Eae13 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Eae13 (Experimental allergic encephalomyelitis QTL 13) Rattus norvegicus

Symbol: Eae13
Name: Experimental allergic encephalomyelitis QTL 13
RGD ID: 70169
Also known as: Experimental Autoimmune (allergic) Encephalomyelitis QTL 13
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis incidence/prevalence measurement   (CMO:0001046)    
LOD Score: Not Available
P Value: 0.032
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01227,190,240 - 42,196,641RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01229,163,190 - 44,046,371RGDRnor5.0
RGSC_v3.41225,367,251 - 37,906,389RGDRGSC3.4
RGSC_v3.11225,230,561 - 37,769,778RGD
Cross Type: F2
Strains Crossed: ACI/N DA 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
demyelination  (QTM)
paresis  (QTM)
Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
DA  (IEA)

References

References - curated
1. Dahlman I, etal., Hum Mol Genet 1999 Nov;8(12):2183-90.
2. QTL data import from the RatMap database

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3447Ptpn11protein tyrosine phosphatase, non-receptor type 11124089551540955999Rat
619974Aslargininosuccinate lyase123016092230178348Rat
619988Dnah10dynein, axonemal, heavy chain 10123723748237365258Rat
71079Lhx5LIM homeobox 5124166300041671437Rat
619781Erp29endoplasmic reticulum protein 29124061937740625884Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1123045043130464314Rat
61974Hpd4-hydroxyphenylpyruvate dioxygenase123882860638839956Rat
62073P2rx4purinergic receptor P2X 4123930802239325673Rat
3241P2rx7purinergic receptor P2X 7123935361339396042Rat
621006Atp6v0a2ATPase H+ transporting V0 subunit a2123736832137398233Rat
67376Sdsserine dehydratase124162042941627741Rat
708494Tpcn1two pore segment channel 1124150778441566847Rat
2772Gusbglucuronidase, beta123020206630215583Rat
620092Camkk2calcium/calmodulin-dependent protein kinase kinase 2123925340939302601Rat
620753CrcpCGRP receptor component123012523730160857Rat
727862Ift81intraflagellar transport 81123942016139507412Rat
620073Rph3arabphilin 3A124107329641149799Rat
620254Abcb9ATP binding cassette subfamily B member 9123792397437956678Rat
621244Ubcubiquitin C123663845736642734Rat
67404Clip1CAP-GLY domain containing linker protein 1123834520338452650Rat
69243Tmed2transmembrane p24 trafficking protein 2123747125937480344Rat
620171Trafd1TRAF type zinc finger domain containing 1124069552040709438Rat
621615Hip1rhuntingtin interacting protein 1 related123802451738053184Rat
708522Aacsacetoacetyl-CoA synthetase123651239336555694Rat
621110Psmd9proteasome 26S subunit, non-ATPase 9123878653938805121Rat
708533Rimbp2RIMS binding protein 2123139322931605567Rat
727952Hcar2hydroxycarboxylic acid receptor 2123816046438161546Rat
621760Oas1a2'-5' oligoadenylate synthetase 1A124120068041211393Rat
619826Rpl6ribosomal protein L6124087757840882032Rat
1303140Rilpl2Rab interacting lysosomal protein-like 2123754491837556453Rat
620819Eif2b1eukaryotic translation initiation factor 2B subunit alpha123744413637452391Rat
1303034Gpn3GPN-loop GTPase 3123967074639679364Rat
708461Plbd2phospholipase B domain containing 2124160000541619779Rat
628636Rnf34ring finger protein 34123916429039185209Rat
1305685Naa25N(alpha)-acetyltransferase 25, NatB auxiliary subunit124062800540680421Rat
708469Slc15a4solute carrier family 15 member 4123275382432773277Rat
735062Tmem132dtransmembrane protein 132D123193434332607768Rat
2174Atp2a2ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2123955390339603326Rat
1306837Dhx37DEAH-box helicase 37123659405836614165Rat
620643Vps33aVPS33A core subunit of CORVET and HOPS complexes123845981638482903Rat
1304576Vps37bVPS37B subunit of ESCRT-I123798479038023369Rat
1305004Sfswapsplicing factor SWAP123074056330811015Rat
1306125Anapc5anaphase-promoting complex subunit 5123920913439242696Rat
