6 interacting protein 4123247962332481768Rat
1310594Ogfod22-oxoglutarate and iron-dependent oxygenase domain containing 2123248238632485688Rat
41316137LOC120096094U6 spliceosomal RNA123249059432490697Rat
620254Abcb9ATP binding cassette subfamily B member 9123249921332531932Rat
7543130LOC102552690uncharacterized LOC102552690123253546632560005Rat
1304576Vps37bVPS37B subunit of ESCRT-I123256004732589015Rat
621615Hip1rhuntingtin interacting protein 1 related123259016432618841Rat
1586391Ccdc62coiled-coil domain containing 62123262317032659912Rat
1584200Denrdensity regulated reinitiation and release factor123266251232685283Rat
1586364Hcar1hydroxycarboxylic acid receptor 1123271068032713934Rat
727952Hcar2hydroxycarboxylic acid receptor 2123272625232728238Rat
1307905Kntc1kinetochore associated 1123276902032839617Rat
1564882Rsrc2arginine and serine rich coiled-coil 2123283984032859820Rat
1309774Zcchc8zinc finger CCHC-type containing 8123286917032892707Rat
2323644LOC100359550protein S100-A11-like123290539632905803Rat
67404Clip1CAP-GLY domain containing linker protein 1123291093233017891Rat
41062965LOC120095846uncharacterized LOC120095846123296019532960798Rat
620643Vps33aVPS33A core subunit of CORVET and HOPS complexes123302459633051399Rat
1310885Diablodiablo, IAP-binding mitochondrial protein123305578433070401Rat
1309612B3gnt4UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4123307022133073904Rat
1561461Lrrc43leucine rich repeat containing 43123307414933092257Rat
1585183Il31interleukin 31123309510833105026Rat
1560774MlxipMLX interacting protein123312852433192300Rat
40933635LOC120096088U4 spliceosomal RNA123318341633183497Rat
1585128Bcl7aBAF chromatin remodeling complex subunit BCL7A123321197833243903Rat
41176598LOC120095967uncharacterized LOC120095967123324397233272229Rat
1564948Cfap251cilia and flagella associated protein 251123326162233337028Rat
41115357LOC120095968uncharacterized LOC120095968123332778933331332Rat
621110Psmd9proteasome 26S subunit, non-ATPase 9123333718233357468Rat
7586771LOC102547495uncharacterized LOC102547495123337397433381533Rat
61974Hpd4-hydroxyphenylpyruvate dioxygenase123338139733392750Rat
2323325Setd1bSET domain containing 1B, histone lysine methyltransferase123339596333421671Rat
1584038Rhofras homolog family member F, filopodia associated123342237533446689Rat
1584031Tmem120btransmembrane protein 120B123344744133487257Rat
1583094Rpl32-ps9ribosomal protein L32, pseudogene 9123349625333497041Rat
1583091Morn3MORN repeat containing 3123350565433529918Rat
1311873Orai1ORAI calcium release-activated calcium modulator 1123353315133548361Rat
7710500LOC102546488uncharacterized LOC102546488123354839733557605Rat
7734862Lraplocus regulating alcohol preference123356248233574339Rat
1310217Kdm2blysine demethylase 2B123356653033701366Rat
628636Rnf34ring finger protein 34123370365533724606Rat
40965160LOC120095970uncharacterized LOC120095970123372632133734720Rat
1306125Anapc5anaphase-promoting complex subunit 5123374870933781709Rat
620092Camkk2calcium/calmodulin-dependent protein kinase kinase 2123379102333845000Rat
41129989LOC120096090U4 spliceosomal RNA123381990433820064Rat
41132992LOC120095972uncharacterized LOC120095972123382624933828687Rat
62073P2rx4purinergic receptor P2X 4123384460933862265Rat
1598196Rpl32-ps11ribosomal protein L32, pseudogene 11123387057333873601Rat
3241P2rx7purinergic receptor P2X 7123388970933934168Rat
727862Ift81intraflagellar transport 81123395774434037164Rat
2174Atp2a2ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2123407271034122142Rat
1311927Anapc7anaphase promoting complex subunit 7123413121434160819Rat
2324823Rpl38-ps4ribosomal protein L38, pseudogene 4123414722234147659Rat
1311985Arpc3actin related protein 2/3 complex, subunit 3123417278034186651Rat
11445374LOC108352447uncharacterized LOC108352447123417499234179566Rat
41013557LOC120096106small nucleolar RNA SNORA67123418204634182188Rat
1303034Gpn3GPN-loop GTPase 3123418928534198251Rat
1310861Fam216afamily with sequence similarity 216, member A123419852634207673Rat
1308332Vps29VPS29 retromer complex component123420891134217977Rat
1308223Rad9bRAD9 checkpoint clamp component B123421786834248380Rat
1310383Pptc7protein phosphatase targeting COQ7123424996334288339Rat
11517723LOC108352448uncharacterized LOC108352448123426385534267760Rat
1566266Tctn1tectonic family member 1123430979534347190Rat
1310788Hvcn1hydrogen voltage-gated channel 1123434167334370010Rat
3377Ppp1ccprotein phosphatase 1 catalytic subunit gamma123438307234400553Rat
41376041LOC120095977uncharacterized LOC120095977123440810134424345Rat
1562334Ccdc63coiled-coil domain containing 63123442438834453080Rat
41142854LOC1200960785S ribosomal RNA123444480334444920Rat
1564245Myl2myosin light chain 2123445422334468554Rat
41282935LOC120095979uncharacterized LOC120095979123450251234507096Rat
1305967Cux2cut-like homeobox 2123450772334707581Rat
41239638LOC120095978uncharacterized LOC120095978123461097434614202Rat
1310656Pheta1PH domain containing endocytic trafficking adaptor 1123471183134717601Rat
68411Sh2b3SH2B adaptor protein 3123473193434753617Rat
1306637Atxn2ataxin 2123475413234851175Rat
41120407Fbxo22-ps1F-box protein 22, pseudogene 1123479768734808256Rat
1586551BrapBRCA1 associated protein123487453334901030Rat
1310159Acad10acyl-CoA dehydrogenase family, member 10123490121134943973Rat
69219Aldh2aldehyde dehydrogenase 2 family member123494954934982527Rat
1564113Mapkapk5MAPK activated protein kinase 5123499352035013059Rat
621467Adam1aADAM metallopeptidase domain 1a123501743335020300Rat
1596066Tmem116transmembrane protein 116123502191235089409Rat
2322512Adam1ba disintegrin and metallopeptidase domain 1b123503716135040574Rat
619781Erp29endoplasmic reticulum protein 29123508969835095952Rat
41049657LOC120095847uncharacterized LOC120095847123508986335094145Rat
1305685Naa25N(alpha)-acetyltransferase 25, NatB auxiliary subunit123509825635150498Rat
2320799LOC10036456140S ribosomal protein S27-like123513904935139517Rat
6500917LOC10090991140S ribosomal protein S20-like123515593435156460Rat
620171Trafd1TRAF type zinc finger domain containing 1123516560635179525Rat
1309762Hectd4HECT domain E3 ubiquitin protein ligase 4123518216535330935Rat
619826Rpl6ribosomal protein L6123534749335352011Rat
41368808LOC120096111small nucleolar RNA SNORA42/SNORA80 family123535131235351445Rat
3447Ptpn11protein tyrosine phosphatase, non-receptor type 11123536543635424925Rat
620073Rph3arabphilin 3A123554238935618901Rat
1359379Oas1i2 ' -5 ' oligoadenylate synthetase 1I123562456635636608Rat
1310349Oas1d2'-5' oligoadenylate synthetase 1D123564858335658037Rat
621760Oas1a2'-5' oligoadenylate synthetase 1A123566979835680505Rat
1359732Oas1h2 ' -5 ' oligoadenylate synthetase 1H123568286235695717Rat
1359647Oas1f2 ' -5 ' oligoadenylate synthetase 1F123569702435706617Rat
708393Oas1b2-5 oligoadenylate synthetase 1B123572456135735271Rat
1359611Oas1e2'-5' oligoadenylate synthetase 1E123575035935759304Rat
1359279Oas1k2 ' -5 ' oligoadenylate synthetase 1K123576248335771710Rat
1359319Oas32'-5'-oligoadenylate synthetase 3123577902835802781Rat
1359697Oas22'-5' oligoadenylate synthetase 2123580282435830778Rat
1585380Dtx1deltex E3 ubiquitin ligase 1123584964735880835Rat
1311820Rasal1RAS protein activator like 1123588126935913727Rat
2325045Ndufa1-ps2NADH:ubiquinone oxidoreductase subunit A1, pseudogene 2123592133435921801Rat
1561303Cfap73cilia and flagella associated protein 73123592889235935664Rat
1562539Ddx54DEAD-box helicase 54123593471335949956Rat
1306772Rita1RBPJ interacting and tubulin associated 1123595009035953960Rat
1560757IqcdIQ motif containing D123595552235972420Rat
708494Tpcn1two pore segment channel 1123597281336029632Rat
41057520LOC120095848uncharacterized LOC120095848123597663135983611Rat
1565818Slc8b1solute carrier family 8 member B1123602975936053087Rat
708461Plbd2phospholipase B domain containing 2123606280236081984Rat
67376Sdsserine dehydratase123608322636090540Rat
1309192Sdslserine dehydratase-like123609969336109914Rat
71079Lhx5LIM homeobox 5123612618636134625Rat
41331926LOC120095980uncharacterized LOC120095980123614450336146878Rat
1308928Rbm19RNA binding motif protein 19123636577536451033Rat
41089695LOC1200960195S ribosomal RNA123648270236482820Rat
11380654LOC108352451uncharacterized LOC108352451123659268436623169Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10125DXMgh7230123381916733819400Ratregion
33955D1Mit22124123140994231410080Ratregion
34070D12Mgh7138123569808835698226Ratregion
34246D12Mgh3118122423477724234895Ratregion
34729D12Mgh5132122806443328064557Ratregion
11281D12Wox15123609153336091690Ratregion
11282D12Arb7340123609137936091727Ratregion
36025D12Rat23154122413905724139202Ratregion
36101D12Rat15152122830212328302290Ratregion
36119D12Rat94265122905763229057901Ratregion
36125D12Rat14185122862266528622828Ratregion
37334D12Rat46142123039512130395279Ratregion
37346D12Rat27205122481210124812308Ratregion
37366D12Rat54115123579702135797136Ratregion
35433D12Rat17149123082724630827399Ratregion
36805D12Rat13170122482568624825856Ratregion
37830D12Rat36200123210317432103380Ratregion
36490D12Rat18161123470242634702587Ratregion
36671D12Rat19164123663807336638233Ratregion
36755D12Rat11165122495666924956834Ratregion
36795D12Rat24174123237617132376345Ratregion
35126D12Rat16170123042710330427275Ratregion
39626D12Rat75215122649713826497355Ratregion
39844D12Rat76109122830650928306601Ratregion
38084D12Rat96214123165732831657530Ratregion
38108D12Rat50244123395926833959512Ratregion
40454D12Rat100133123445246134452594Ratregion
40668D12Rat78216123088000030880206Ratregion
38404D12Rat45248122515746025157706Ratregion
38736D12Rat48201123615449136154692Ratregion
40112D12Rat84167123491883334919000Ratregion
40214D12Rat83158122663672426636867Ratregion
39060D12Rat30201123297403632974238Ratregion
39332D12Rat52181123531231335312458Ratregion
39446D12Rat99231122573546425735691Ratregion
41962D12Arb6290123568255935682913Ratregion
41962D12Arb6290123568255935682913Ratregion
41156D12Rat79221123508839935088624Ratregion
41440D12Rat74137122492508824925229Ratregion
42966D12Rat95203122964763529647846Ratregion
42967D12Rat106206123039001530390217Ratregion
42974D12Rat110202123663771836637922Ratregion
42379D12Rat111218123627661136276819Ratregion
40766D12Rat77100123026526230265360Ratregion
41626D12Rat93132122860752628607632Ratregion
41688D12Rat97115123613270336132816Ratregion
41786D12Rat101106123481880234818908Ratregion
41826D12Rat107223123213485232135053Ratregion
44997D12Got78173123356343833563611Ratregion
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5503072Sbds161122642055326421639Ratregion
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5505919Mmp1795122708836427088459Ratregion
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5506221Dtx10123587877635879086Ratregion
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5506729G44856274123428446934284743Ratregion
5499633MARC_5817-5818:991939742:3300122948832129488621Ratregion
5499605MARC_2373-2374:991932707:1334123475445034755580Ratregion
5499837UniSTS:234929717123285697132857688Ratregion
5502733RSRC2168123285696632857134Ratregion
5503095ASL204122667516726675631Ratregion
5500847G15902192123411886734119059Ratregion
5500408GDB:45513084123338655033386634Ratregion
5503644UniSTS:4654521480123587852035880000Ratregion
5501922MARC_17487-17488:1030377680:10123478863334790159Ratregion
5502313RH1244050123339714833397359Ratregion
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Position Markers

Flank 1: (D12Rat19)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21236,638,073 - 36,638,233 (-)MAPPER
Rnor_6.01242,196,641 - 42,196,800NCBI
Rnor_5.01244,046,371 - 44,046,530UniSTS
RGSC_v3.41237,906,389 - 37,906,549RGD
RGSC_v3.41237,906,390 - 37,906,549UniSTS
RGSC_v3.11237,769,778 - 37,769,937RGD
Celera1238,312,863 - 38,313,022UniSTS
RH 3.4 Map12624.1UniSTS
RH 3.4 Map12624.1RGD
RH 2.0 Map12461.4RGD
SHRSP x BN Map1244.3699RGD
FHH x ACI Map1235.6899RGD
Peak: (D12Rat18)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21234,702,426 - 34,702,587 (+)MAPPER
Rnor_6.01240,215,912 - 40,216,072NCBI
Rnor_5.01242,086,869 - 42,087,029UniSTS
RGSC_v3.41235,907,119 - 35,907,279UniSTS
RGSC_v3.41235,907,118 - 35,907,279RGD
RGSC_v3.11235,770,507 - 35,770,667RGD
Celera1236,367,985 - 36,368,141UniSTS
RH 3.4 Map12618.7RGD
RH 3.4 Map12618.7UniSTS
RH 2.0 Map12465.7RGD
FHH x ACI Map1235.52RGD
Cytogenetic Map12q16UniSTS
Flank 2: (D12Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21224,139,057 - 24,139,202 (+)MAPPER
Rnor_6.01227,190,096 - 27,190,240NCBI
Rnor_5.01229,163,046 - 29,163,190UniSTS
RGSC_v3.41225,367,106 - 25,367,251RGD
RGSC_v3.41225,367,107 - 25,367,251UniSTS
RGSC_v3.11225,230,197 - 25,230,561RGD
Celera1225,875,595 - 25,875,739UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1211.22RGD
Cytogenetic Map12q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Eae13


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Eae13  Experimental allergic encephalomyelitis QTL 13    Experimental Autoimmune (allergic) Encephalomyelitis QTL 13  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference