Scl33 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl33 (Serum cholesterol QTL 33) Rattus norvegicus

Symbol: Scl33
Name: Serum cholesterol QTL 33
RGD ID: 6903300
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: plasma total cholesterol level   (CMO:0000585)    
LOD Score: 2.0
P Value: 0.0125
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0892,612,869 - 132,457,389RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4889,742,772 - 129,041,809RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: LEW HTG 



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Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
HTG  (IEA)
LEW  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Rat model of familial combined hyperlipidemia as a result of comparative mapping. Ueno T, etal., Physiol Genomics 2004 Mar 12;17(1):38-47. Epub 2004 Jan 6.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D8Rat59)
Rat AssemblyChrPosition (strand)Source
Rnor_5.08115,112,735 - 115,113,003NCBI
RGSC_v3.48112,242,639 - 112,242,906RGD
RGSC_v3.18112,262,094 - 112,262,361RGD
RH 3.4 Map81127.5UniSTS
RH 3.4 Map81127.5RGD
RH 2.0 Map8872.8RGD
SHRSP x BN Map871.0RGD
FHH x ACI Map879.01RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 5-6 months old 266 F2 rats 1299960
qtl_general measurement method: polyethylene catheters were inserted in the carotid artery and blood was drawn 1299960
qtl_general software used: one-way analysis of variance (ANOVA) 1299960