1305702Tbx5T-box transcription factor 5124205968842148226Rat
1307973Rilpl1Rab interacting lysosomal protein-like 1123749032037528393Rat
621467Adam1aADAM metallopeptidase domain 1a124053373140536632Rat
1305843Caln1calneuron 1122930711729796996Rat
1310656Pheta1PH domain containing endocytic trafficking adaptor 1124022531640230573Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1123266666432749617Rat
1310005Sbno1strawberry notch homolog 1123759369237650761Rat
1304763Cct6achaperonin containing TCP1 subunit 6A123049158430501813Rat
3377Ppp1ccprotein phosphatase 1 catalytic subunit gamma123986430239882030Rat
1306772Rita1RBPJ interacting and tubulin associated 1124148497041488889Rat
708393Oas1b2-5 oligoadenylate synthetase 1B124125576241266430Rat
620367RanRAN, member RAS oncogene family123131955631324105Rat
1308332Vps29VPS29 retromer complex component123969006939699114Rat
1311043SbdsSBDS, ribosome maturation factor122992144329930602Rat
1311985Arpc3actin related protein 2/3 complex, subunit 3123965395139667817Rat
1310885Diablodiablo, IAP-binding mitochondrial protein123849023038503344Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122996013230004727Rat
1359379Oas1i2 ' -5 ' oligoadenylate synthetase 1I124115548941167501Rat
1309774Zcchc8zinc finger CCHC-type containing 8123830366538327174Rat
2302Scarb1scavenger receptor class B, member 1123669495236761445Rat
1311541Mmp17matrix metallopeptidase 17123070190030728683Rat
1311541Mmp17matrix metallopeptidase 17123035387430356526Rat
1311873Orai1ORAI calcium release-activated calcium modulator 1123898190338995570Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122982499029919240Rat
1310861Fam216afamily with sequence similarity 216, member A123967968839688831Rat
1310867Pitpnm2phosphatidylinositol transfer protein, membrane-associated 2123780533237903856Rat
1310724Snrnp35small nuclear ribonucleoprotein U11/U12 subunit 35123753108237538823Rat
69219Aldh2aldehyde dehydrogenase 2 family member124046641840498813Rat
1310788Hvcn1hydrogen voltage-gated channel 1123982281439851093Rat
1308664Cdk2ap1cyclin-dependent kinase 2 associated protein 1123766836937677067Rat
1308764Psphphosphoserine phosphatase123051412830526551Rat
1308473Tpst1tyrosylprotein sulfotransferase 1123004575330112377Rat
1333968Olr1863-psolfactory receptor pseudogene 1863123479975834800396Rat
1308223Rad9bRAD9 checkpoint clamp component B123969907639731218Rat
1305494Gtf2h3general transcription factor IIH subunit 3123742755637444027Rat
1309612B3gnt4UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4123850336138506793Rat
1310217Kdm2blysine demethylase 2B123902192439161954Rat
1305967Cux2cut-like homeobox 2124001677440221067Rat
1308928Rbm19RNA binding motif protein 19124190797841993969Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1123160864131629961Rat
1310159Acad10acyl-CoA dehydrogenase family, member 10124041791840460562Rat
1306637Atxn2ataxin 2124026460140335637Rat
1310293Ncor2nuclear receptor co-repressor 2123687191737033701Rat
1307650Mrps17mitochondrial ribosomal protein S17123057038630573670Rat
1307657Arl6ip4ADP-ribosylation factor like GTPase 6 interacting protein 4123790437637906521Rat
1307905Kntc1kinetochore associated 1123820046338274162Rat
1310594Ogfod22-oxoglutarate and iron-dependent oxygenase domain containing 2123790713037910446Rat
1310349Oas1d2'-5' oligoadenylate synthetase 1D124117947741188796Rat
1309762Hectd4HECT domain E3 ubiquitin protein ligase 4124071207840860930Rat
68411Sh2b3SH2B adaptor protein 3124026199040265757Rat
1309192Sdslserine dehydratase-like124163699441647205Rat
1310383Pptc7protein phosphatase targeting COQ7123973110739769480Rat
1564882Rsrc2arginine and serine rich coiled-coil 2123827429038294294Rat
1559821RGD1559821similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle123318239433183048Rat
1359732Oas1h2 ' -5 ' oligoadenylate synthetase 1H124121458741224254Rat
1561461Lrrc43leucine rich repeat containing 43123850710238524715Rat
1566421Nipsnap2nipsnap homolog 2123052754030566090Rat
1562539Ddx54DEAD-box helicase 54124146964241484887Rat
1359647Oas1f2 ' -5 ' oligoadenylate synthetase 1F124122791041237209Rat
1561303Cfap73cilia and flagella associated protein 73124146301541469926Rat
1563253Sumf2sulfatase modifying factor 2123046502530490683Rat
1560258Nupr2nuclear protein 2, transcriptional regulator123030093630304041Rat
1562334Ccdc63coiled-coil domain containing 63123990512039950719Rat
1561886RGD1561886similar to ribosomal protein L27123719454137195050Rat
1560774MlxipMLX interacting protein123856743838638952Rat
1359611Oas1e2'-5' oligoadenylate synthetase 1E124128147941290500Rat
1359319Oas32'-5'-oligoadenylate synthetase 3124131308141368217Rat
1559988Zbed5zinc finger, BED-type containing 5123030846930314520Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1123021882530268990Rat
1311820Rasal1RAS protein activator like 1124141621841449445Rat
1564113Mapkapk5MAPK activated protein kinase 5124051037840529332Rat
1334044Olr1822-psolfactory receptor pseudogene 1822123601357036014197Rat
1359279Oas1k2 ' -5 ' oligoadenylate synthetase 1K124129380341307352Rat
1311927Anapc7anaphase promoting complex subunit 7123961389839641999Rat
1564245Myl2myosin light chain 2123995186339959065Rat
1560757IqcdIQ motif containing D124149045141507416Rat
1303319Tmem248transmembrane protein 248122993172829958050Rat
1566191Tmem132btransmembrane protein 132B123596971836398233Rat
1586391Ccdc62coiled-coil domain containing 62123805753238093916Rat
2558Stx2syntaxin 2123132420331360249Rat
1561711Bri3bpBri3 binding protein123657601836587839Rat
1585380Dtx1deltex E3 ubiquitin ligase 1124138388541415783Rat
1359697Oas22'-5' oligoadenylate synthetase 2124134141741363124Rat
1587560Kmt5alysine methyltransferase 5A123755815037581183Rat
1584200Denrdensity regulated reinitiation and release factor123809571738117758Rat
1565818Slc8b1solute carrier family 8 member B1124156698041590294Rat
1583091Morn3MORN repeat containing 3123895319938976520Rat
1583094LOC687612hypothetical protein LOC687612123894451238945148Rat
1583824Tmem132ctransmembrane protein 132C123280637233130746Rat
1583825Fzd10frizzled class receptor 10123175740731760604Rat
1563482RGD1563482similar to hypothetical protein FLJ38663123768015237682994Rat
1582914Kctd7potassium channel tetramerization domain containing 7123002408030033357Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122838187929268457Rat
1564948Cfap251cilia and flagella associated protein 251123870891538781598Rat
1566266Tctn1tectonic family member 1123979094839828215Rat
1586364Hcar1hydroxycarboxylic acid receptor 1123814517738146232Rat
1592278Frg1l1FSHD region gene 1-like 1123400385634004722Rat
1585128Bcl7aBAF chromatin remodeling complex subunit BCL7A123865929438691191Rat
1585183Il31interleukin 31123852757538538086Rat
1584031Tmem120btransmembrane protein 120B123889484738916237Rat
1584038Rhofras homolog family member F, filopodia associated123887976338894095Rat
1586551BrapBRCA1 associated protein124038189240417764Rat
1601131Ccdc92coiled-coil domain containing 92123721073537237848Rat
1596066Tmem116transmembrane protein 116124053726140618805Rat
1593402LOC690669similar to Spindlin-like protein 2 (SPIN-2)123507481635075519Rat
1594795Adgrd1adhesion G protein-coupled receptor D1123113480631249594Rat
1588777Rflnarefilin A123703873237047628Rat
1594709LOC690551similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18)124098148740981996Rat
1594781LOC689271similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2123125812931258546Rat
1596186Septin14septin 14123060016230623173Rat
1598368Mphosph9M-phase phosphoprotein 9123770028237766487Rat
1591895Tctn2tectonic family member 2123740089637427256Rat
1598196LOC501838similar to 60S ribosomal protein L32123933566839337002Rat
1598198LOC501835similar to 40S ribosomal protein S9123019322130194563Rat
