Bw97 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bw97 (Body weight QTL 97) Rattus norvegicus

Symbol: Bw97
Name: Body weight QTL 97
RGD ID: 6480786
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 5.03
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,126,575 - 227,604,520RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01245,529,606 - 248,013,094RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01252,776,360 - 255,263,602RGDRnor5.0
RGSC_v3.41230,963,695 - 233,551,254RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: NMcwi:HS 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
Weight Gain  (IAGP)

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body weight  (IDA)

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait
body mass  (IDA)

Rat Strain
NMcwi:HS  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7700759LOC102555808uncharacterized LOC1025558081225114347225140414Rat
7566943LOC102555989uncharacterized LOC1025559891225289547225334401Rat
2325049LOC100359682eukaryotic translation initiation factor 4E-like1225371014225371531Rat
1307779Rfx3regulatory factor X31225449872225709622Rat
41377637LOC120100479U6atac minor spliceosomal RNA1225488774225488891Rat
41097335LOC120100391small nucleolar RNA SNORA511225495834225495966Rat
7517961LOC102550663THO complex subunit 3-like1225665659225666454Rat
1589453LOC680623hypothetical protein LOC6806231225740072225741290Rat
41401218LOC120100160U6 spliceosomal RNA1225971183225971289Rat
1565505Glis3GLIS family zinc finger 31225976029226395849Rat
41142846LOC120098084uncharacterized LOC1200980841226451090226457544Rat
7715694LOC102546345uncharacterized LOC1025463451226521231226549807Rat
41277114LOC120100139U6 spliceosomal RNA1226541765226541871Rat
3696Slc1a1solute carrier family 1 member 11226549932226631925Rat
41317889LOC120100013uncharacterized LOC1201000131226555109226567867Rat
40929454LOC12010001260S ribosomal protein L27a-like1226599524226609228Rat
1310039Spata6lspermatogenesis associated 6-like1226630470226682979Rat
1566000Plpp6phospholipid phosphatase 61226679100226681952Rat
1588239LOC680727similar to Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)1226688444226689337Rat
1565057RGD1565057similar to hypothetical protein FLJ328711226689496226705125Rat
1309295Cdc37l1cell division cycle 37-like 11226705019226733994Rat
619885Ak3adenylate kinase 31226737472226764647Rat
41330694LOC120100014uncharacterized LOC1201000141226759144226764358Rat
41171347LOC120100015uncharacterized LOC1201000151226782511226787383Rat
1305320Rcl1RNA terminal phosphate cyclase-like 11226824524226869046Rat
2325609Mir101-2microRNA 101-21226860371226860467Rat
2939Jak2Janus kinase 21226995334227054381Rat
62061Insl6insulin-like 61227069958227073493Rat
7710008LOC102546806prohibitin-like1227073574227075424Rat
3579Rln1relaxin 11227079960227082960Rat
1306839Plgrktplasminogen receptor with a C-terminal lysine1227099005227111277Rat
1566211Cd274CD274 molecule1227116627227137379Rat
1585881LOC680908hypothetical protein LOC6809081227152984227153506Rat
1306403Pdcd1lg2programmed cell death 1 ligand 21227158941227223938Rat
1310016Ric1RIC1 homolog, RAB6A GEF complex partner 11227285510227384553Rat
727831Ermp1endoplasmic reticulum metallopeptidase 11227383992227422120Rat
40968931LOC120100016uncharacterized LOC1201000161227395243227398988Rat
41025615LOC120100017uncharacterized LOC1201000171227432377227441119Rat
41273033LOC120100018uncharacterized LOC1201000181227451357227453734Rat
1306525Mlanamelan-A1227469537227483343Rat
1311595RGD1311595similar to KIAA2026 protein1227490983227572246Rat
11481274LOC10834943360S ribosomal protein L7a pseudogene1227542130227543021Rat
1305165Ranbp6RAN binding protein 61227572394227576915Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34009D1Mit341241225126575225126682Ratregion
41392D1Rat3021591226660307226660468Ratregion
42530D1Rat4452251225436894225437098Ratregion
41610D1Rat3002781227604230227604520Ratregion
43422D1Got2251961227357370227357566Ratregion
43423D1Got2281191225824951225825067Ratregion
43426D1Got2311101225713778225713888Ratregion
60222D1Got2241551227075434227075585Ratregion
60225D1Got2301601227112235227112395Ratregion
1639989D1Cebr61421227193527227193669Ratregion
1640354D1Got343941227099775227099869Ratregion
5026008RH1305552081226765532226765740Ratregion
5029059RH1433611251226733443226733568Ratregion
5034600BF3900101411226745021226745162Ratregion
5029727BE1021131621225495877225496039Ratregion
5029935BF3880171521226732718226732870Ratregion
5032781RH1352771941225397248225397441Ratregion
5025242RH1275641881227483876227484064Ratregion
5028057Results_ER_8_28_95_2_42.seq1881226018279226018467Ratregion
5030741BE1078591951227535916227536111Ratregion
5025666RH1291951951226737498226737693Ratregion
5025768RH1295871571227387958227388115Ratregion
5057209D1Bda602001227080097227080297Ratregion
5057211D1Bda612341227053939227054173Ratregion
5050068RH1338442171226868658226868875Ratregion
5053857RH1428911061227572429227572535Ratregion
5053279RH1425561501227412517227412667Ratregion
5044000RH1303532021227385201227385403Ratregion
5040808RH1284951811227490216227490397Ratregion
5045494RH1312101881226733691226733879Ratregion
5044302RH1305251841226631740226631924Ratregion
5047630RH1324382031227491044227491247Ratregion
5047968RH1326332021227384319227384521Ratregion
5042258RH1293311891227054969227055158Ratregion
5042988RH1297632061227483132227483338Ratregion
5043306RH1299501891227099140227099329Ratregion
5041086RH1286541931226681606226681799Ratregion
5078100RH1401431971226739381226739578Ratregion
5080158RH1414182001227054207227054407Ratregion
5080202RH1414441941227223455227223650Ratregion
5080460RH1415911991227398099227398298Ratregion
5073732RH1376061371227503687227503824Ratregion
5067658AU0476131361226142736226142872Ratregion
5070143RH944971311227080020227080152Ratregion
5064056BE1205731531226629825226629978Ratregion
5065736BE1097541661226737930226738096Ratregion
5064842BF3998451741226551852226552026Ratregion
5084924AI2367391991226747183226747382Ratregion
5086333AA9564241911227386019227386210Ratregion
5503308UniSTS:2379191701227572418227572588Ratregion
5504205BARC00732191225740516225740721Ratregion
5507003fi76b03.x18451227470073227470919Ratregion
Position Markers

Flank 1: (D1Mit34)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21225,126,575 - 225,126,682 (+)MAPPER
Rnor_6.01245,529,606 - 245,529,710NCBI
Rnor_5.01252,776,360 - 252,776,464UniSTS
RGSC_v3.41230,963,695 - 230,963,799UniSTS
RGSC_v3.41230,963,697 - 230,963,799RGD
RGSC_v3.11231,127,720 - 231,127,822RGD
Celera1222,301,636 - 222,301,740UniSTS
RH 3.4 Map11608.7RGD
RH 3.4 Map11608.7UniSTS
SHRSP x BN Map1125.45UniSTS
SHRSP x BN Map1125.45RGD
FHH x ACI Map1111.25RGD
Cytogenetic Map1 RGD
Peak: (D1Rat302)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21226,660,307 - 226,660,468 (+)MAPPER
Rnor_6.01247,065,439 - 247,065,599NCBI
Rnor_5.01254,305,181 - 254,305,341UniSTS
RGSC_v3.41232,579,831 - 232,579,992RGD
RGSC_v3.41232,579,832 - 232,579,992UniSTS
RGSC_v3.11232,743,855 - 232,744,015RGD
Celera1223,813,143 - 223,813,303UniSTS
RH 3.4 Map11608.6UniSTS
RH 3.4 Map11608.6RGD
SHRSP x BN Map1126.57UniSTS
SHRSP x BN Map1126.57RGD
Cytogenetic Map1q52UniSTS
Flank 2: (D1Rat300)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,604,230 - 227,604,520 (+)MAPPER
Rnor_6.01248,012,805 - 248,013,094NCBI
Rnor_5.01255,263,313 - 255,263,602UniSTS
RGSC_v3.41233,550,964 - 233,551,254RGD
RGSC_v3.41233,550,965 - 233,551,254UniSTS
RGSC_v3.11233,714,988 - 233,715,277RGD
Celera1224,754,487 - 224,754,776UniSTS
RH 3.4 Map11617.4UniSTS
RH 3.4 Map11617.4RGD
RH 2.0 Map11178.1RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1214537555226660468Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
6480786Bw97Body weight QTL 975.03body mass (VT:0001259)body weight (CMO:0000012)1225126575227604520Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general measurement method: body weight was recorded 6893578
qtl_general number of animals used: 10-21 male rats from the founders and 782 male NMcwi:HS rats 6893578
qtl_general software used:ANOVA 6893578
qtl_map 232.58–233.29 Mb 6893578