Eae12 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Eae12 (Experimental allergic encephalomyelitis QTL 12) Rattus norvegicus

Symbol: Eae12
Name: Experimental allergic encephalomyelitis QTL 12
RGD ID: 70168
Also known as: Experimental Autoimmune (allergic) Encephalomyelitis QTL 12
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis incidence/prevalence measurement   (CMO:0001046)    
LOD Score: Not Available
P Value: 9.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01095,508,221 - 104,329,177RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01095,243,104 - 103,956,674RGDRnor5.0
RGSC_v3.41096,667,338 - 105,886,241RGDRGSC3.4
RGSC_v3.11096,681,708 - 105,900,648RGD
Cross Type: F2
Strains Crossed: ACI/N DA 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
DA  (IEA)

References

References - curated
1. Dahlman I, etal., Hum Mol Genet 1999 Nov;8(12):2183-90.
2. QTL data import from the RatMap database

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3572Rgs9regulator of G-protein signaling 9109750997197582188Rat
2739Grin2cglutamate ionotropic receptor NMDA type subunit 2C10103798290103816923Rat
619758Grb2growth factor receptor bound protein 210104193953104263071Rat
61824Kcnj16potassium inwardly-rectifying channel, subfamily J, member 16109933089499391551Rat
3391Prkar1aprotein kinase cAMP-dependent type I regulatory subunit alpha109794070597959199Rat
3395Prkcaprotein kinase C, alpha109618650996585168Rat
3763Sstr2somatostatin receptor 210102136283102143449Rat
620666Map2k6mitogen-activated protein kinase kinase 6109870716098823054Rat
628661Abca5ATP binding cassette subfamily A member 5109857322698645028Rat
621648Fdxrferredoxin reductase10103817724103826413Rat
69259Axin2axin 2109721248397238824Rat
620474Sox9SRY-box transcription factor 910101288528101294030Rat
628804Cacng4calcium voltage-gated channel auxiliary subunit gamma 4109595416096015484Rat
628805Cacng5calcium voltage-gated channel auxiliary subunit gamma 5109612224096166606Rat
621761Sumo2small ubiquitin-like modifier 210104085401104097983Rat
2249Cacng1calcium voltage-gated channel auxiliary subunit gamma 1109592147995934170Rat
1307049Helzhelicase with zinc finger109576775495911025Rat
1304830Otop2otopetrin 210103874383103883953Rat
620083Atp5pdATP synthase peripheral stalk subunit d10103967340103972552Rat
1304594Cog1component of oligomeric golgi complex 110102167594102180569Rat
735117Slc16a6solute carrier family 16, member 6109773370197758723Rat
1304846Amz2archaelysin family metallopeptidase 2109771090597721442Rat
1305573Rpl38ribosomal protein L3810103198424103202059Rat
1306364Fam20aFAM20A, golgi associated secretory pathway pseudokinase109796246798017171Rat
1305426Cd300leCd300 molecule-like family member E10103581384103590607Rat
1306397Cpsf4lcleavage and polyadenylation specific factor 4-like10102213892102227708Rat
1307069Abca8ATP binding cassette subfamily A member 8109823691998308288Rat
1307333Abca8aATP-binding cassette, subfamily A (ABC1), member 8a109831948098390484Rat
1304551Ush1gUSH1 protein network component sans10103866566103873416Rat
1305931Abca9ATP binding cassette subfamily A member 9109841226398472258Rat
1306663Otop3otopetrin 310103887045103898331Rat
708538Slc9a3r1SLC9A3 regulator 110103713045103730145Rat
61968Kcnj2potassium inwardly-rectifying channel, subfamily J, member 2109942933799442520Rat
1307754Wipi1WD repeat domain, phosphoinositide interacting 1109785973097896949Rat
1310397Sdk2sidekick cell adhesion molecule 210102299593102576554Rat
1307953Tmem104transmembrane protein 10410103737162103795751Rat
1309553Gga3golgi associated, gamma adaptin ear containing, ARF binding protein 310104137655104156576Rat
1309733Cd300lfCd300 molecule-like family member F10103669781103690584Rat
1306881Cdr2lcerebellar degeneration-related protein 2-like10103934364103948318Rat
1311352Trim80tripartite motif protein 8010103984644104004060Rat
1311408Gprc5cG protein-coupled receptor, class C, group 5, member C10103395222103417360Rat
1359207MGC95210hypothetical LOC28779810102199837102210769Rat
1311981Slc39a11solute carrier family 39, member 1110101754842102169100Rat
1311567Cdc42ep4CDC42 effector protein 410102244680102269272Rat
1308998Abca6ATP binding cassette subfamily A member 6109847771698546699Rat
1310625Apohapolipoprotein H109664001396653939Rat
1311422Hid1HID1 domain containing10103899160103919649Rat
1310221Gna13G protein subunit alpha 13109764719697680030Rat
1306571Arsgarylsulfatase G109772255097859975Rat
1309164Mrps7mitochondrial ribosomal protein S710104155805104158840Rat
1309685Mif4gdMIF4G domain containing10104159170104164166Rat
1307096Nat9N-acetyltransferase 910103730215103737052Rat
1307942Mrpl58mitochondrial ribosomal protein L5810103956019103962515Rat
1310043Armc7armadillo repeat containing 710104036250104052852Rat
1566063Kctd2potassium channel tetramerization domain containing 210103972700103984398Rat
1559926Gpr142G protein-coupled receptor 14210103341391103351710Rat
1559936Kif19kinesin family member 1910103308392103334466Rat
1359325Jpt1Jupiter microtubule associated homolog 110104057739104075776Rat
1359290RGD1359290Ribosomal_L22 domain containing protein RGD1359290109563470695657977Rat
1359305Psmd12proteasome 26S subunit, non-ATPase 12109570680895725452Rat
1564168Cep112centrosomal protein 112109666029497146426Rat
1311942Nup85nucleoporin 8510104118999104137258Rat
1311950Fads6fatty acid desaturase 610103832838103848035Rat
1359554Slc25a19solute carrier family 25 member 1910104166594104179523Rat
1562969Ttyh2tweety family member 210103206085103248911Rat
1359602Dnai2dynein, axonemal, intermediate chain 210103266343103301521Rat
1582971LOC688936similar to ribosomal protein S23109570277195703278Rat
1582896Slc16a5solute carrier family 16 member 510104019888104035735Rat
1583719Cd300aCd300a molecule10103437978103451170Rat
1586145LOC363703similar to 60S ribosomal protein L6 (TAX-responsive enhancer element-binding protein 107) (TAXREB107) (Neoplasm-related protein C140)10103611126103612159Rat
1559578RGD1559578RGD1559578109809105498124718Rat
1563331Btbd17BTB domain containing 1710103334052103341820Rat
1565086RGD1565086similar to ubiquitin-conjugating enzyme E2C10100524061100529373Rat
1565161Cd300cCD300c molecule10103562526103565699Rat
1563409Fam104afamily with sequence similarity 104, member A10102179478102200488Rat
1585137Cd300eCd300e molecule10103599372103619070Rat
1565459RGD1565459similar to ribosomal protein L10a109750466897505636Rat
1559458RGD1559458similar to Immunoglobulin superfamily, member 710103493609103498615Rat
1583718Cd300lbCD300 molecule-like family member b10103471082103481071Rat
1597047Pitpnc1phosphatidylinositol transfer protein, cytoplasmic 1109542987995697734Rat
1597401LOC689085hypothetical protein LOC689085109748731897488020Rat
2319982Rab37RAB37, member RAS oncogene family10103643841103711830Rat
2323140LOC100359904hypothetical LOC10035990410100161068100161714Rat
2321875Nt5c5', 3'-nucleotidase, cytosolic10104052807104054805Rat
6488368LOC100912202uncharacterized LOC100912202109793709697940732Rat
6484895LOC100913061ferritin light chain 1-like10104115498104116098Rat
6502587LOC100909607ribosome biogenesis protein NSA2 homolog109931363299314402Rat
7529341LOC102550334uncharacterized LOC102550334109737602197414751Rat
7510337LOC102547233uncharacterized LOC10254723310101157250101174169Rat
7651542LOC10255116760S ribosomal protein L23a-like109823506298236329Rat
7625474LOC102550846uncharacterized LOC102550846109762590097627377Rat
7658394LOC102548022uncharacterized LOC10254802210102746101102755927Rat
7610797LOC102553158ATP-binding cassette sub-family A member 9-like109840277098406702Rat
7611149LOC102549596uncharacterized LOC10254959610101528996101539569Rat
7593118LOC102547687uncharacterized LOC10254768710102535825102548475Rat
7571478LOC102554289uncharacterized LOC10255428910103790740103792119Rat
7591978LOC102548333uncharacterized LOC10254833310103317619103324672Rat
7619396LOC10255295460S ribosomal protein L7a-like109665741396663572Rat
7578461LOC102549422uncharacterized LOC10254942210101470294101485483Rat
7579672LOC102550782uncharacterized LOC102550782109755359197556928Rat
7551922LOC102550454uncharacterized LOC102550454109747289197484170Rat
7584761LOC102554765uncharacterized LOC10255476510103813610103817828Rat
7566917LOC102549521uncharacterized LOC10254952110101493136101503079Rat
7693387LOC102551705uncharacterized LOC102551705109884988098864177Rat
7685108LOC102553252developmental pluripotency-associated protein 2-like10104313691104320809Rat
7689502LOC102547853uncharacterized LOC10254785310102413229102416327Rat
7737388LOC102547123uncharacterized LOC10254712310101108455101123699Rat