2320799LOC10036456140S ribosomal protein S27-like124066904740669754Rat
2322461LOC100360290ribosomal protein S20-like124068584640686372Rat
2322512LOC100360238rCG21419-like124055178640556984Rat
2323325Setd1bSET domain containing 1B, histone lysine methyltransferase123884316738869180Rat
2323644LOC100359550protein S100-A11-like123833986338340304Rat
2324513LOC10036254139S ribosomal protein L23, mitochondrial-like123386054333860971Rat
2323959Auts2activator of transcription and developmental regulator AUTS2122715536228252752Rat
2324094Ddx55DEAD-box helicase 55123745300537468935Rat
2324823LOC100363066ribosomal protein L38-like123962854639628858Rat
2324824Zfp11zinc finger protein 11123065524530668370Rat
2325045LOC100359686NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1124145652741456738Rat
6488068LOC100912262general transcription factor II-I repeat domain-containing protein 1-like122901222929080026Rat
6492489LOC100911540guanine nucleotide-binding protein subunit beta-2-like 1-like123590536235906429Rat
6487394LOC100912379neutrophil cytosol factor 1-like122897652828978633Rat
6491226Zfp664zinc finger protein 664123620132736203396Rat
6498646LOC100910427probable peptide chain release factor C12orf65 homolog, mitochondrial-like123767868237684533Rat
6496638LOC100910788coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like123044334330446075Rat
7504251LOC10254970640S ribosomal protein S10-like124183544341835939Rat
7528898LOC10254708760S ribosomal protein L7-like123928488239285960Rat
7507387LOC102556456transmembrane protein 254-like123309252533095657Rat
7501350LOC102550242ubiquitin-conjugating enzyme E2 variant 1-like123893553638944189Rat
7503829LOC102548903uncharacterized LOC102548903123965424539660733Rat
7519457LOC102555730uncharacterized LOC102555730123684325936844420Rat
7634124LOC102550309uncharacterized LOC102550309123510001735105553Rat
7559672LOC102554701zinc finger protein AEBP2-like122846925328477633Rat
7627339LOC102549962uncharacterized LOC102549962124209422042095389Rat
7570545LOC102549553uncharacterized LOC102549553124167157541683677Rat
7543130LOC102552690uncharacterized LOC102552690123798001337984712Rat
7543274LOC102556457F-box only protein 22-like124031720840320831Rat
7573572LOC102549705uncharacterized LOC102549705123989078339899849Rat
7580031LOC102555795uncharacterized LOC102555795123718175137183042Rat
7563841LOC102552626uncharacterized LOC102552626123782675137837870Rat
7568494LOC102556093uncharacterized LOC102556093123887013238878652Rat
7586771LOC102547495uncharacterized LOC102547495123882128738828645Rat
7677226LOC102556092uncharacterized LOC102556092123718383937210624Rat
7684404LOC102550645uncharacterized LOC102550645122928902029294566Rat
7689144LOC102555340uncharacterized LOC102555340123094591230954007Rat
7734862Lraplocus regulating alcohol preference123901625839017876Rat
7668786LOC102549552uncharacterized LOC102549552123388218233884539Rat
7720926LOC102550116zinc finger protein with KRAB and SCAN domains 7-like123064142430647457Rat
7709136LOC102550582uncharacterized LOC102550582123556197335567921Rat
7710500LOC102546488uncharacterized LOC102546488123899575339005428Rat
9133337LOC103691347eukaryotic translation initiation factor 1 pseudogene123733163937332271Rat
9188281LOC103691337uncharacterized LOC103691337123335267333357264Rat
9192914LOC103691322uncharacterized LOC103691322123013684030139887Rat
9203765LOC103691377uncharacterized LOC103691377124155242641555266Rat
9170642LOC103691310autism susceptibility gene 2 protein-like122715536427647641Rat
9221590LOC103691323heterogeneous nuclear ribonucleoprotein Q pseudogene123062420930626524Rat
9351682LOC103693647kinetochore-associated protein 1-like123823512538237872Rat
9271205LOC103691316uncharacterized LOC103691316122884306328844825Rat
9310086LOC103693638gametogenetin-like122815519628160152Rat
9318934LOC103693646uncharacterized LOC103693646123808179038082365Rat
9235993LOC103691507zinc finger protein 471-like123062629730641417Rat
9386528LOC10369150960S ribosomal protein L7-like123325030533288256Rat
9379917LOC103691346uncharacterized LOC103691346123683545536838332Rat
9339716LOC103690026S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like122918736829231035Rat
9342443LOC103693640MLV-related proviral Env polyprotein-like123042533230427226Rat
9461615LOC103691351uncharacterized LOC103691351123791050537912208Rat
9331224LOC103691357uncharacterized LOC103691357123987469639875450Rat
9390395LOC103691343uncharacterized LOC103691343123388785633896540Rat
9474710LOC103693639heterogeneous nuclear ribonucleoprotein Q pseudogene123033430130335350Rat
9402189LOC103691309uncharacterized LOC103691309122742162227424633Rat
9443604LOC103691321interferon-induced transmembrane protein 1 pseudogene122989628029898079Rat
9447806LOC103693648wiskott-Aldrich syndrome protein family member 1-like123899548338998892Rat
9451108LOC103691320uncharacterized LOC103691320122938338729384947Rat
11361258LOC108348169probable peptide chain release factor C12orf65 homolog, mitochondrial123768605137699733Rat
11355720LOC108352442uncharacterized LOC108352442123290338532919782Rat
11371096LOC108352485MLV-related proviral Env polyprotein-like123032210530324506Rat
11367381Trnaf-gaa4transfer RNA phenylalanine (anticodon GAA) 4123662320136623273Rat
11472079LOC108352443uncharacterized LOC108352443123282760232837733Rat
11457842LOC108352444uncharacterized LOC108352444123330768833308604Rat
11445374LOC108352447uncharacterized LOC108352447123965616139659140Rat
11363226LOC108352445uncharacterized LOC108352445123368746733694713Rat
11368791LOC108352452uncharacterized LOC108352452124166810441674841Rat
11438813LOC108352486heterogeneous nuclear ribonucleoprotein Q-like123032485730338434Rat
11371095LOC10835244660S ribosomal protein L21 pseudogene123949620939497178Rat
11440418Trnad-guc4transfer RNA aspartic acid (anticodon GUC) 4123662033836620409Rat
11405284LOC108352488uncharacterized LOC108352488123392105433975355Rat
11406627LOC10835250140S ribosomal protein S20-like123180506831805515Rat
11419895LOC108352449P2X purinoceptor 7-like123992494939929929Rat
11425977Trnad-guc5transfer RNA aspartic acid (anticodon GUC) 5123662365636623727Rat
11384356LOC108352487heterogeneous nuclear ribonucleoprotein Q pseudogene123062545430648708Rat
11373727Trnaa-ugc4transfer RNA alanine (anticodon UGC) 4123662497336625044Rat
11412175LOC108352450uncharacterized LOC108352450124097084740980813Rat
11500192LOC108352498uncharacterized LOC108352498122766025627667957Rat
11476624LOC108352489Y-linked testis-specific protein 1-like123481510934817152Rat
11482332LOC10835243940S ribosomal protein S15a pseudogene122962714929627592Rat
11517466Trnaa-ugc3transfer RNA alanine (anticodon UGC) 3123661973836619809Rat
11517723LOC108352448uncharacterized LOC108352448123974142739748976Rat
11518793LOC108352441uncharacterized LOC108352441123163007331633904Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene123064966830650107Rat
11493793LOC108352502uncharacterized LOC108352502123422580134232672Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10125DXMgh7230123928233939282571Ratregion
33955D1Mit22124123681496536815102Ratregion
34070D12Mgh7138124122897541229112Ratregion
34246D12Mgh3118122728547327285590Ratregion
34729D12Mgh5132123172356531723688Ratregion
11281D12Wox15124162873441628890Ratregion
11282D12Arb7340124162858041628927Ratregion
36025D12Rat23154122719009627190240Ratregion
36101D12Rat15152123197542431975590Ratregion
36119D12Rat94265123274850532748771Ratregion
36125D12Rat14185123230502032305182Ratregion
37334D12Rat46142123423293034233087Ratregion
37346D12Rat27205122786940927869615Ratregion
37366D12Rat54115124133132341331437Ratregion
35433D12Rat17149123596436035964508Ratregion
36805D12Rat13170122788282827882997Ratregion
