Scl33 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Scl33 (Serum cholesterol QTL 33) Rattus norvegicus

Symbol: Scl33
Name: Serum cholesterol QTL 33
RGD ID: 6903300
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: plasma total cholesterol level   (CMO:0000585)    
LOD Score: 2.0
P Value: 0.0125
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0892,612,869 - 132,457,389RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4889,742,772 - 129,041,809RGD_MAPPER_PIPELINERGSC_v3.4
Cross Type: Not Available
Strains Crossed: LEW HTG 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
HTG  (IEA)
LEW  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Rat model of familial combined hyperlipidemia as a result of comparative mapping. Ueno T, etal., Physiol Genomics 2004 Mar 12;17(1):38-47. Epub 2004 Jan 6.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D8Rat59)
Rat AssemblyChrPosition (strand)Source
Rnor_5.08115,112,735 - 115,113,003NCBI
RGSC_v3.48112,242,639 - 112,242,906RGD
RGSC_v3.18112,262,094 - 112,262,361RGD
RH 3.4 Map81127.5UniSTS
RH 3.4 Map81127.5RGD
RH 2.0 Map8872.8RGD
SHRSP x BN Map871.0RGD
FHH x ACI Map879.01RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 5-6 months old 266 F2 rats 1299960
qtl_general measurement method: polyethylene catheters were inserted in the carotid artery and blood was drawn 1299960
qtl_general software used: one-way analysis of variance (ANOVA) 1299960