7734651LOC102549836uncharacterized LOC10254983610101554165101711465Rat
7698326LOC102550112uncharacterized LOC102550112109734615797349831Rat
7729026LOC10255188060S ribosomal protein L21-like109921017699210635Rat
7711305LOC102549802uncharacterized LOC102549802109592988295954229Rat
9136714LOC103693474uncharacterized LOC10369347410101236706101238831Rat
9097892LOC103693473uncharacterized LOC103693473109973064199773527Rat
9167333LOC103693476uncharacterized LOC10369347610103325259103331877Rat
9127985LOC103693471uncharacterized LOC103693471109718123697199347Rat
9228340LOC103693477uncharacterized LOC10369347710103620216103631407Rat
9316337LOC103693487extensin-like10102694451102695209Rat
9322766LOC103693472uncharacterized LOC103693472109894340998945711Rat
9369954LOC103693475uncharacterized LOC10369347510103052274103053525Rat
9305592LOC10369347060S ribosomal protein L31-like109555590995556357Rat
9396450LOC103693478uncharacterized LOC10369347810103724133103725505Rat
9402206LOC103693488uncharacterized LOC10369348810104137656104138926Rat
9443602LOC103690424CMRF35-like molecule 310103542617103546810Rat
9685629Mir297microRNA 29710101696273101696338Rat
11444070LOC108352227uncharacterized LOC108352227109724819797251381Rat
11366916LOC108352157uncharacterized LOC10835215710101616982101632767Rat
11422283LOC108352188high mobility group protein B3 pseudogene10101126368101130614Rat
11358786LOC108352154uncharacterized LOC108352154109982386699835898Rat
11384411LOC108352155uncharacterized LOC10835215510101279038101285003Rat
11396194LOC108352153uncharacterized LOC108352153109977522099784774Rat
11407049Trnar-ccu7transfer RNA arginine (anticodon CCU) 710103964521103964593Rat
11397811LOC108352150uncharacterized LOC108352150109598566795999960Rat
11399179LOC108352156uncharacterized LOC10835215610101524104101527511Rat
11411384LOC108352151uncharacterized LOC108352151109603366496054828Rat
11381410LOC108352228uncharacterized LOC108352228109914122999146715Rat
11501768LOC108352159uncharacterized LOC10835215910103428301103442056Rat
11480774Trnaa-agc7transfer RNA alanine (anticodon AGC) 7109632067896320749Rat
11507218Trnar-ccu8transfer RNA arginine (anticodon CCU) 810103964872103964944Rat
11513193LOC108352158uncharacterized LOC10835215810101891715101895941Rat
11494208Trnar-ucg2transfer RNA arginine (anticodon UCG) 210103965339103965411Rat
11485855LOC108352152uncharacterized LOC108352152109695696696963775Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34100D10Mgh3144109893920998939361Ratregion
34485D10Mgh4116109563823495638337Ratregion
36283D10Rat15170109550805295508221Ratregion
36297D10Rat52149109585375595853898Ratregion
35256D10Rat11190109949221799492409Ratregion
35386D10Rat815710102897474102897630Ratregion
36624D10Rat13306109596701995967298Ratregion
34779D10Rat53128109648230296482441Ratregion
34941D10Rat717310104329177104329349Ratregion
35573D10Rat10127109917156499171690Ratregion
35627D10Rat12170109804467598044833Ratregion
35705D10Rat14172109600269596002866Ratregion
39928D10Rat189200109652081696521010Ratregion
40488D10Rat20116210101758317101758478Ratregion
38542D10Rat13223410100155035100155272Ratregion
40070D10Rat18813010100177037100177166Ratregion
38844D10Rat10120610101691150101691360Ratregion
39136D10Rat74212109781475497814965Ratregion
39358D10Rat8821110101505130101505331Ratregion
41382D10Rat13616410101379310101379475Ratregion
41382D10Rat13616410101379142101379475Ratregion
42934D10Rat233230109798435997984572Ratregion
42935D10Rat23220010100074284100074480Ratregion
42936D10Rat23124010102032317102032553Ratregion
42937D10Rat22921010102355847102356055Ratregion
42938D10Rat22811810102495760102495874Ratregion
42939D10Rat26815810103017062103017223Ratregion
42940D10Rat22723310102874249102874486Ratregion
42373D10Rat26713810100224727100224855Ratregion
40824D10Rat138223109708393897084160Ratregion
41860D10Rat23020810101814047101814248Ratregion
44827D10Got146161109573709395737253Ratregion
44829D10Got147188109708596397086150Ratregion
44830D10Got145155109661343896613592Ratregion
44832D10Got148268109736981797370084Ratregion
44833D10Got149206109809452698094730Ratregion
44835D10Got150282109813255498132835Ratregion
44836D10Got15410710100460820100460926Ratregion
44837D10Got15214210101211245101211534Ratregion
44837D10Got15214210101211245101211386Ratregion
44838D10Got153111109991572799915837Ratregion
44839D10Wox715510102427604102427718Ratregion
44840D10Got15615410102739114102739267Ratregion
44841D10Got15820610103618467103618672Ratregion
59972D10Got151288109816554198165827Ratregion
59973D10Got15517110103609431103609601Ratregion
59974D10Got15713010103914364103914493Ratregion
59976D10Got163112109728991997290024Ratregion
66415D10Mco4424910101405086101405340Ratregion
66501D10Mco68424109739174597392185Ratregion
66502D10Mco69230109878796198788196Ratregion
66520D10Mco7025510100287441100287699Ratregion
66521D10Mco7126310102555358102555617Ratregion
66563D10Mco618710101482415101482600Ratregion
66565D10Mco7314109806091598061230Ratregion
66715D10Mco15183109730835897308569Ratregion
1578868D10Chm159239109614823896148476Ratregion
1578819D10Chm88248109768102297681269Ratregion
1578831D10Chm248231109897616898976349Ratregion
1578851D10Chm47241109837091998371159Ratregion
1578856D10Chm233290109610539096105679Ratregion
1578873D10Chm43200109807726698077465Ratregion
1578874D10Chm155193109888851698888676Ratregion
1578879D10Chm11203109779096597791167Ratregion
1578882D10Chm66219109797052597970743Ratregion
1578890D10Chm249243109877898698779229Ratregion
1578893D10Chm8425010101451754101452003Ratregion
1578902D10Chm253223109853786098538082Ratregion
1578902D10Chm253223109853770998538082Ratregion
1578908D10Chm8317710101103258101103434Ratregion
1578916D10Chm234278109672888896729165Ratregion
1578920D10Chm55195109768105597681269Ratregion
1578923D10Chm235254109716634797166600Ratregion
1578932D10Chm54280109773111097731409Ratregion
1578936D10Chm247165109911767799118231Ratregion
1578941D10Chm23199109804839698048594Ratregion
1578962D10Chm238250109561707595617324Ratregion
1578975D10Chm240249109767852597678775Ratregion
1578978D10Chm19160109629504996295208Ratregion
1578980D10Chm12206109627908396279287Ratregion
1578981D10Chm254269109865794298658210Ratregion
1578983D10Chm156231109930317399303326Ratregion
1579000D10Chm241238109928331599283552Ratregion
1579012D10Chm8624610101061375101061620Ratregion
1579046D10Chm157157109779100297791158Ratregion
1579065D10Chm261224109844875598448978Ratregion
1579067D10Chm250218109933872499338941Ratregion
1579089D10Chm8220510101118905101119109Ratregion
1579093D10Chm14218109807922198079438Ratregion
1579123D10Chm25202109822106598221266Ratregion
1579125D10Chm48201109822878998228989Ratregion
1579130D10Chm154233109828232398282519Ratregion
1579131D10Chm87231109769360597693835Ratregion
1579137D10Chm21183109762464997624831Ratregion
1579139D10Chm10201109561707595617275Ratregion
1579146D10Chm160249109703413597034383Ratregion
1579165D10Chm44-2200109814850898148707Ratregion
1579168D10Chm260250109844222998442482Ratregion
1579174D10Chm49209109610019096100398Ratregion
1579176D10Chm67150109806636598066514Ratregion
1579177D10Chm90250109766197797662226Ratregion
1628185D10Got218245109719204297192286Ratregion
1628374D10Got234134109685683896856971Ratregion
1632738D10Got24917410103588325103588498Ratregion
1635341D10Got21917910103294232103294410Ratregion
7192934Sox9010101289201101290121Ratregion
7192936Sox939610101268797101269192Ratregion
7193029Sox9010101290265101291570Ratregion
7191222D10MIT1122610100759725100759938Ratregion
5038788RH12733321810102179511102179728Ratregion
5036382Kcnj2196109943911199439306Ratregion
5039056RH12748719310103259605103259797Ratregion
5036877AU04948927710103748587103748863Ratregion
5036901AU049565192109587160495871795Ratregion
5036949AU04972126410100460641100460904Ratregion
5037091RH46167152109832515598325400Ratregion
5037127D17S1792256109764161197641866Ratregion
5031494AU04813914510101944808101944952Ratregion
5028851RH142572127109783442497834550Ratregion
5031534AU048011293109860831898608607Ratregion
5028965RH142998119109944241499442532Ratregion
5031816AU04705818010100292462100292641Ratregion
5026472RH13234118910103469080103469268Ratregion
5026492RH13241920010103798486103798685Ratregion
5032299AV22092012010101292274101292393Ratregion
5035082Cda0wb1114710104137077104137223Ratregion
5032399AI606893125109796258397962707Ratregion
5032753RH13517520410104056117104056320Ratregion
5033021RH137301180109734314597343324Ratregion
5030365AW533983187109714619997146385Ratregion
5025244RH12757019010104159214104159403Ratregion
5027815RH94851241109619162996191868Ratregion
5030425BF39754018710101157615101157801Ratregion
5025378RH128086204109773396197734164Ratregion
5033471RH13895418910103331857103333015Ratregion
5033797RH140159194109718129097181483Ratregion
5025780RH12963715010103451388103451537Ratregion
5031177BF413613154109768220297682355Ratregion
5053611RH14274915310104165726104165878Ratregion
5056569RH14445429710102302607102302903Ratregion
5057063D7Arb609a96710101780904101781870Ratregion
5052119RH94850204109619199196192194Ratregion
5055349RH143750300109588172595882024Ratregion
5058704BE102341205109793287997933083Ratregion
5056501RH14441523210103899382103899613Ratregion
5056411RH144363229109939050699390734Ratregion
5055743RH143977133109860988198611135Ratregion
5049848RH13371619210102179328102180507Ratregion
5050034RH13382419310104195460104195652Ratregion
5050874RH134308183109823698198237163Ratregion
5054311RH143151100109944785999447958Ratregion
5054641RH143341101109588556495885664Ratregion
5044208RH130471182109768434897684529Ratregion
5043410RH13001019910102244760102244958Ratregion
5041400RH12883519310103620216103620408Ratregion
5044616RH13070615010103413941103414090Ratregion
5045848RH131413194109785948797859680Ratregion
5045862RH1314220109794006197940220Ratregion
5048018RH13266118410103795423103795606Ratregion
5049464RH13349622010101555127101555346Ratregion
5048270RH132806187109857357098573756Ratregion
5048292RH132819192109592121995921410Ratregion
5048350RH13285220210103711590103711791Ratregion
5048516RH13294818110102754201102754381Ratregion
5042776RH12963919310103451173103451365Ratregion
5042812RH12966018010104052846104053025Ratregion
5039482RH127731182109938949499389675Ratregion
5043214RH129897198109795896197959158Ratregion
5040116RH12809819310103967452103968753Ratregion
5043764RH13021418110102181175102181355Ratregion
7193024Sox9010101289217101290178Ratregion
5041382RH128825164109771980197719964Ratregion
5074054RH137792140109653577596535914Ratregion
5072538RH136907203109795896297959164Ratregion
5075420RH13858314610101664533101664678Ratregion
5074836RH138246129109772121397721341Ratregion
5076148RH139007145109795799897958142Ratregion
5076880RH139432162109751448197514642Ratregion
5078060RH140121187109795885897959044Ratregion
5078426RH14033617110103905766103905936Ratregion
5078582RH140427130109785921697859345Ratregion
5078592RH14043321610102208052102208848Ratregion
5070800RH13471320110101293777101293977Ratregion
5070836RH134733187109723923797239423Ratregion
5080310RH14150618010101934575101934754Ratregion
5080530RH141633181109612241396122593Ratregion
5072958RH13715218910102244812102245000Ratregion
5073882RH137693207109665907896659284Ratregion
5073960RH13773814610103334156103334301Ratregion
5074352RH137967191109800431798004507Ratregion
5071454RH13509121510104166632104166846Ratregion
5073548RH137500180109773856297738741Ratregion
5072204RH13671314410104134199104134342Ratregion
5067098AU04796524610102137316102137561Ratregion
5067434AU04774813010100759700100759829Ratregion
5068302AU04722617410103210089103210262Ratregion
5068302AU04722617410103209761103210262Ratregion
5069488AU046465153109557517795575324Ratregion
5070159RH9450695109795722197957315Ratregion
5070257RH9456319210103798416103798607Ratregion
5069272AU046606151109560511195605261Ratregion
5060336AW531493167109732714997327315Ratregion
5060090AI072332206109590663895906843Ratregion
5063542BE107769185109595328895953472Ratregion
5065300AI535109214109857611198576324Ratregion
5060746BF389074120109696057496960693Ratregion
5062818AW528310100109768309697683195Ratregion
5065978BE116376168109775147897751645Ratregion
5066060BE11668715610101540300101540455Ratregion
5086923BQ191940203109813596998136175Ratregion
5082253BE119038180109751349297513671Ratregion
5087155BE107781152109827752498277675Ratregion
5087903Grin2c17910103798778103798956Ratregion
5088116Sox920710101291307101291513Ratregion
5089615AU04926012310102573676102573797Ratregion
5090357AU049703128109745331397453441Ratregion
5087580PMC34415P129710101288842101289138Ratregion
5087993Map2k6138109882297698823113Ratregion
5090491AU049782294109736981797370110Ratregion
5088659AU04870017610103609456103609631Ratregion
5081120RH141976209109937771499377922Ratregion
5090013AU04949821610101227942101228157Ratregion
5080844RH14181519610103732433103733092Ratregion
5081262RH142059220109780518397805402Ratregion
5081282RH14207020010102191785102191984Ratregion
5086768BM386718150109794880897948957Ratregion
5086829BE114693150109787885297879001Ratregion
5085776BQ21141915310101554229101554381Ratregion
5503885SSTR240410102142015102142418Ratregion
5505285Axin2105109721249797212601Ratregion
5506741G45081144109737401297374155Ratregion
5507071UniSTS:224328192109882261798822808Ratregion
5506971fc37g07.x1010101758421101758892Ratregion
5500863AFM196xf61162109709104597092206Ratregion
5501393Mif403109750510697505508Ratregion
5506212Cacng41461109595465095956110Ratregion
5502200GDB:580585010101289212101290136Ratregion
Position Markers

Flank 1: (D10Rat7)
Rat AssemblyChrPosition (strand)Source
Rnor_6.010104,329,177 - 104,329,349NCBI
Rnor_5.010103,956,674 - 103,956,846UniSTS
RGSC_v3.410105,886,241 - 105,886,414RGD
RGSC_v3.410105,886,242 - 105,886,414UniSTS
RGSC_v3.110105,900,648 - 105,900,974RGD
Celera1099,587,429 - 99,587,601UniSTS
Cytogenetic Map10q32.3UniSTS
RH 2.0 Map101343.1RGD
SHRSP x BN Map1087.0RGD
FHH x ACI Map1087.96RGD
Peak: (D10Mgh3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01098,939,209 - 98,939,361NCBI
Rnor_5.01098,640,137 - 98,640,289UniSTS
RGSC_v3.410100,090,301 - 100,090,454RGD
RGSC_v3.410100,090,302 - 100,090,454UniSTS
RGSC_v3.110100,104,671 - 100,104,824RGD
Celera1094,250,177 - 94,250,329UniSTS
Cytogenetic Map16p16UniSTS
RH 3.4 Map101080.69UniSTS
RH 3.4 Map101080.69RGD
RH 2.0 Map101218.6RGD
SHRSP x BN Map1077.15RGD
FHH x ACI Map1081.3499RGD
Flank 2: (D10Rat15)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01095,508,052 - 95,508,221NCBI
Rnor_5.01095,242,935 - 95,243,104UniSTS
RGSC_v3.41096,666,931 - 96,667,338RGD
RGSC_v3.41096,667,046 - 96,667,215UniSTS
RGSC_v3.11096,681,301 - 96,681,708RGD
Celera1090,903,901 - 90,904,070UniSTS
Cytogenetic Map10q32.1UniSTS
RH 3.4 Map101039.2UniSTS
RH 3.4 Map101039.2RGD
RH 2.0 Map101122.9RGD
SHRSP x BN Map1073.35RGD
FHH x ACI Map1076.9099RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10642907599492409Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109841807108540162Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014827894107857673Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014827894110992275Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)1020170031102897474Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1023861015112626471Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)1027237530101482600Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1027237530102427718Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103618592995845311Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1041260363106105607Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1041260363107857673Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1041260363107857673Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1043289657108540162Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104659302198939209Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)105063833795638337Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105310471898104718Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1053621375112626471Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1053621375112626471Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105362581598939209Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)1055224855100224855Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1055678976112626471Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)1055679084102427604Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1056698730101698730Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1060450007105450007Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1060875260105875260Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1060875260105875260Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1060875260105875260Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1062096293107096293Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)1064648175101691360Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1064648175102149713Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1064648175102149713Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1065590122110590122Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1065992275110992275Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1065992275110992275Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1067880046112626471Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1067988218110992091Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1069123603101482600Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1069385595112626471Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1069385595112626471Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1070166960112626471Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1070800069112626471Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1071692298112626471Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1073008136112626471Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1073008136112626471Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1073008136112626471Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1073467158112626471Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107504539197308358Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1075544754112626471Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1075544754112626471Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107598380599492217Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107598380599492217Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107705574198282519Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107897027998282519Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1078970279112626471Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1079927661112626471Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1080239190112626471Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1081515116101758478Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1083389828104994768Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1085079943112626471Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108551382295638337Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1086566908112626471Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108696256399303173Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108696256399303173Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108697786197308569Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1088544136107545372Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1090041957112626471Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)109029689799492409Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1090296897112626471Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109154814599492409Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1091689348112626471Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1093662786112626471Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1093662786112626471Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1093662786112626471Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1093662786112626471Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)93662786112626471Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)93662786112626471Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1093886117110992275Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1093886117112626471Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1094170766112626471Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1094486204107857673Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1095508221104329177Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1096520816110992275Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1098044675100287699Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1098079221112626471Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1098079221112626471Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1099492217107857673Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1099492217107857673Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)10100155035110992275Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)10100155035110992275Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10100460820108540162Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Eae12


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Eae12  Experimental allergic encephalomyelitis QTL 12    Experimental Autoimmune (allergic) Encephalomyelitis QTL 12  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details QTL is also significant for CNS inflammation (P = 0.0009) and paresis (P = 0.011) 69695