37830D12Rat36200123752188437522089Ratregion
36490D12Rat18161124021591240216072Ratregion
36671D12Rat19164124219664142196800Ratregion
36755D12Rat11165122801414728014311Ratregion
36795D12Rat24174123780070237800875Ratregion
35126D12Rat16170123426490634265075Ratregion
35923D12Rat12152122791119627911339Ratregion
39626D12Rat75215122999808229998298Ratregion
39844D12Rat76109123197981031979901Ratregion
38084D12Rat96214123706260837062809Ratregion
38108D12Rat50244123942162339421866Ratregion
40454D12Rat100133123995010139950233Ratregion
40668D12Rat78216123627694936277154Ratregion
38404D12Rat45248122821709828217343Ratregion
38736D12Rat48201124169065441690854Ratregion
40112D12Rat84167124043556140435727Ratregion
40214D12Rat83158123013793630138078Ratregion
39060D12Rat30201123840880038409001Ratregion
39332D12Rat52181124084240540842549Ratregion
39446D12Rat99231122895930628959532Ratregion
41962D12Arb6290124129137841291738Ratregion
41962D12Arb6290124121344841213801Ratregion
41156D12Rat79221124061778340618007Ratregion
41440D12Rat74137122798203027982170Ratregion
42966D12Rat95203123335318933353399Ratregion
42967D12Rat106206123422778834227989Ratregion
42379D12Rat111218124181793941818146Ratregion
40766D12Rat77100123400006234000159Ratregion
41626D12Rat93132123228978232289887Ratregion
41688D12Rat97115124166951741669629Ratregion
41786D12Rat101106124033110940331214Ratregion
41826D12Rat107223123755388037554080Ratregion
44997D12Got78173123901079639010968Ratregion
44998D12Got79153123991765539917807Ratregion
45000D12Got85145124178488941785033Ratregion
45001D12Got70226123426486334265088Ratregion
45002D12Got84132124202369642023806Ratregion
45004D12Got83219124153297641533193Ratregion
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5503072Sbds161122992150829922592Ratregion
5504819ha2178866122743937427440239Ratregion
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5505919Mmp1795123071773230717826Ratregion
5506193UniSTS:498764430123162416631624595Ratregion
5506221Dtx10124141372541414034Ratregion
5506288STS-Z413780123201443432014968Ratregion
5506729G44856274123976561139765884Ratregion
5499633MARC_5817-5818:991939742:3300123318262533182924Ratregion
5499605MARC_2373-2374:991932707:1334124026659240267721Ratregion
5499837UniSTS:234929717123829144638292162Ratregion
5502733RSRC2168123829144138291608Ratregion
5503095ASL204123017638030176843Ratregion
5500847G15902192123960005239600243Ratregion
5500408GDB:45513084123883375938833842Ratregion
5503644UniSTS:4654521480124141346941414948Ratregion
5501922MARC_17487-17488:1030377680:10124030068540302210Ratregion
5502313RH1244050123884435338844563Ratregion
5502345RH124557175123747129037471464Ratregion
5502875Fzd10838123175926231760101Ratregion
Position Markers

Flank 1: (D12Rat19)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01242,196,641 - 42,196,800NCBI
Rnor_5.01244,046,371 - 44,046,530UniSTS
RGSC_v3.41237,906,389 - 37,906,549RGD
RGSC_v3.41237,906,390 - 37,906,549UniSTS
RGSC_v3.11237,769,778 - 37,769,937RGD
Celera1238,312,863 - 38,313,022UniSTS
RH 3.4 Map12624.1UniSTS
RH 3.4 Map12624.1RGD
RH 2.0 Map12461.4RGD
SHRSP x BN Map1244.3699RGD
FHH x ACI Map1235.6899RGD
Peak: (D12Rat18)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01240,215,912 - 40,216,072NCBI
Rnor_5.01242,086,869 - 42,087,029UniSTS
RGSC_v3.41235,907,119 - 35,907,279UniSTS
RGSC_v3.41235,907,118 - 35,907,279RGD
RGSC_v3.11235,770,507 - 35,770,667RGD
Celera1236,367,985 - 36,368,141UniSTS
Cytogenetic Map12q16UniSTS
RH 3.4 Map12618.7RGD
RH 3.4 Map12618.7UniSTS
RH 2.0 Map12465.7RGD
FHH x ACI Map1235.52RGD
Flank 2: (D12Rat23)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,190,096 - 27,190,240NCBI
Rnor_5.01229,163,046 - 29,163,190UniSTS
RGSC_v3.41225,367,107 - 25,367,251UniSTS
RGSC_v3.41225,367,106 - 25,367,251RGD
RGSC_v3.11225,230,197 - 25,230,561RGD
Celera1225,875,595 - 25,875,739UniSTS
Cytogenetic Map12q12UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1211.22RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12130749723Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12136919844Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12138334225Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)1215081045150810Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1215081045150810Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)1249257845492578Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12247568747475687Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12251344247513442Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12251344247513442Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12421005149210051Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12895459327911196Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6922362652716770Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922363052716770Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12978983452716770Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121017588931975590Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)121025689031723732Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)121176499537522089Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121312721127285590Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721131723688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721150320041Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121441977552716770Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121502198652716770Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121571460935964508Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121571460941291738Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121590890052716770Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121590890052716770Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121718558044098244Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121796086538409001Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121834247752716770Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121834247752716770Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121872904352716770Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121875259352716770Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101875259352716770Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)122265070227190240Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122265070245946937Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265070248598906Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)122265070252716770Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265072141291738Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)122287629743799153Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122490659052716770Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122609884552716770Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122719024042196641Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122728547336161779Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360949560679Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360950757185Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123172356547433663Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123172356551955754Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123172356552716770Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)123172368845946802Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123228978243305579Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123752188451955754Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Eae13


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Eae13  Experimental allergic encephalomyelitis QTL 13    Experimental Autoimmune (allergic) Encephalomyelitis QTL 13  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference